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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: De Clippele, Laurence Helene; Huvenne, Veerle A I; Molodtsova, Tina; Roberts, J Murray;

    These datasets were used to describe the diversity, ecology and role of non-scleractinian corals on scleractinian cold-water coral carbonate mounds in the Logachev Mound Province, Rockall Bank, NE Atlantic. Cold-water coral carbonate mounds, created by framework-building scleractinian corals, are also important habitats for non-scleractinian corals, whose ecology and role are understudied in deep-sea environments. In total ten non-scleractinian species were identified, which were mapped out along eight ROV video transects. Eight species were identified as black corals (three belonging to the family Schizopathidae, one each to the Leiopathidae, Cladopathidae, and Antipathidae and two to an unknown family) and two as gorgonians (Isididae and Plexauridae). The most abundant species were Leiopathes sp. and Parantipathes sp. 2. Areas with a high diversity of non-scleractinian corals are interpreted to offer sufficient food, weak inter-species competition and the presence of heterogeneous and hard settlement substrates. A difference in the density and occurrence of small vs. large colonies of Leiopathes sp. was also observed, which is likely related to a difference in the stability of the substrate they choose for settlement. Non-scleractinian corals, especially black corals, are an important habitat for crabs, crinoids, and shrimps in the Logachev Mound Province.

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  • Authors: Pecci, Leda; Fichaut, Michele; Schaap, Dick;
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    Authors: Borit, Melania; Weber, Charlotte; Johnsen, Hanne Risan;

    Eurodoc Newsletter Issue #21

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  • Authors: Böttner, Christoph; Berndt, Christian;

    High-resolution 2D seismic reflection data during research cruise MSM63 in April/May 2017 onboard RV Maria S. Merian. The seismic profiles were acquired with a two-105/105-in3-GI-Gun-array shot at 210 bar every 5 seconds and a 150 m-long streamer with 96 channels and 1.5625 m channel spacing. The resulting shot point distance is approximately 8.75-12.5 m at 3.5-5 kn ship speed. The frequency range of the two-GI-Gun-array is 15-500 Hz. The processing included geometry and delay corrections, static corrections, binning to 1.5625 m and bandpass filtering with corner frequencies of 25, 45, 420, and 500 Hz. Furthermore, a normal-move-out-correction (with a constant velocity of 1488 m/s calculated from CTD measurements) was applied and the data were stacked and then migrated using a 2D Stolt algorithm (1500 m/s constant velocity model). Sub-bottom profiler data acquired during cruise MSM63 using Parasound P70 with 4 kHz as the secondary low frequency to obtain seismic images of the upper 100 m below the seafloor with very high vertical resolution (< 15 cm). We applied a frequency filter (low cut 2 kHz, high cut 6 kHz, 2 iterations) and calculated the envelope within the seismic interpretation software IHS Kingdom. Bathymetric data were acquired with the EM712 system mounted to the hull of RV Maria S. Merian. The survey was designed to provide high-resolution bathymetry with 5 x 5 m resolution. We processed the data using MB Systems software (Caress & Chayes, 2017) and included statistical evaluation of soundings that increased the signal-to-noise ratio. The sound velocity profile for multibeam processing was measured at the beginning and at the end of the cruise.

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    Authors: Tessin, Allyson; März, Christian; Kędra, Monika; Matthiessen, Jens; +4 Authors

    The Arctic Ocean region is currently undergoing dramatic changes, which will likely alter the nutrient cycles that underpin Arctic marine ecosystems. Phosphate is a key limiting nutrient for marine life but gaps in our understanding of the Arctic phosphorus (P) cycle persist. In this study, we investigate the benthic burial and recycling of phosphorus using sediments and pore waters from the Eurasian Arctic margin, including the Barents Sea slope and the Yermak Plateau. Our results highlight that P is generally lost from sediments with depth during organic matter respiration. On the Yermak Plateau, remobilization of P results in a diffusive flux of P to the seafloor of between 96 and 261 μmol m−2 yr−1. On the Barents Sea slope, diffusive fluxes of P are much larger (1736–2449 μmol m−2 yr−1), but these fluxes are into near-surface sediments rather than to the bottom waters. The difference in cycling on the Barents Sea slope is controlled by higher fluxes of fresh organic matter and active iron cycling. As changes in primary productivity, ocean circulation and glacial melt continue, benthic P cycling is likely to be altered with implications for P imported into the Arctic Ocean Basin.

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    Authors: Smith, Craig R.; Tunnicliffe, Verena; Colaco, Ana; Drazen, Jeffrey C.; +9 Authors

    Gordon & Betty Moore FoundationGordon and Betty Moore Foundation [5596]; Canada Research Chairs FoundationCanada Research Chairs; European Union's Horizon 2020 research and innovation programme under Marie Sklodowska-Curie grant [747946]; Fundacao para a Ciencia e Tecnologia I.P. Portugal (FCT); Direcao-Geral de Politica do Mar (DGPM) [2/2017/001-MiningImpact 2]; FCTPortuguese Foundation for Science and TechnologyEuropean Commission [CEECIND005262017, UID/MAR/00350/2013, IF/01194/2013, IF/00029/2014/CP1230/CT0002, Mining2/0005/2017]; RF State Assignment [0149-2019-0009]; Horizon 2020 Agricultural Interoperability and Analysis System (ATLAS) projects [678760]; JM Kaplan Fund; National Science FoundationNational Science Foundation (NSF) [OCE 1634172]; JPI Oceans project Mining Impact -Environmental Impacts and Risks of Deep-Sea Mining Aug 2018-Feb 2022 (NWO-ALW) [856.18.001] info:eu-repo/semantics/publishedVersion

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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Van Audenhaege, Loïc; Broad, Emmeline; Hendry, Katharine R; Huvenne, Veerle A I;

    We used a multibeam echosounder (Reson7125) front-mounted onto the ROV Isis (Dive D333, DY081 expedition) to map the terrain of a vertical feature marking the edge of a deep-sea glacial trough (Labrador Sea, [63°51.9'N, 53°16.9'W, depth: 650 to 800 m]). After correction of the ROV navigation (i.e. merging of USBL and DVL), bathymetry [m] and backscatter [nominal unit] were extracted at a resolution of 0.3 m and different terrain descriptors were computed: Slope, Bathymetric Position Index (BPI), Terrain Ruggedness Index, Roughness, Mean and Gaussian curvatures and orientations (Northness and Eastness), at scales of 0.9, 3 and 9 m. Using a Principal Component Analysis (PCA), the terrain descriptors enabled to retrieve 4 terrain clusters and their associated confusion index, to investigate the spatial heterogeneity of the terrain. This approach also underlined the presence of geomorphic features in the wall terrain. The extraction of the backscatter intensity for the first time considering vertical terrains, opens space for further acquisition and processing development. Using photographs collected by the ROV Isis (Dive D334, DY081 expedition), epibenthic fauna was annotated. Each image was linked to a terrain cluster in the 3D space and pooled into 20-m² bins of images. A Bray-Curtis dissimilarity matrix was constructed from morphospecies abundances. This enabled to test for differences of assemblage composition among clusters. Few species appeared more abundant in particular clusters such as L. pertusa in high-roughness cluster. However, nMDS suggested differences in assemblage composition but these dissimilarities were not strongly delineated. Whereas the design of this study may have limited distinctive differences among assemblages, this shows the potential of this cost-effective method of top-down habitat mapping to be applied in undersampled benthic habitat in order to provide a priori knwoledge for defining appropriate sampling design.

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  • Authors: Sévéno, Julie; Sirjacobs, Damien; Lejeune, Pierre; Baurain, Denis; +4 Authors

    The pennate diatom Haslea ostrearia is the emblematic and most studied species of the genus Haslea. H. ostrearia is mainly benthic and epiphyte, forming biofilm on sediment and on macroalgae. The cells produce a blue water-soluble pigment: the marennine with allelopathic, antioxidant, antiviral, antibacterial properties observed in laboratory conditions. Marennine is responsible for the greening of oysters in refining ponds in the Marennes Oléron area (France), a phenomenon that has economical and patrimonial values. Recently, new species of blue Haslea producing marennine-like pigments were described (H. karadagensis, H. nusantara, H. provincialis). Last years, large benthic blooms of blue Haslea spp. have been observed in natural environments, e.g. in Calvi Bay, Corsica France. First the species of Haslea responsible for the bloom were identified using morphological and molecular approaches. Their abundances were determined and cartography of the recent blooms localisations was achieved. Then, within shallow photophilous rocky habitats affected by the bloom, the epiphytic communities of some representant macroalgal species (Padina sp. and Acetabularia sp.) were studied using taxonomic identification tools. This information will be used to define if the release of marennine-like pigments during blooms affects the structure of the benthic epiphytic and epiplithic microfauna and microflora. This work represents the first studies on the dynamic of the bloom of Haslea in natural environment in open water. The Genus Haslea, New marine resources for blue biotechnology and Aquaculture

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  • Authors: Frosini L.;

    The gCube Information System (shortly, IS) delivers functionalities for publishing, discovering, and monitoring the set of resources forming the infrastructure. Moreover it allows to federate different infrastructures. It acts as the registry of the infrastructure, i.e. all the resources are registered in the IS and every service partaking in the infrastructure must refer to it to dynamically discover the other infrastructure constituents. Moreover, the approach provided by the IS is of great support for the dynamic deployment capabilities of gCube.

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    Authors: Crise, Alessandro; Ribera d’Alcalà, Maurizio; Mariani, Patrizio; Petihakis, George; +4 Authors

    In the field of ocean observing, the term of “observatory” is often used without a unique meaning. A clear and unified definition of observatory is needed in order to facilitate the communication in a multidisciplinary community, to capitalize on future technological innovations and to support the observatory design based on societal needs. In this paper, we present a general framework to define the next generation Marine OBservatory (MOB), its capabilities and functionalities in an operational context. The MOB consists of four interconnected components or “gears” (observation infrastructure, cyberinfrastructure, support capacity, and knowledge generation engine) that are constantly and adaptively interacting with each other. Therefore, a MOB is a complex infrastructure focused on a specific geographic area with the primary scope to generate knowledge via data synthesis and thereby addressing scientific, societal, or economic challenges. Long-term sustainability is a key MOB feature that should be guaranteed through an appropriate governance. MOBs should be open to innovations and good practices to reduce operational costs and to allow their development in quality and quantity. A deeper biological understanding of the marine ecosystem should be reached with the proliferation of MOBs, thus contributing to effective conservation of ecosystems and management of human activities in the oceans. We provide an actionable model for the upgrade and development of sustained marine observatories producing knowledge to support science-based economic and societal decisions. Refereed 14.A Manual (incl. handbook, guide, cookbook etc) 2018-09-07

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    Authors: De Clippele, Laurence Helene; Huvenne, Veerle A I; Molodtsova, Tina; Roberts, J Murray;

    These datasets were used to describe the diversity, ecology and role of non-scleractinian corals on scleractinian cold-water coral carbonate mounds in the Logachev Mound Province, Rockall Bank, NE Atlantic. Cold-water coral carbonate mounds, created by framework-building scleractinian corals, are also important habitats for non-scleractinian corals, whose ecology and role are understudied in deep-sea environments. In total ten non-scleractinian species were identified, which were mapped out along eight ROV video transects. Eight species were identified as black corals (three belonging to the family Schizopathidae, one each to the Leiopathidae, Cladopathidae, and Antipathidae and two to an unknown family) and two as gorgonians (Isididae and Plexauridae). The most abundant species were Leiopathes sp. and Parantipathes sp. 2. Areas with a high diversity of non-scleractinian corals are interpreted to offer sufficient food, weak inter-species competition and the presence of heterogeneous and hard settlement substrates. A difference in the density and occurrence of small vs. large colonies of Leiopathes sp. was also observed, which is likely related to a difference in the stability of the substrate they choose for settlement. Non-scleractinian corals, especially black corals, are an important habitat for crabs, crinoids, and shrimps in the Logachev Mound Province.

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  • Authors: Pecci, Leda; Fichaut, Michele; Schaap, Dick;
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    Authors: Borit, Melania; Weber, Charlotte; Johnsen, Hanne Risan;

    Eurodoc Newsletter Issue #21

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  • Authors: Böttner, Christoph; Berndt, Christian;

    High-resolution 2D seismic reflection data during research cruise MSM63 in April/May 2017 onboard RV Maria S. Merian. The seismic profiles were acquired with a two-105/105-in3-GI-Gun-array shot at 210 bar every 5 seconds and a 150 m-long streamer with 96 channels and 1.5625 m channel spacing. The resulting shot point distance is approximately 8.75-12.5 m at 3.5-5 kn ship speed. The frequency range of the two-GI-Gun-array is 15-500 Hz. The processing included geometry and delay corrections, static corrections, binning to 1.5625 m and bandpass filtering with corner frequencies of 25, 45, 420, and 500 Hz. Furthermore, a normal-move-out-correction (with a constant velocity of 1488 m/s calculated from CTD measurements) was applied and the data were stacked and then migrated using a 2D Stolt algorithm (1500 m/s constant velocity model). Sub-bottom profiler data acquired during cruise MSM63 using Parasound P70 with 4 kHz as the secondary low frequency to obtain seismic images of the upper 100 m below the seafloor with very high vertical resolution (< 15 cm). We applied a frequency filter (low cut 2 kHz, high cut 6 kHz, 2 iterations) and calculated the envelope within the seismic interpretation software IHS Kingdom. Bathymetric data were acquired with the EM712 system mounted to the hull of RV Maria S. Merian. The survey was designed to provide high-resolution bathymetry with 5 x 5 m resolution. We processed the data using MB Systems software (Caress & Chayes, 2017) and included statistical evaluation of soundings that increased the signal-to-noise ratio. The sound velocity profile for multibeam processing was measured at the beginning and at the end of the cruise.

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    Authors: Tessin, Allyson; März, Christian; Kędra, Monika; Matthiessen, Jens; +4 Authors

    The Arctic Ocean region is currently undergoing dramatic changes, which will likely alter the nutrient cycles that underpin Arctic marine ecosystems. Phosphate is a key limiting nutrient for marine life but gaps in our understanding of the Arctic phosphorus (P) cycle persist. In this study, we investigate the benthic burial and recycling of phosphorus using sediments and pore waters from the Eurasian Arctic margin, including the Barents Sea slope and the Yermak Plateau. Our results highlight that P is generally lost from sediments with depth during organic matter respiration. On the Yermak Plateau, remobilization of P results in a diffusive flux of P to the seafloor of between 96 and 261 μmol m−2 yr−1. On the Barents Sea slope, diffusive fluxes of P are much larger (1736–2449 μmol m−2 yr−1), but these fluxes are into near-surface sediments rather than to the bottom waters. The difference in cycling on the Barents Sea slope is controlled by higher fluxes of fresh organic matter and active iron cycling. As changes in primary productivity, ocean circulation and glacial melt continue, benthic P cycling is likely to be altered with implications for P imported into the Arctic Ocean Basin.

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    Authors: Smith, Craig R.; Tunnicliffe, Verena; Colaco, Ana; Drazen, Jeffrey C.; +9 Authors

    Gordon & Betty Moore FoundationGordon and Betty Moore Foundation [5596]; Canada Research Chairs FoundationCanada Research Chairs; European Union's Horizon 2020 research and innovation programme under Marie Sklodowska-Curie grant [747946]; Fundacao para a Ciencia e Tecnologia I.P. Portugal (FCT); Direcao-Geral de Politica do Mar (DGPM) [2/2017/001-MiningImpact 2]; FCTPortuguese Foundation for Science and TechnologyEuropean Commission [CEECIND005262017, UID/MAR/00350/2013, IF/01194/2013, IF/00029/2014/CP1230/CT0002, Mining2/0005/2017]; RF State Assignment [0149-2019-0009]; Horizon 2020 Agricultural Interoperability and Analysis System (ATLAS) projects [678760]; JM Kaplan Fund; National Science FoundationNational Science Foundation (NSF) [OCE 1634172]; JPI Oceans project Mining Impact -Environmental Impacts and Risks of Deep-Sea Mining Aug 2018-Feb 2022 (NWO-ALW) [856.18.001] info:eu-repo/semantics/publishedVersion

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    Authors: Van Audenhaege, Loïc; Broad, Emmeline; Hendry, Katharine R; Huvenne, Veerle A I;

    We used a multibeam echosounder (Reson7125) front-mounted onto the ROV Isis (Dive D333, DY081 expedition) to map the terrain of a vertical feature marking the edge of a deep-sea glacial trough (Labrador Sea, [63°51.9'N, 53°16.9'W, depth: 650 to 800 m]). After correction of the ROV navigation (i.e. merging of USBL and DVL), bathymetry [m] and backscatter [nominal unit] were extracted at a resolution of 0.3 m and different terrain descriptors were computed: Slope, Bathymetric Position Index (BPI), Terrain Ruggedness Index, Roughness, Mean and Gaussian curvatures and orientations (Northness and Eastness), at scales of 0.9, 3 and 9 m. Using a Principal Component Analysis (PCA), the terrain descriptors enabled to retrieve 4 terrain clusters and their associated confusion index, to investigate the spatial heterogeneity of the terrain. This approach also underlined the presence of geomorphic features in the wall terrain. The extraction of the backscatter intensity for the first time considering vertical terrains, opens space for further acquisition and processing development. Using photographs collected by the ROV Isis (Dive D334, DY081 expedition), epibenthic fauna was annotated. Each image was linked to a terrain cluster in the 3D space and pooled into 20-m² bins of images. A Bray-Curtis dissimilarity matrix was constructed from morphospecies abundances. This enabled to test for differences of assemblage composition among clusters. Few species appeared more abundant in particular clusters such as L. pertusa in high-roughness cluster. However, nMDS suggested differences in assemblage composition but these dissimilarities were not strongly delineated. Whereas the design of this study may have limited distinctive differences among assemblages, this shows the potential of this cost-effective method of top-down habitat mapping to be applied in undersampled benthic habitat in order to provide a priori knwoledge for defining appropriate sampling design.

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  • Authors: Sévéno, Julie; Sirjacobs, Damien; Lejeune, Pierre; Baurain, Denis; +4 Authors

    The pennate diatom Haslea ostrearia is the emblematic and most studied species of the genus Haslea. H. ostrearia is mainly benthic and epiphyte, forming biofilm on sediment and on macroalgae. The cells produce a blue water-soluble pigment: the marennine with allelopathic, antioxidant, antiviral, antibacterial properties observed in laboratory conditions. Marennine is responsible for the greening of oysters in refining ponds in the Marennes Oléron area (France), a phenomenon that has economical and patrimonial values. Recently, new species of blue Haslea producing marennine-like pigments were described (H. karadagensis, H. nusantara, H. provincialis). Last years, large benthic blooms of blue Haslea spp. have been observed in natural environments, e.g. in Calvi Bay, Corsica France. First the species of Haslea responsible for the bloom were identified using morphological and molecular approaches. Their abundances were determined and cartography of the recent blooms localisations was achieved. Then, within shallow photophilous rocky habitats affected by the bloom, the epiphytic communities of some representant macroalgal species (Padina sp. and Acetabularia sp.) were studied using taxonomic identification tools. This information will be used to define if the release of marennine-like pigments during blooms affects the structure of the benthic epiphytic and epiplithic microfauna and microflora. This work represents the first studies on the dynamic of the bloom of Haslea in natural environment in open water. The Genus Haslea, New marine resources for blue biotechnology and Aquaculture

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  • Authors: Frosini L.;

    The gCube Information System (shortly, IS) delivers functionalities for publishing, discovering, and monitoring the set of resources forming the infrastructure. Moreover it allows to federate different infrastructures. It acts as the registry of the infrastructure, i.e. all the resources are registered in the IS and every service partaking in the infrastructure must refer to it to dynamically discover the other infrastructure constituents. Moreover, the approach provided by the IS is of great support for the dynamic deployment capabilities of gCube.

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    Authors: Crise, Alessandro; Ribera d’Alcalà, Maurizio; Mariani, Patrizio; Petihakis, George; +4 Authors

    In the field of ocean observing, the term of “observatory” is often used without a unique meaning. A clear and unified definition of observatory is needed in order to facilitate the communication in a multidisciplinary community, to capitalize on future technological innovations and to support the observatory design based on societal needs. In this paper, we present a general framework to define the next generation Marine OBservatory (MOB), its capabilities and functionalities in an operational context. The MOB consists of four interconnected components or “gears” (observation infrastructure, cyberinfrastructure, support capacity, and knowledge generation engine) that are constantly and adaptively interacting with each other. Therefore, a MOB is a complex infrastructure focused on a specific geographic area with the primary scope to generate knowledge via data synthesis and thereby addressing scientific, societal, or economic challenges. Long-term sustainability is a key MOB feature that should be guaranteed through an appropriate governance. MOBs should be open to innovations and good practices to reduce operational costs and to allow their development in quality and quantity. A deeper biological understanding of the marine ecosystem should be reached with the proliferation of MOBs, thus contributing to effective conservation of ecosystems and management of human activities in the oceans. We provide an actionable model for the upgrade and development of sustained marine observatories producing knowledge to support science-based economic and societal decisions. Refereed 14.A Manual (incl. handbook, guide, cookbook etc) 2018-09-07

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