• European Marine Science
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Combining state-of-the art digital imaging technology with different kinds of marine exploration techniques such as modern autonomous underwater vehicle (AUV), remote operating vehicle (ROV) or other monitoring platforms enables marine imaging on new spatial and/or temporal scales. A comprehensive interpretation of such image collections requires the detection, classification and quantification of objects of interest (OOI) in the images usually performed by domain experts. However, the data volume and the rich content of the images makes the support by software tools inevitable. We define some requirements for marine image annotation and present our new online tool BIIGLE 2.0. It is developed with a special focus on annotating benthic fauna in marine image collections with tools customized to increase efficiency and effectiveness in the manual annotation process. The software architecture of the system is described and the special features of BIIGLE 2.0 are illustrated with different use-cases and future developments are discussed.

Herbivorous fishes play a critical role in maintaining or disrupting the ecological resilience of many kelp forests, coral reefs and seagrass ecosystems, worldwide. The increasing rate and scale of benthic habitat loss under global change has magnified the importance of herbivores and highlights the need to study marine herbivory at ecologically relevant scales. Currently, underwater herbivore exclusions (or inclusions) have been restricted to small scale experimental plots, in large part due to the challenges of designing structures that can withstand the physical forces of waves and currents, without drastically altering the physical environment inside the exclusion area. We tested the ability of bubble curtains to deter herbivorous fishes from feeding on seaweeds as an alternative to the use of rigid exclusion cages. Kelps (Ecklonia radiata) were transplanted onto reefs with high browsing herbivore pressure into either unprotected plots, exclusion cages or plots protected by bubble curtains of 0.785 m2 and 3.14 m2. Remote underwater video was used to compare the behavioral response of fishes to kelps protected and unprotected by bubble curtains. Kelp biomass loss was significantly lower inside the bubble curtains compared to unprotected kelps and did not differ from kelp loss rates in traditional exclusion cages. Consistent with this finding, no herbivorous fishes were observed entering into the bubble curtain at any point during the experiment. In contrast, fish bite rates on unprotected kelps were 1,621 ± 702 bites h−1 (mean ± SE). Our study provides initial evidence that bubble curtains can exclude herbivorous fishes, paving the way for future studies to examine their application at larger spatial and temporal scales, beyond what has been previously feasible using traditional exclusion cages.

Metabarcoding is an accurate and cost-effective technique that allows for simultaneous taxonomic identification of multiple environmental samples. Application of this technique to marine benthic macroinvertebrate biodiversity assessment for biomonitoring purposes requires standardization of laboratory and data analysis procedures. In this context, protocols for creation and sequencing of amplicon libraries and their related bioinformatics analysis have been recently published. However, a standardized protocol describing all previous steps (i.e., processing and manipulation of environmental samples for macroinvertebrate community characterization) is lacking. Here, we provide detailed procedures for benthic environmental sample collection, processing, enrichment for macroinvertebrates, homogenization, and subsequent DNA extraction for metabarcoding analysis. Since this is the first protocol of this kind, it should be of use to any researcher in this field, having the potential for improvement. Refereed Guide 2016-06-15

Several legal and administrative instruments aimed to reduce the spread of non-indigenous species, that may pose harm to the environment, economy and/or human health, were developed in recent years at international and national levels, such as the International Convention for the Control and Management of Ship's Ballast Water and Sediments, the International Council for the Exploration of the Sea Code of Practice on the Introductions and Transfers of Marine Organisms, the EU Regulation on Invasive Alien Species and the Marine Strategy Framework Directive, the US Invasive Species Act, the Biosecurity Act of New Zealand, etc. The effectiveness of these instruments can only be measured by successes in the prevention of new introductions. We propose an indicator, the arrival of new non-indigenous species (nNIS), which helps to assess introduction rates, especially in relation to pathways and vectors of introduction, and is aimed to support management. The technical precondition for the calculation of nNIS is the availability of a global, continuously updated and verified source of information on aquatic non-indigenous species. Such a database is needed, because the indicator should be calculated at different geographical scales: (1) for a particular area, such as port or coast of a country within a Large Marine Ecosystem (LME); (2) for a whole LME; and (3) for a larger biogeographical region, including two or more neighboring LMEs. The geographical scale of nNIS helps to distinguish between a primary introduction and secondary spread, which may involve different pathways and vectors. This, in turn, determines the availability of management options, because it is more feasible to prevent a primary introduction than to stop subsequent secondary spread. The definition of environmental target, size of assessment unit and possible limitations of the indicator are also discussed.

This paper fulfils a gap in environmental management by producing a typology of stakeholders for effective participatory processes and co-design of solutions to complex social–environmental issues and then uses this typology for a stepwise roadmap methodology for balanced and productive stakeholder engagement. Definitions are given of terminology that is frequently used interchangeably such as “stakeholders,” “social actors,” and “interested parties.” Whilst this analysis comes from a marine perspective, it is relevant to all environments and the means of tackling environmental problems. Eleven research questions about participative processes are addressed, based on more than 30 years of experience in water, estuarine, coastal, and marine management. A stepwise roadmap, supported by illustrative tables based on case-studies, shows how a balanced stakeholder selection and real engagement may be achieved. The paper brings these together in the context of several up-to-date concepts such as complex, nested governance, the 10 tenets for integrated, successful, and sustainable marine management, the System Approach Framework and the evolution of DPSIR into DAPSI(W)R(M) framework. Examples given are based on the implementation of the Marine Strategy Framework Directive, the Water Framework Directive, the Environmental Impact Assessment Directive, the Framework Directive for Maritime Spatial Planning, as well as for Regional Sea Conventions. The paper also shows how tools that have been developed in recent projects can be put to use to implement policy and maximize the effectiveness of stakeholder participation.