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The dataset compiles pigment content, absorptance data, photosynthetic parameters and primary production data as proxies for summertime photoacclimation of the temperate intertidal eelgrass Zostera marina after a 25-day exposure to a natural light intensity gradient (6, 36, 74, 133, 355, 503 and 860 µmol photons/m²/s) under laboratory conditions at the Pointe-au-Père research station, East Rimouski, Quebec, Canada. The data bundle contains: 1) photosynthetic and total absorptance data at the end of the experiment, which respectively represent the fraction of incident visible light absorbed by the photosynthetic tissues corrected and not corrected for non-photosynthetic absorption; 2) pigment content at the end of the experiment, which includes chlorophyll a and b and total carotenoids contents; 3) photosynthetic parameters obtained by Rapid Light Curves (RLC) on days 5 and 25, including photosynthetic apparatus efficiency (alpha), capacity (ETRmax) and saturation (Ek); 4) whole shoot primary production at the end of the experiment, which was calculated from oxygen fluxes under light and dark conditions, and normalized by leaf surface.

This thesis explores the application of a traditionally terrestrial-based ecological theory, the Theory of Island Biogeography (TIB), to a large marine ecosystem. Decades of testing of this theory have led to various extensions acknowledging that the slope of the Species-Area Relationship (SAR) reflects species traits related to dispersal capacity, and species’ competitive and predatory interactions. Until recently, it was largely believed that marine ecosystems were too large and interconnected for this body of theory to apply. My research indicates that this is not true. I tested the applicability of TIB and its derivatives to the structure and dynamics of fish and macroinvertebrate communities inhabiting ten highly productive offshore banks (ranging 500 to 10’500 km2) located on the Scotian Shelf, NW Atlantic Ocean. In Chapter 2, I found support for the TIB: there was a positive SAR for the fish species of the offshore banks. I also found support for predictions of the Trophic TIB concerning the role of predators in controlling the SAR of lower trophic levels: prey and mesopredator SAR slopes increased following the collapse of largebodied predatory groundfish populations due to overfishing. In Chapter 3, I tested for a positive SAR across the macroinvertebrate assemblages of the banks. I found a significant SAR slope only for the least dispersive taxon, supporting early predictions of a negative relation between dispersal capacity and SAR slope. I also found that oceanographic processes play an important role in connecting these assemblages, most-so for highly dispersive taxa. In Chapter 4, across the fish assemblages of the banks, I found support for the original predictions of TIB that, on average over the long-term, bank-specific colonization and extinction events are at equilibrium. However, I also found a dramatic increase in interannual turnover of prey fish species following predator collapse, particularly on the coldest, largest banks, suggesting an extension of the Trophic TIB linking increased SAR slopes to reduced temporal stability may be warranted. My research supports the continued application of TIB and its modern derivatives in large marine ecosystems to elucidate variation of insularity and temporal stability among species assemblages under different disturbance regimes.

Over the past few decades, terrestrially derived dissolved organic carbon (DOC) has been recognized as a fundamental driver of food web productivity in nutrient poor lakes. The mechanisms that underlie these effects remain poorly understood, particularly for higher trophic levels including zooplankton, benthic invertebrates, and fish. In a survey of eight lakes in northwestern Ontario, I determined consumer biomass and used stable isotopes of carbon, nitrogen, and hydrogen to investigate relationships between DOC and pathways of energy flow, resource and habitat availability, and consumer biomass. Using Bayesian stable isotope mixing models, I found that hypolimnetic phytoplankton were an important resource for zooplankton in low-DOC lakes. With increased DOC concentrations, light attenuation increased and chlorophyll a concentrations below the thermocline were reduced relative to epilimnetic concentrations. At higher DOC concentrations, zooplankton acquired proportionately more energy from low quality terrestrial sources. Zooplankton biomass also declined with increasing utilization of terrestrial sources (allochthony), suggesting that terrestrial organic matter suppresses zooplankton productivity through simultaneous limitations on habitat and resource availability and quality. Based on biomass, the dominant fish species across my study lakes was White Sucker (Catostomus commersonnii). Bayesian mixing models indicated that allochthony by White Suckers increased with DOC and that greater allochthony was related to lower White Sucker biomass measured as catch-per-unit-effort (bCPUE). Both White Sucker bCPUE and chironomid biomass were positively related to mean light irradiance, with the highest biomasses of fish and chironomids occurring in lakes with a higher proportion of their volume in the photic zone. White Sucker bCPUE was strongly and positively correlated with chironomid biomass, suggesting that DOC-mediated resource limitation may influence fish productivity via reduced prey availability.

Seasonal dynamics in the activity of Arctic shelf benthos have been the subject of few local studies, and the pronounced among-site variability characterizing their results makes it difficult to upscale and generalize their conclusions. In a regional study encompassing five sites at 100-595 m water depth in the southeastern Beaufort Sea, we found that total pigment concentrations in surficial sediments, used as proxies of general food supply to the benthos, rose significantly after the transition from ice-covered conditions in spring (March-June 2008) to open-water conditions in summer (June-August 2008), whereas sediment Chl a concentrations, typical markers of fresh food input, did not. Macrobenthic biomass (including agglutinated foraminifera >500 µm) varied significantly among sites (1.2-6.4 g C/m**2 in spring, 1.1-12.6 g C/m**2 in summer), whereas a general spring-to-summer increase was not detected. Benthic carbon remineralisation also ranged significantly among sites (11.9-33.2 mg C/m**2/day in spring, 11.6-44.4 mg C/m**2/day in summer) and did in addition exhibit a general significant increase from spring-to-summer. Multiple regression analysis suggests that in both spring and summer, sediment Chl a concentration is the prime determinant of benthic carbon remineralisation, but other factors have a significant secondary influence, such as foraminiferan biomass (negative in both seasons), water depth (in spring) and infaunal biomass (in summer). Our findings indicate the importance of the combined and dynamic effects of food supply and benthic community patterns on the carbon remineralisation of the polar shelf benthos in seasonally ice-covered seas.

Enhanced release of alkalinity from the seafloor, principally driven by anaerobic degradation of organic matter under low-oxygen conditions and associated secondary redox reactions, can increase the carbon dioxide (CO2) buffering capacity of seawater and therefore oceanic CO2 uptake. The Baltic Sea has undergone severe changes in oxygenation state and total alkalinity (TA) over the past decades. The link between these concurrent changes has not yet been investigated in detail. A recent system-wide TA budget constructed for the past 50 years using BALTSEM, a coupled physical–biogeochemical model for the whole Baltic Sea area revealed an unknown TA source. Here we use BALTSEM in combination with observational data and one-dimensional reactive-transport modeling of sedimentary processes in the Fårö Deep, a deep Baltic Sea basin, to test whether sulfate (SO42-) reduction coupled to iron (Fe) sulfide burial can explain the missing TA source in the Baltic Proper. We calculated that this burial can account for up to 26 % of the missing source in this basin, with the remaining TA possibly originating from unknown river inputs or submarine groundwater discharge. We also show that temporal variability in the input of Fe to the sediments since the 1970s drives changes in sulfur (S) burial in the Fårö Deep, suggesting that Fe availability is the ultimate limiting factor for TA generation under anoxic conditions. The implementation of projected climate change and two nutrient load scenarios for the 21st century in BALTSEM shows that reducing nutrient loads will improve deep water oxygen conditions, but at the expense of lower surface water TA concentrations, CO2 buffering capacities and faster acidification. When these changes additionally lead to a decrease in Fe inputs to the sediment of the deep basins, anaerobic TA generation will be reduced even further, thus exacerbating acidification. This work highlights that Fe dynamics plays a key role in the release of TA from sediments where Fe sulfide formation is limited by Fe availability, as exemplified by the Baltic Sea. Moreover, it demonstrates that burial of Fe sulfides should be included in TA budgets of low-oxygen basins.

The mid-Pliocene is a valuable time interval for investigating equilibrium climate at current atmospheric CO2 concentrations because atmospheric CO2 concentrations are thought to have been comparable to the current day and yet the climate and distribution of ecosystems were quite different. One intriguing, but not fully understood, feature of the early to mid-Pliocene climate is the amplified Arctic temperature response and its impact on Arctic ecosystems. Only the most recent models appear to correctly estimate the degree of warming in the Pliocene Arctic and validation of the currently proposed feedbacks is limited by scarce terrestrial records of climate and environment. Here we reconstruct the summer temperature and fire regime from a subfossil fen-peat deposit on west–central Ellesmere Island, Canada, that has been chronologically constrained using cosmogenic nuclide burial dating to 3.9+1.5/-0.5 Ma. The estimate for average mean summer temperature is 15.4±0.8 ∘C using specific bacterial membrane lipids, i.e., branched glycerol dialkyl glycerol tetraethers. This is above the proposed threshold that predicts a substantial increase in wildfire in the modern high latitudes. Macro-charcoal was present in all samples from this Pliocene section with notably higher charcoal concentration in the upper part of the sequence. This change in charcoal was synchronous with a change in vegetation that included an increase in abundance of fire-promoting Pinus and Picea. Paleo-vegetation reconstructions are consistent with warm summer temperatures, relatively low summer precipitation and an incidence of fire comparable to fire-adapted boreal forests of North America and central Siberia. To our knowledge, this site provides the northernmost evidence of fire during the Pliocene. It suggests that ecosystem productivity was greater than in the present day, providing fuel for wildfires, and that the climate was conducive to the ignition of fire during this period. The results reveal that interactions between paleo-vegetation and paleoclimate were mediated by fire in the High Arctic during the Pliocene, even though CO2 concentrations were similar to modern values.

Inter‐individual variation in phenotypic traits has long been considered as "noise" rather than meaningful phenotypic variation, with biological studies almost exclusively generating and reporting average responses for populations and species' aver‐ age responses. Here, we compare the use of an individual approach in the investigation of extracellular acid-base regulation by the purple sea urchin Paracentrotus lividus challenged with elevated pCO2 and temperature conditions, with a more traditional approach which generates and formally compares mean values. We detected a high level of inter‐individual variation in acid-base regulation parameters both within and between treatments. Comparing individual and mean values for the first (apparent) dissociation constant of the coelomic fluid for individual sea urchins resulted in substantially different (calculated) acid-base parameters, and models with stronger statistical support. While the approach using means showed that coelomic pCO2 was influenced by seawater pCO2 and temperature combined, the individual approach indicated that it was in fact seawater temperature in isolation that had a significant effect on coelomic pCO2. On the other hand, coelomic [HCO3−] appeared to be primarily affected by seawater pCO2, and less by seawater temperature, irrespective of the approach adopted. As a consequence, we suggest that individual variation in physiological traits needs to be considered, and where appropriate taken into ac‐ count, in global change biology studies. It could be argued that an approach reliant on mean values is a "procedural error." It produces an artefact, that is, a population's mean phenotype. While this may allow us to conduct relatively simple statistical analyses, it will not in all cases reflect, or take into account, the degree of (physiological) diversity present in natural populations.

This study presents a high-resolution, chronologically well-constrained pollen record from Lake Kushu (45°25′58″N, 141°02′05″E) and a record of archaeobotanical remains from the nearby Hamanaka 2 archaeological site. The pollen record suggests continuous long-term cooling, which parallels the decline in Northern Hemisphere summer insolation. This cooling trend is overlaid by several rather quick transitions towards cooler conditions (ca. 5540/5350, 1550, and 390 cal BP) and one distinct decadal-scale cold event around 4130 cal BP. These shifts, on one hand, correspond with major hemispherical or global-scale climate transitions/events, including the 'Holocene Climate Transition', the onset of the 'Dark Ages Cold Period' main phase, the 'Little Ice Age', and the '4.2 kiloyear event', respectively. On the other hand, the shifts partly coincide with transformations in the Hokkaido prehistoric cultural sequence including the onset of the Middle Jomon (ca. 5000 cal BP), the Middle/Late Jomon transition (ca. 4000 cal BP), the immigration of Okhotsk culture groups (from ca. 1500 cal BP), and the establishment of the Classic Ainu culture (ca. 350 cal BP). AMS radiocarbon dating of charred macrobotanical remains from Hamanaka 2 suggests three discontinuous occupational periods ca. 390–50 BCE, 420–970 CE, and from 1640 CE, which correspond to the northern Hokkaido Epi Jomon (ca. 300–100 BCE), Okhotsk (ca. 500–1000 CE), and Classic Ainu (ca. 1600–1868 CE) cultural phases, respectively. While impact on the island's natural environments (forest clearance) was marginal during the Epi Jomon phase, it became significant during the Okhotsk and the Classic Ainu culture phases.

Palaeomagnetic investigation of three sediment cores from the Chukchi and Beaufort Sea margins was performed to better constrain the regional chronostratigraphy and to gain insights into sediment magnetic properties at the North American Arctic margin during the Holocene and the preceding deglaciation. Palaeomagnetic analyses reveal that the sediments under study are characterized by low-coercivity ferrimagnetic minerals (magnetite), mostly in the pseudo-single domain grain-size range, and by a strong, stable, well-defined remanent magnetization (MAD <5°). Age models for these sediment cores were constrained by comparing their palaeomagnetic secular variations (inclination, declination and relative palaeointensity) with previously published and independently dated sedimentary marine records from the study area. The magnetostratigraphical age models were verified by AMS radiocarbon dating tie points, tephrochronology and 210Pb-based sedimentation rate estimate. The analysed cores 01JPC, 03PC and 02PC span c. 6000, 10 500 and 13 500 cal. a BP, respectively. The estimated sedimentation rates were stable and relatively high since the deglaciation in cores 01JPC (60 cm ka-1) and 03PC (40-70 cm ka-1). Core 02PC shows much lower Holocene sedimentation rates with a strong decrease after the deglaciation from ~60 to 10-20 cm ka-1. Overall, this study illustrates the usefulness of palaeomagnetism to improve the dating of late Quaternary sedimentary records in the Arctic Ocean.