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In the field of ocean observing, the term of “observatory” is often used without a unique meaning. A clear and unified definition of observatory is needed in order to facilitate the communication in a multidisciplinary community, to capitalize on future technological innovations and to support the observatory design based on societal needs. In this paper, we present a general framework to define the next generation Marine OBservatory (MOB), its capabilities and functionalities in an operational context. The MOB consists of four interconnected components or “gears” (observation infrastructure, cyberinfrastructure, support capacity, and knowledge generation engine) that are constantly and adaptively interacting with each other. Therefore, a MOB is a complex infrastructure focused on a specific geographic area with the primary scope to generate knowledge via data synthesis and thereby addressing scientific, societal, or economic challenges. Long-term sustainability is a key MOB feature that should be guaranteed through an appropriate governance. MOBs should be open to innovations and good practices to reduce operational costs and to allow their development in quality and quantity. A deeper biological understanding of the marine ecosystem should be reached with the proliferation of MOBs, thus contributing to effective conservation of ecosystems and management of human activities in the oceans. We provide an actionable model for the upgrade and development of sustained marine observatories producing knowledge to support science-based economic and societal decisions. Refereed 14.A Manual (incl. handbook, guide, cookbook etc) 2018-09-07

The Climate SPHINX (Stochastic Physics HIgh resolutioN eXperiments) project is a comprehensive set of ensemble simulations aimed at evaluating the sensitivity of present and future climate to model resolution and stochastic parameterisation. The EC-Earth Earth system model is used to explore the impact of stochastic physics in a large ensemble of 30-year climate integrations at five different atmospheric horizontal resolutions (from 125 up to 16 km). The project includes more than 120 simulations in both a historical scenario (1979–2008) and a climate change projection (2039–2068), together with coupled transient runs (1850–2100). A total of 20.4 million core hours have been used, made available from a single year grant from PRACE (the Partnership for Advanced Computing in Europe), and close to 1.5 PB of output data have been produced on SuperMUC IBM Petascale System at the Leibniz Supercomputing Centre (LRZ) in Garching, Germany. About 140 TB of post-processed data are stored on the CINECA supercomputing centre archives and are freely accessible to the community thanks to an EUDAT data pilot project. This paper presents the technical and scientific set-up of the experiments, including the details on the forcing used for the simulations performed, defining the SPHINX v1.0 protocol. In addition, an overview of preliminary results is given. An improvement in the simulation of Euro-Atlantic atmospheric blocking following resolution increase is observed. It is also shown that including stochastic parameterisation in the low-resolution runs helps to improve some aspects of the tropical climate – specifically the Madden–Julian Oscillation and the tropical rainfall variability. These findings show the importance of representing the impact of small-scale processes on the large-scale climate variability either explicitly (with high-resolution simulations) or stochastically (in low-resolution simulations).

In this paper we provide an overview of new knowledge on oxygen depletion (hypoxia) and related phenomena in aquatic systems resulting from the EU-FP7 project HYPOX ("In situ monitoring of oxygen depletion in hypoxic ecosystems of coastal and open seas, and landlocked water bodies", http://www.hypox.net). In view of the anticipated oxygen loss in aquatic systems due to eutrophication and climate change, HYPOX was set up to improve capacities to monitor hypoxia as well as to understand its causes and consequences. Temporal dynamics and spatial patterns of hypoxia were analyzed in field studies in various aquatic environments, including the Baltic Sea, the Black Sea, Scottish and Scandinavian fjords, Ionian Sea lagoons and embayments, and Swiss lakes. Examples of episodic and rapid (hours) occurrences of hypoxia, as well as seasonal changes in bottom-water oxygenation in stratified systems, are discussed. Geologically driven hypoxia caused by gas seepage is demonstrated. Using novel technologies, temporal and spatial patterns of water-column oxygenation, from basin-scale seasonal patterns to meter-scale sub-micromolar oxygen distributions, were resolved. Existing multidecadal monitoring data were used to demonstrate the imprint of climate change and eutrophication on long-term oxygen distributions. Organic and inorganic proxies were used to extend investigations on past oxygen conditions to centennial and even longer timescales that cannot be resolved by monitoring. The effects of hypoxia on faunal communities and biogeochemical processes were also addressed in the project. An investigation of benthic fauna is presented as an example of hypoxia-devastated benthic communities that slowly recover upon a reduction in eutrophication in a system where naturally occurring hypoxia overlaps with anthropogenic hypoxia. Biogeochemical investigations reveal that oxygen intrusions have a strong effect on the microbially mediated redox cycling of elements. Observations and modeling studies of the sediments demonstrate the effect of seasonally changing oxygen conditions on benthic mineralization pathways and fluxes. Data quality and access are crucial in hypoxia research. Technical issues are therefore also addressed, including the availability of suitable sensor technology to resolve the gradual changes in bottom-water oxygen in marine systems that can be expected as a result of climate change. Using cabled observatories as examples, we show how the benefit of continuous oxygen monitoring can be maximized by adopting proper quality control. Finally, we discuss strategies for state-of-the-art data archiving and dissemination in compliance with global standards, and how ocean observations can contribute to global earth observation attempts.

Changes in both global and regional mean sea level, and changes in the magnitude of extreme flood heights, are the result of a combination of several distinct contributions most, but not all, of which are associated with climate change. These contributions include effects in the solid earth, gravity field, changes in ocean mass due to ice loss from ice sheets and glaciers, thermal expansion, alterations in ocean circulation driven by climate change and changing freshwater fluxes, and the intensity of storm surges. Due to the diverse range of models required to simulate these systems, the contributions to sea-level change have usually been discussed in isolation rather than in one self-consistent assessment. Focusing on the coastline of northwest Europe, we consider all the processes mentioned above and their relative impact on 21st century regional mean sea levels and the 50-year return flood height. As far as possible our projections of change are derived from process-based models forced by the A1B emissions scenario to provide a self-consistent comparison of the contributions. We address uncertainty by considering both a mid-range and an illustrative high-end combination of the different components. For our mid-range ice loss scenario we find that thermal expansion of seawater is the dominant contributor to change in northwest European sea level by 2100. However, the projected contribution to extreme sea level, due to changes in storminess alone, is in some places significant and comparable to the global mean contribution of thermal expansion. For example, under the A1B emissions scenario, by 2100, change in storminess contributes around 15 cm to the increase in projected height of the 50-year storm surge on the west coast of the Jutland Peninsula, compared with a contribution of around 22 cm due to thermal expansion and a total of 58 cm from all of the contributions we consider. An illustrative combination of our high-end projections suggests increases in the 50-year return level of 86 cm at Sheerness, 95 cm at Roscoff, 106 cm at Esbjerg, and 67cm at Bergen. The notable regional differences between these locations arise primarily from differences in the rates of vertical land movement and changes in storminess.

The boron isotopic composition (δ11B) of marine carbonates (e.g. corals) is increasingly utilised as a proxy for paleo-pH, with the strong correlation between δ11B of marine calcifiers and seawater pH now well documented. However, the potential roles of other environmental parameters that may also influence both the boron isotopic composition and boron concentration into coral aragonite are poorly known. To overcome this, the tropical scleractinian coral Acropora sp. was cultured under 3 different temperatures (22, 25 and 28 °C) and two light conditions (200 and 400 μmol photon m−2 s−1). The δ11B indicates an increase in internal pH that is dependent on the light conditions. Changes in light intensities from 200 to 400 μmol photon m−2 s−1 seem to indicate an apparent decrease in pH at the site of calcification, contrary to what is expected in most models of light-enhanced calcification. Thus, variations in light conditions chosen to mimic average annual variations of the natural environments where Acropora sp. colonies can be found could bias pH reconstructions by about 0.05 units. For both light conditions, a significant impact of temperature on δ11B can be observed between 22 and 25 °C, corresponding to an increase of about 0.02 pH-units, while no further δ11B increase can be observed from 25 to 28 °C. This non-linear temperature effect complicates the determination of a correction factor. B / Ca ratios decrease with increasing light, consistent with the decrease in pH at the site of calcification under enhanced light intensities. When all the other parameters are constant, boron concentrations in Acropora sp. increase with increasing temperatures and increasing carbonate ion concentrations. These observations contradict previous studies where B / Ca in corals was found to vary inversely with temperature, suggesting that the controlling factors driving boron concentrations have not yet been adequately identified and might be influenced by other environmental variables and/or species-specific responses.

A coordinated effort, based on observing system simulation experiments (OSSEs), has been carried out by four European ocean forecasting centers for the first time, in order to provide insights on the present and future design of the in situ Atlantic Ocean observing system from a monitoring and forecasting perspective. This multi-system approach is based on assimilating synthetic data sets, obtained by sub-sampling in space and time using an eddy-resolving unconstrained simulation, named the Nature Run. To assess the ability of a given Atlantic Ocean observing system to constrain the ocean model state, a set of assimilating experiments were performed using four global eddy-permitting systems. For each set of experiments, different designs of the in situ observing system were assimilated, such as implementing a global drifter array equipped with a thermistor chain down to 150 m depth or extending a part of the global Argo array in the deep ocean. While results from the four systems show similarities and differences, the comparison of the experiments with the Nature Run, generally demonstrates a positive impact of the different extra observation networks on the temperature and salinity fields. The spread of the multi-system simulations, combined with the sensitivity of each system to the evaluated observing networks, allowed us to discuss the robustness of the results and their dependence on the specific analysis system. By helping define and test future observing systems from an integrated observing system view, the present work is an initial step toward better-coordinated initiatives supporting the evolution of the ocean observing system and its integration within ocean monitoring and forecasting systems. Refereed 14.A Manual (incl. handbook, guide, cookbook etc) 2019-03-14

Laboratory experiments were performed to study the dynamics of three- dimensional mechanically generated waves propagating over an oblique current in partial opposition. The flow velocity varied along the mean wave direction of propagation with an increasing trend between the wave-maker and the centre of the tank. Tests with regular wave packets traversing the area of positive current gradient showed that the concurrent increase of wave steepness triggered modulational instability on otherwise stable wave trains and hence induced the development of very large amplitude waves. In random directional wave fields, the presence of the oblique current resulted in a weak reinforcement of wave instability with a subsequent increase of the probability of occurrence of extreme events. This seems to partially compensate the suppression of strongly non-Gaussian properties due to directional energy distribution.

This dataset supports the recent publication "Microplastics increase the marine production of particulate forms of organic matter" by L. Galgani et al (2019) in ERL. It comprises all data presented in the manuscript and Supplementary Information. In the file, Control = mesocosm without plastic addition (1,2,3) and MP = mesocosm with plastic addition (1,2,3). The data proceed from the MESO-Plastic experiment in 2017 conducted at the Hellenic Center for Marine Research, a member of the European Aquacosm network of mesocosm facilities.

Chromophoric dissolved organic matter (CDOM) is the photo-reactive fraction of the marine dissolved organic matter (DOM) pool. Changes in CDOM quality and quantity have impacts on marine microbial dynamics and the underwater light environment. One major source of CDOM is produced by marine bacteria through their alteration of pre-existing DOM substrates. In a series of microcosm experiments in controlled marine conditions, we explored the impact of polystyrene microplastics on the quality and quantity of microbial CDOM, observing an increased production of CDOM with changes in its molecular weight, which resulted from either an increased microbial CDOM production or an enhanced transformation of DOM from lower to higher molecular weight CDOM. This open dataset reports CDOM, bacteria, DOC and oxygen data collected in the series of microcosm experiments recently published. They refer to Experimental Set-up 1 and Experimental Set-up 2 (ES1, ES2). The CDOM data from the blank control experiment are also reported.

From November 2008 through May 2009, the Po river (Italy) experienced several floods exceeding 5000 m3 s−1. This long series of events ended with a large flood in early May 2009 (~8000 m3 s−1). An event-response sampling was carried out in the Po prodelta in April–May 2009 to characterize the preservation of this series of floods in the sediment record and to describe the event-supply and deposition of riverborne particulate material during the May 2009 flood. The water sampling was carried out early in the event under conditions of moderate river flow (~5000 m3 s−1) and 24 h later during the peak discharge (~8000 m3 s−1). Sediment cores were collected in the prodelta before and after the peak flood. At each station, profiles of conductivity, transmittance, and fluorescence were acquired. Surface and bottom waters were sampled to collect sediments in suspension. In addition, a few days before the May 2009 event, suspended sediments were collected at Pontelagoscuro gauging station, ~90 km upstream from the coast. Biogeochemical compositions and sedimentological characteristics of suspended and sediment samples were investigated using bulk and biomarker analyses. Furthermore, 7Be and radiographs were used to analyze the internal stratigraphy of sediment cores. During moderate flow, the water column did not show evidence of plume penetration. Stations re-occupied 24 h later exhibited marked physical and biogeochemical changes during the peak flood. However, the concentration of terrestrially-derived material in surface waters was still less than expected. These results suggested that, since material enters the Adriatic as buoyancy-driven flow with a reduced transport capacity, settling and flocculation processes result in trapping a significant fraction of land-derived material in shallow sediments and/or within distributary channels. Although numerous discharge peaks occurred from November 2008 through April 2009 (4000–6000 m3 s−1), sediment cores collected in late April 2009 showed lack of event-strata preservation and reduced 7Be penetrations. This suggested that only a small fraction of the sediment supply during ordinary events reaches the deepest region of the prodelta (12–20 m water depth). As a result, these event-strata have a thickness not sufficient to be preserved in the sediment record because of post-depositional processes that destroy the flood signal. Stations in the northern and central prodelta were re-occupied after the peak of the May 2009 flood. Based on 7Be and radiographs, we estimated event layers of 17 and 6 cm thickness, respectively. Selective trapping of coarse material occurred in the central prodelta likely because of the geomorphologic setting of the central outlet characterized by an estuary-like mouth. Despite these settling processes, lignin-based parameters indicated that the composition of the terrigenous OC was fairly homogenous throughout the network of channels and between size-fractions.