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354 Research products

  • European Marine Science
  • 2014-2023
  • Other research products
  • EC|H2020
  • EU
  • GB
  • English

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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Tangunan, Deborah N; Berke, Melissa A; Cartagena-Sierra, Alejandra; Flores, José Abel; +11 Authors

    In the southern Indian Ocean, the position of the subtropical front – the boundary between colder, fresher waters to the south and warmer, saltier waters to the north – has a strong influence on the upper ocean hydrodynamics and biogeochemistry. Here we analyse a sedimentary record from the Agulhas Plateau, located close to the modern position of the subtropical front and use alkenones and coccolith assemblages to reconstruct oceanographic conditions over the past 300,000 years. We identify a strong glacial-interglacial variability in sea surface temperature and productivity associated with subtropical front migration over the Agulhas Plateau, as well as shorter-term high frequency variability aligned with variations in high latitude insolation. Alkenone and coccolith abundances, in combination with diatom and organic carbon records indicate high glacial export productivity. We conclude that the biological pump was more efficient and strengthened during glacial periods, which could partly account for the reported reduction in atmospheric carbon dioxide concentrations.

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  • Authors: Frosini L.;

    The gCube Information System (shortly, IS) delivers functionalities for publishing, discovering, and monitoring the set of resources forming the infrastructure. Moreover it allows to federate different infrastructures. It acts as the registry of the infrastructure, i.e. all the resources are registered in the IS and every service partaking in the infrastructure must refer to it to dynamically discover the other infrastructure constituents. Moreover, the approach provided by the IS is of great support for the dynamic deployment capabilities of gCube.

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    CNR ExploRA
    Other ORP type . 2017
    Data sources: CNR ExploRA
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      CNR ExploRA
      Other ORP type . 2017
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Van Audenhaege, Loïc; Broad, Emmeline; Hendry, Katharine R; Huvenne, Veerle A I;

    We used a multibeam echosounder (Reson7125) front-mounted onto the ROV Isis (Dive D333, DY081 expedition) to map the terrain of a vertical feature marking the edge of a deep-sea glacial trough (Labrador Sea, [63°51.9'N, 53°16.9'W, depth: 650 to 800 m]). After correction of the ROV navigation (i.e. merging of USBL and DVL), bathymetry [m] and backscatter [nominal unit] were extracted at a resolution of 0.3 m and different terrain descriptors were computed: Slope, Bathymetric Position Index (BPI), Terrain Ruggedness Index, Roughness, Mean and Gaussian curvatures and orientations (Northness and Eastness), at scales of 0.9, 3 and 9 m. Using a Principal Component Analysis (PCA), the terrain descriptors enabled to retrieve 4 terrain clusters and their associated confusion index, to investigate the spatial heterogeneity of the terrain. This approach also underlined the presence of geomorphic features in the wall terrain. The extraction of the backscatter intensity for the first time considering vertical terrains, opens space for further acquisition and processing development. Using photographs collected by the ROV Isis (Dive D334, DY081 expedition), epibenthic fauna was annotated. Each image was linked to a terrain cluster in the 3D space and pooled into 20-m² bins of images. A Bray-Curtis dissimilarity matrix was constructed from morphospecies abundances. This enabled to test for differences of assemblage composition among clusters. Few species appeared more abundant in particular clusters such as L. pertusa in high-roughness cluster. However, nMDS suggested differences in assemblage composition but these dissimilarities were not strongly delineated. Whereas the design of this study may have limited distinctive differences among assemblages, this shows the potential of this cost-effective method of top-down habitat mapping to be applied in undersampled benthic habitat in order to provide a priori knwoledge for defining appropriate sampling design.

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    Authors: Crise, Alessandro; Ribera d’Alcalà, Maurizio; Mariani, Patrizio; Petihakis, George; +4 Authors

    In the field of ocean observing, the term of “observatory” is often used without a unique meaning. A clear and unified definition of observatory is needed in order to facilitate the communication in a multidisciplinary community, to capitalize on future technological innovations and to support the observatory design based on societal needs. In this paper, we present a general framework to define the next generation Marine OBservatory (MOB), its capabilities and functionalities in an operational context. The MOB consists of four interconnected components or “gears” (observation infrastructure, cyberinfrastructure, support capacity, and knowledge generation engine) that are constantly and adaptively interacting with each other. Therefore, a MOB is a complex infrastructure focused on a specific geographic area with the primary scope to generate knowledge via data synthesis and thereby addressing scientific, societal, or economic challenges. Long-term sustainability is a key MOB feature that should be guaranteed through an appropriate governance. MOBs should be open to innovations and good practices to reduce operational costs and to allow their development in quality and quantity. A deeper biological understanding of the marine ecosystem should be reached with the proliferation of MOBs, thus contributing to effective conservation of ecosystems and management of human activities in the oceans. We provide an actionable model for the upgrade and development of sustained marine observatories producing knowledge to support science-based economic and societal decisions. Refereed 14.A Manual (incl. handbook, guide, cookbook etc) 2018-09-07

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    Authors: Eisen, Olaf; Steinhage, Daniel; Karlsson, Nanna Bjørnholt; Binder, Tobias; +1 Authors

    This data set contains the ice thickness data as recorded with the AWI airborne radar system (Nixdorf et al., 1999), operated with a 150 MHz pulse of 600 ns duration. Some 20000 line kilometres of ice thickness data were recorded in the Dome Fuji region, Antarctica. These data contain the corrected and ungridded product. The original gridded product is available through doi:10.1594/PANGAEA.891323 (Karlsson et al., 2018).

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    Authors: Yang, Yang; Proud, Roland; Castellón, Arturo; Sabatés, Ana; +2 Authors

    These data consist of both underway and station echosounder observations collected during the 2020 SUMMER (Sustainable Management of Mesopelagic Resources) Mediterranean cruise (30 September 2020 to 18 October 2020) on the RV Sarmiento de Gamboa. Narrowband (18, 38, 70, 120, 200 kHz) underway acoustic data were collected continuously using hull-mounted Simrad EK80 echosounders. The recording depths for the 5 frequencies were 1000, 1000, 750, 500, and 200 m respectively. Calibrations were carried out on the 1st of October 2020 using a 33 mm tungsten sphere,and the calibration results were applied to the instruments. During the survey, a Simrad wideband autonomous receiver (WBAT) was deployed down to a depth of 500 m whilst on station. In total, 31 drops were carried out at 5 stations. Four transducers (central frequencies were 45, 120, 200, 333 kHz) were operated using the WBAT in frequency modulated (FM) mode (bandwidth ranging from 45 to 445 kHz). The WBAT calibration data were collected using a 33 mm tungsten sphere. During the deployment of the WBAT, the hull-mounted EK80 was switched to FM mode to record broadband measurements. Raw power (W), number of transducer segments and transceiver impedance (Ohm) were stored in raw proprietary Simrad format (.raw, .idx).

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    Authors: Geerlings, Nicole M. J.; Zetsche, Eva-Maria; Hidalgo-Martinez, Silvia; Middelburg, Jack J.; +1 Authors

    Cable bacteria are multicellular, filamentous microorganisms that are capable of transporting electrons over centimeter-scale distances. Although recently discovered, these bacteria appear to be widely present in the seafloor, and when active they exert a strong imprint on the local geochemistry. In particular, their electrogenic metabolism induces unusually strong pH excursions in aquatic sediments, which induces considerable mineral dissolution, and subsequent mineral reprecipitation. However, at present, it is unknown whether and how cable bacteria play an active or direct role in the mineral reprecipitation process. To this end we present an explorative study of the formation of sedimentary minerals in and near filamentous cable bacteria using a combined approach of electron microscopy and spectroscopic techniques. Our observations reveal the formation of polyphosphate granules within the cells and two different types of biomineral formation directly associated with multicellular filaments of these cable bacteria: (i) the attachment and incorporation of clay particles in a coating surrounding the bacteria and (ii) encrustation of the cell envelope by iron minerals. These findings suggest a complex interaction between cable bacteria and the surrounding sediment matrix, and a substantial imprint of the electrogenic metabolism on mineral diagenesis and sedimentary biogeochemical cycling. In particular, the encrustation process leaves many open questions for further research. For example, we hypothesize that the complete encrustation of filaments might create a diffusion barrier and negatively impact the metabolism of the cable bacteria.

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    Authors: Smith, Craig R.; Tunnicliffe, Verena; Colaco, Ana; Drazen, Jeffrey C.; +9 Authors

    Gordon & Betty Moore FoundationGordon and Betty Moore Foundation [5596]; Canada Research Chairs FoundationCanada Research Chairs; European Union's Horizon 2020 research and innovation programme under Marie Sklodowska-Curie grant [747946]; Fundacao para a Ciencia e Tecnologia I.P. Portugal (FCT); Direcao-Geral de Politica do Mar (DGPM) [2/2017/001-MiningImpact 2]; FCTPortuguese Foundation for Science and TechnologyEuropean Commission [CEECIND005262017, UID/MAR/00350/2013, IF/01194/2013, IF/00029/2014/CP1230/CT0002, Mining2/0005/2017]; RF State Assignment [0149-2019-0009]; Horizon 2020 Agricultural Interoperability and Analysis System (ATLAS) projects [678760]; JM Kaplan Fund; National Science FoundationNational Science Foundation (NSF) [OCE 1634172]; JPI Oceans project Mining Impact -Environmental Impacts and Risks of Deep-Sea Mining Aug 2018-Feb 2022 (NWO-ALW) [856.18.001] info:eu-repo/semantics/publishedVersion

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    Authors: Drury, Anna Joy; Liebrand, Diederik; Westerhold, Thomas; Beddow, Helen M; +8 Authors

    These are the supplementary datasets for the manuscript: Drury, A.J., Liebrand, D., Westerhold, T., Beddow, H., Hodell, D., Rohlfs, N., Wilkens, R.H., Lourens, L., 'History of South Atlantic carbonate deposition since the Oligocene (30-0 Ma)', in final preparation for submission Climate of the Past

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    https://doi.org/10.1594/pangae...
    Collection . 2020
    License: CC BY
    Data sources: Sygma
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      https://doi.org/10.1594/pangae...
      Collection . 2020
      License: CC BY
      Data sources: Sygma
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    Authors: Grimaldo, Eduardo; Grimsmo, Leif; Alvarez, Paula; Herrmann, Bent; +9 Authors

    During three cruises in the Mid Atlantic Ridge area in 2016 and 2017, we studied the biomass of mesopelagic fish and its potential as a source of protein and oil for animal feed and human consumption. We collected samples of mesopelagic species down to a depth of 600 m, studied fish behaviour, identified and quantified the species composition of the catches, analysed the chemical composition of the catch samples, and evaluated the presence of unwanted substances. Results showed that Maurolicus muelleri (Mueller's pearlside) and Benthosema glaciale (Glacier lantern fish) were the most abundant fish species in our samples and catches containing 80% fish can be a good source of protein and marine lipids including eicosapentaenoic acid (C20:5n3) and docosahexaenoic acid (C22:6n3). Unwanted substances, except for Cd and As, were present at levels far lower than the limits set by European Union regulations. However, our experiments identified challenges that may limit the efficiency of commercial operations in the Northeast Atlantic. Combined real-time optical and/or multifrequency acoustic systems will be needed to improve species identification and ensure cost-effective fishing operations. Also, selective trawls that target only fish and release unwanted species are needed to secure high-quality oils and proteins.

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    https://doi.org/10.1594/pangae...
    Collection . 2021
    License: CC BY
    Data sources: Sygma
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354 Research products
  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Tangunan, Deborah N; Berke, Melissa A; Cartagena-Sierra, Alejandra; Flores, José Abel; +11 Authors

    In the southern Indian Ocean, the position of the subtropical front – the boundary between colder, fresher waters to the south and warmer, saltier waters to the north – has a strong influence on the upper ocean hydrodynamics and biogeochemistry. Here we analyse a sedimentary record from the Agulhas Plateau, located close to the modern position of the subtropical front and use alkenones and coccolith assemblages to reconstruct oceanographic conditions over the past 300,000 years. We identify a strong glacial-interglacial variability in sea surface temperature and productivity associated with subtropical front migration over the Agulhas Plateau, as well as shorter-term high frequency variability aligned with variations in high latitude insolation. Alkenone and coccolith abundances, in combination with diatom and organic carbon records indicate high glacial export productivity. We conclude that the biological pump was more efficient and strengthened during glacial periods, which could partly account for the reported reduction in atmospheric carbon dioxide concentrations.

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  • Authors: Frosini L.;

    The gCube Information System (shortly, IS) delivers functionalities for publishing, discovering, and monitoring the set of resources forming the infrastructure. Moreover it allows to federate different infrastructures. It acts as the registry of the infrastructure, i.e. all the resources are registered in the IS and every service partaking in the infrastructure must refer to it to dynamically discover the other infrastructure constituents. Moreover, the approach provided by the IS is of great support for the dynamic deployment capabilities of gCube.

    CNR ExploRAarrow_drop_down
    CNR ExploRA
    Other ORP type . 2017
    Data sources: CNR ExploRA
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      Other ORP type . 2017
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Van Audenhaege, Loïc; Broad, Emmeline; Hendry, Katharine R; Huvenne, Veerle A I;

    We used a multibeam echosounder (Reson7125) front-mounted onto the ROV Isis (Dive D333, DY081 expedition) to map the terrain of a vertical feature marking the edge of a deep-sea glacial trough (Labrador Sea, [63°51.9'N, 53°16.9'W, depth: 650 to 800 m]). After correction of the ROV navigation (i.e. merging of USBL and DVL), bathymetry [m] and backscatter [nominal unit] were extracted at a resolution of 0.3 m and different terrain descriptors were computed: Slope, Bathymetric Position Index (BPI), Terrain Ruggedness Index, Roughness, Mean and Gaussian curvatures and orientations (Northness and Eastness), at scales of 0.9, 3 and 9 m. Using a Principal Component Analysis (PCA), the terrain descriptors enabled to retrieve 4 terrain clusters and their associated confusion index, to investigate the spatial heterogeneity of the terrain. This approach also underlined the presence of geomorphic features in the wall terrain. The extraction of the backscatter intensity for the first time considering vertical terrains, opens space for further acquisition and processing development. Using photographs collected by the ROV Isis (Dive D334, DY081 expedition), epibenthic fauna was annotated. Each image was linked to a terrain cluster in the 3D space and pooled into 20-m² bins of images. A Bray-Curtis dissimilarity matrix was constructed from morphospecies abundances. This enabled to test for differences of assemblage composition among clusters. Few species appeared more abundant in particular clusters such as L. pertusa in high-roughness cluster. However, nMDS suggested differences in assemblage composition but these dissimilarities were not strongly delineated. Whereas the design of this study may have limited distinctive differences among assemblages, this shows the potential of this cost-effective method of top-down habitat mapping to be applied in undersampled benthic habitat in order to provide a priori knwoledge for defining appropriate sampling design.

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    Authors: Crise, Alessandro; Ribera d’Alcalà, Maurizio; Mariani, Patrizio; Petihakis, George; +4 Authors

    In the field of ocean observing, the term of “observatory” is often used without a unique meaning. A clear and unified definition of observatory is needed in order to facilitate the communication in a multidisciplinary community, to capitalize on future technological innovations and to support the observatory design based on societal needs. In this paper, we present a general framework to define the next generation Marine OBservatory (MOB), its capabilities and functionalities in an operational context. The MOB consists of four interconnected components or “gears” (observation infrastructure, cyberinfrastructure, support capacity, and knowledge generation engine) that are constantly and adaptively interacting with each other. Therefore, a MOB is a complex infrastructure focused on a specific geographic area with the primary scope to generate knowledge via data synthesis and thereby addressing scientific, societal, or economic challenges. Long-term sustainability is a key MOB feature that should be guaranteed through an appropriate governance. MOBs should be open to innovations and good practices to reduce operational costs and to allow their development in quality and quantity. A deeper biological understanding of the marine ecosystem should be reached with the proliferation of MOBs, thus contributing to effective conservation of ecosystems and management of human activities in the oceans. We provide an actionable model for the upgrade and development of sustained marine observatories producing knowledge to support science-based economic and societal decisions. Refereed 14.A Manual (incl. handbook, guide, cookbook etc) 2018-09-07

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    Authors: Eisen, Olaf; Steinhage, Daniel; Karlsson, Nanna Bjørnholt; Binder, Tobias; +1 Authors

    This data set contains the ice thickness data as recorded with the AWI airborne radar system (Nixdorf et al., 1999), operated with a 150 MHz pulse of 600 ns duration. Some 20000 line kilometres of ice thickness data were recorded in the Dome Fuji region, Antarctica. These data contain the corrected and ungridded product. The original gridded product is available through doi:10.1594/PANGAEA.891323 (Karlsson et al., 2018).

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    Authors: Yang, Yang; Proud, Roland; Castellón, Arturo; Sabatés, Ana; +2 Authors

    These data consist of both underway and station echosounder observations collected during the 2020 SUMMER (Sustainable Management of Mesopelagic Resources) Mediterranean cruise (30 September 2020 to 18 October 2020) on the RV Sarmiento de Gamboa. Narrowband (18, 38, 70, 120, 200 kHz) underway acoustic data were collected continuously using hull-mounted Simrad EK80 echosounders. The recording depths for the 5 frequencies were 1000, 1000, 750, 500, and 200 m respectively. Calibrations were carried out on the 1st of October 2020 using a 33 mm tungsten sphere,and the calibration results were applied to the instruments. During the survey, a Simrad wideband autonomous receiver (WBAT) was deployed down to a depth of 500 m whilst on station. In total, 31 drops were carried out at 5 stations. Four transducers (central frequencies were 45, 120, 200, 333 kHz) were operated using the WBAT in frequency modulated (FM) mode (bandwidth ranging from 45 to 445 kHz). The WBAT calibration data were collected using a 33 mm tungsten sphere. During the deployment of the WBAT, the hull-mounted EK80 was switched to FM mode to record broadband measurements. Raw power (W), number of transducer segments and transceiver impedance (Ohm) were stored in raw proprietary Simrad format (.raw, .idx).

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    Authors: Geerlings, Nicole M. J.; Zetsche, Eva-Maria; Hidalgo-Martinez, Silvia; Middelburg, Jack J.; +1 Authors

    Cable bacteria are multicellular, filamentous microorganisms that are capable of transporting electrons over centimeter-scale distances. Although recently discovered, these bacteria appear to be widely present in the seafloor, and when active they exert a strong imprint on the local geochemistry. In particular, their electrogenic metabolism induces unusually strong pH excursions in aquatic sediments, which induces considerable mineral dissolution, and subsequent mineral reprecipitation. However, at present, it is unknown whether and how cable bacteria play an active or direct role in the mineral reprecipitation process. To this end we present an explorative study of the formation of sedimentary minerals in and near filamentous cable bacteria using a combined approach of electron microscopy and spectroscopic techniques. Our observations reveal the formation of polyphosphate granules within the cells and two different types of biomineral formation directly associated with multicellular filaments of these cable bacteria: (i) the attachment and incorporation of clay particles in a coating surrounding the bacteria and (ii) encrustation of the cell envelope by iron minerals. These findings suggest a complex interaction between cable bacteria and the surrounding sediment matrix, and a substantial imprint of the electrogenic metabolism on mineral diagenesis and sedimentary biogeochemical cycling. In particular, the encrustation process leaves many open questions for further research. For example, we hypothesize that the complete encrustation of filaments might create a diffusion barrier and negatively impact the metabolism of the cable bacteria.

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    Authors: Smith, Craig R.; Tunnicliffe, Verena; Colaco, Ana; Drazen, Jeffrey C.; +9 Authors

    Gordon & Betty Moore FoundationGordon and Betty Moore Foundation [5596]; Canada Research Chairs FoundationCanada Research Chairs; European Union's Horizon 2020 research and innovation programme under Marie Sklodowska-Curie grant [747946]; Fundacao para a Ciencia e Tecnologia I.P. Portugal (FCT); Direcao-Geral de Politica do Mar (DGPM) [2/2017/001-MiningImpact 2]; FCTPortuguese Foundation for Science and TechnologyEuropean Commission [CEECIND005262017, UID/MAR/00350/2013, IF/01194/2013, IF/00029/2014/CP1230/CT0002, Mining2/0005/2017]; RF State Assignment [0149-2019-0009]; Horizon 2020 Agricultural Interoperability and Analysis System (ATLAS) projects [678760]; JM Kaplan Fund; National Science FoundationNational Science Foundation (NSF) [OCE 1634172]; JPI Oceans project Mining Impact -Environmental Impacts and Risks of Deep-Sea Mining Aug 2018-Feb 2022 (NWO-ALW) [856.18.001] info:eu-repo/semantics/publishedVersion

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