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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: P. Zemunik; J. Šepić; H. Pellikka; L. Ćatipović; +2 Authors

    Sea-level observations provide information on a variety of processes occurring over different temporal and spatial scales that may contribute to coastal flooding and hazards. However, global research on sea-level extremes is restricted to hourly datasets, which prevent the quantification and analyses of processes occurring at timescales between a few minutes and a few hours. These shorter-period processes, like seiches, meteotsunamis, infragravity and coastal waves, may even dominate in low tidal basins. Therefore, a new global 1 min sea-level dataset – MISELA (Minute Sea-Level Analysis) – has been developed, encompassing quality-checked records of nonseismic sea-level oscillations at tsunami timescales (T<2 h) obtained from 331 tide-gauge sites (https://doi.org/10.14284/456, Zemunik et al., 2021b). This paper describes data quality control procedures applied to the MISELA dataset, world and regional coverage of tide-gauge sites, and lengths of time series. The dataset is appropriate for global, regional or local research of atmospherically induced high-frequency sea-level oscillations, which should be included in the overall sea-level extremes assessments.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODO; Earth System...arrow_drop_down
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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    DOAJ
    Article . 2021
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODO; Earth System...arrow_drop_down
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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      DOAJ
      Article . 2021
      Data sources: DOAJ
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: François Fripiat; Klaus M Meiners; Martin Vancoppenolle; Stathys Papadimitriou; +19 Authors

    Antarctic pack ice is inhabited by a diverse and active microbial community reliant on nutrients for growth. Seeking patterns and overlooked processes, we performed a large-scale compilation of macro-nutrient data (hereafter termed nutrients) in Antarctic pack ice (306 ice-cores collected from 19 research cruises). Dissolved inorganic nitrogen and silicic acid concentrations change with time, as expected from a seasonally productive ecosystem. In winter, salinity-normalized nitrate and silicic acid concentrations (C∗) in sea ice are close to seawater concentrations (Cw), indicating little or no biological activity. In spring, nitrate and silicic acid concentrations become partially depleted with respect to seawater (C∗ Cw). The phosphate excess could be explained by a greater allocation to phosphorus-rich biomolecules during ice algal blooms coupled with convective loss of excess dissolved nitrogen, preferential remineralization of phosphorus, and/or phosphate adsorption onto metal-organic complexes. Ammonium also appears to be efficiently adsorbed onto organic matter, with likely consequences to nitrogen mobility and availability. This dataset supports the view that the sea ice microbial community is highly efficient at processing nutrients but with a dynamic quite different from that in oceanic surface waters calling for focused future investigations. info:eu-repo/semantics/published SCOPUS: ar.j

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ NARCIS; Elementa: Sc...arrow_drop_down
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    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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    CNR ExploRA; Elementa: Science of the Anthropocene
    Article . 2017 . Peer-reviewed
    License: CC BY
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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    DOAJ
    Article . 2017
    Data sources: DOAJ
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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    DI-fusion
    Article . 2017 . Peer-reviewed
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    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Hal-Diderot
    Article . 2017
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ NARCIS; Elementa: Sc...arrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      CNR ExploRA; Elementa: Science of the Anthropocene
      Article . 2017 . Peer-reviewed
      License: CC BY
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      DOAJ
      Article . 2017
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      DI-fusion
      Article . 2017 . Peer-reviewed
      Data sources: DI-fusion
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      Hal-Diderot
      Article . 2017
      Data sources: Hal-Diderot
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Nadja Triesch; Manuela van Pinxteren; Sanja Frka; Christian Stolle; +7 Authors

    In the marine environment, measurements of lipids as representative species within different lipid classes have been performed to characterize their oceanic sources and their transfer from the ocean into the atmosphere to marine aerosol particles. The set of lipid classes includes hydrocarbons (HC); fatty acid methyl esters (ME); free fatty acids (FFA); alcohols (ALC); 1,3-diacylglycerols (1,3 DG); 1,2-diacylglycerols (1,2 DG); monoacylglycerols (MG); wax esters (WE); triacylglycerols (TG); and phospholipids (PP) including phosphatidylglycerols (PG), phosphatidylethanolamine (PE), phosphatidylcholines (PC), as well as glycolipids (GL) which cover sulfoquinovosyldiacylglycerols (SQDG), monogalactosyl-diacylglycerols (MGDG), digalactosyldiacylglycerols (DGDG) and sterols (ST). These introduced lipid classes have been analyzed in the dissolved and particulate fraction of seawater, differentiating between underlying water (ULW) and the sea surface microlayer (SML) on the one hand. On the other hand, they have been examined on ambient submicrometer aerosol particle samples (PM1) which were collected at the Cape Verde Atmospheric Observatory (CVAO) by applying concerted measurements. These different lipids are found in all marine compartments but in different compositions. Along the campaign, certain variabilities are observed for the concentration of dissolved (∑DLULW: 39.8–128.5 µg L−1, ∑DLSML: 55.7–121.5 µg L−1) and particulate (∑PLULW: 36.4–93.5 µg L−1, ∑PLSML: 61.0–118.1 µg L−1) lipids in the seawater of the tropical North Atlantic Ocean. Only slight SML enrichments are observed for the lipids with an enrichment factor EFSML of 1.1–1.4 (DL) and 1.0–1.7 (PL). On PM1 aerosol particles, a total lipid concentration between 75.2–219.5 ng m−3 (averaged: 119.9 ng m−3) is measured. As also bacteria – besides phytoplankton sources – influence the lipid concentrations in seawater and on the aerosol particles, the lipid abundance cannot be exclusively explained by the phytoplankton tracer (chlorophyll a). The concentration and enrichment of lipids in the SML are not related to physicochemical properties which describe the surface activity. On the aerosol particles, an EFaer (the enrichment factor on the submicrometer aerosol particles compared to the SML) between 9×104–7×105 is observed. Regarding the individual lipid groups on the aerosol particles, a statistically significant correlation (R2=0.45, p=0.028) was found between EFaer and lipophilicity (expressed by the KOW value), which was not present for the SML. But simple physicochemical descriptors are overall not sufficient to fully explain the transfer of lipids. As our findings show that additional processes such as formation and degradation influence the ocean–atmosphere transfer of both OM in general and of lipids in particular, they have to be considered in OM transfer models. Moreover, our data suggest that the extent of the enrichment of the lipid class constituents on the aerosol particles might be related to the distribution of the lipid within the bubble–air–water interface. The lipids TG and ALC which are preferably arranged within the bubble interface are transferred to the aerosol particles to the highest extent. Finally, the connection between ice nucleation particles (INPs) in seawater, which are already active at higher temperatures (−10 to −15 ∘C), and the lipid classes PE and FFA suggests that lipids formed in the ocean have the potential to contribute to (biogenic) INP activity when transferred into the atmosphere.

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    Croatian Scientific Bibliography - CROSBI
    Article . Preprint . 2020 . 2021 . Peer-reviewed
    License: CC BY
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      Croatian Scientific Bibliography - CROSBI
      Article . Preprint . 2020 . 2021 . Peer-reviewed
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    Authors: Claudia Kruschel; Stewart T. Schultz;

    We performed over 19,000 lure-assisted, underwater visual fish census transects at over 140 shallow coastal sampling locations in the mid- eastern Adriatic sea of the Croatian mainland and islands, recording all fish taxa observed, their predatory behavior in response to the lure, and the cover of benthic habitats with which they were associated. We hypothesized that prey habitat preference was a learned or selected response to aggressive behavior by piscivorous mesopredators, and predicted that mobile prey would be spatially segregated from aggressive predators into different benthic habitats within local sampling sites. We found that aggressive piscivores were primarily wait-chase or cruise-chase mesopredators that preferentially foraged along heterogeneous habitat edges within juxtapositions of rock, unconsolidated sediment, macroalgae (Cystoseira spp.) and seagrass (usually Posidonia oceanica). Prey species and less aggressive piscivores avoided these heterogeneous habitats and preferred more homogeneous habitats that the aggressive predators in turn avoided. We found strong and consistent spatial segregation between aggressive predators on the one hand, and less aggressive predators and prey on the other hand. These results are consistent with the hypothesis that aggressive behavior by piscivorous species is the primary organizing force shaping assembly of fish communities at our study sites, driving preference and occupancy of heterogeneous and homogeneous benthic habitats. Management of shallow benthic resources should recognize the value of complementarity in habitats allowing coexistence of predators and prey through contrasting habitat preferences.

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    Authors: Florian Humily; Frédéric Partensky; Christophe Six; Gregory K. Farrant; +3 Authors

    Synechococcus, the second most abundant oxygenic phototroph in the marine environment, harbors the largest pigment diversity known within a single genus of cyanobacteria, allowing it to exploit a wide range of light niches. Some strains are capable of Type IV chromatic acclimation (CA4), a process by which cells can match the phycobilin content of their phycobilisomes to the ambient light quality. Here, we performed extensive genomic comparisons to explore the diversity of this process within the marine Synechococcus radiation. A specific gene island was identified in all CA4-performing strains, containing two genes (fciA/b) coding for possible transcriptional regulators and one gene coding for a phycobilin lyase. However, two distinct configurations of this cluster were observed, depending on the lineage. CA4-A islands contain the mpeZ gene, encoding a recently characterized phycoerythrobilin lyase-isomerase, and a third, small, possible regulator called fciC. In CA4-B islands, the lyase gene encodes an uncharacterized relative of MpeZ, called MpeW. While mpeZ is expressed more in blue light than green light, this is the reverse for mpeW, although only small phenotypic differences were found among chromatic acclimaters possessing either CA4 island type. This study provides novel insights into understanding both diversity and evolution of the CA4 process. International audience

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    Other literature type . Article . 2013 . Peer-reviewed
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    Authors: Živana Ninčević Gladan; Jasna Arapov; Silvia Casabianca; Antonella Penna; +13 Authors

    tela Bay. In order to taxonomically identify the Ostreopsis species responsible for this event and determine their toxin profile, cells collected in seawater and from benthic macroalgae were analyzed. Conservative taxonomic methods (light microscopy and SEM) and molecular methods (PCR-based assay) allowed the identification of the species Ostreopsis cf. ovata associated with Coolia monotis. The abundance of O. cf. ovata reached 2.9 × high-resolution mass spectrometry (LC-HRMS) were used to determine the toxin profile. The ELISA assay revealed the presence of 5.6 pg palytoxin (PLTX) equivalents per O. cf. ovata cell. LC-HRMS was used for further characterization of the toxin profile, which showed that there were 6.3 pg of the sum of ovatoxins (OVTXs) and isobaric PLTX per O. cf. ovata cell, with a prevalence of OVTXs (6.2 pg cell&minus 1 of macroalgae dry weight. An indirect sandwich immunoenzymatic assay (ELISA) and liquid chromatography&ndash In September 2015, a massive occurrence of the Ostreopsis species was recorded in central Adriatic Ka&scaron 1). Among OVTXs, the highest concentration was recorded for OVTX-a (3.6 pg cell&minus 1 in seawater, while on macroalgae, it was estimated to be up to 2.67 × 1), while the isobaric PLTX concentration was very low (0.1 pg cell&minus 1 of macroalgae fresh weight and 14.4 × 1), followed by OVTX-b (1.3 pg cell&minus 1), and OVTX-c (0.2 pg cell&minus 1), OVTX-d (1.1 pg cell&minus 104 cells L&minus 106 cells g&minus 1).

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    Authors: Peranić, Josip; Moscariello, Mariagiovanna; Cuomo, Sabatino; Arbanas, Željko;

    Abstract Rainfall is a major triggering factor of landslides in flysch deposits along Europe. Physical and mechanical changes of flysch rock masses caused by the weathering process, result in a complex soil profile with residual soil typically present at the slope surface. The research encompasses residual soils from the Rjecina River Valley in Croatia. Built in flysch deposits, the valley is known for several deep-seated and shallow historical landslides. This manuscript presents the hydro-mechanical properties of the soil existing in unsaturated zone of the slope that could play an important role in landslide activation on flysch slopes. Presented unsaturated soil property functions are essential for modelling of the transient rainfall infiltration process and how it affects the stability of flysch slopes in time. For the first time, shear strength and hydraulic conductivity determination were performed in saturated and unsaturated soil conditions, using both the intact as well as remolded samples of the residual soil form flysch rock mass. The results indicate that, in order to correctly define hydraulic and mechanical properties of the in-situ soil, measurements have to be performed on intact samples. Also, the presented results highlight the importance of hysteresis effects and hydraulic paths that fine-grained residual soil has been subjected to in the past.

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    Authors: Rachel A. Bertram; David J. Wilson; Tina van de Flierdt; Robert M. McKay; +6 Authors

    Significantly reduced ice coverage in Greenland and West Antarctica during the warmer-than-present Pliocene could account for ∼10 m of global mean sea level rise. Any sea level increase beyond this would require contributions from the East Antarctic Ice Sheet (EAIS). Previous studies have presented low-resolution geochemical evidence from the geological record, suggesting repeated ice advance and retreat in low-lying areas of the EAIS such as the Wilkes Subglacial Basin. However, the rates and mechanisms of retreat events are less well constrained. Here we present orbitally-resolved marine detrital sediment provenance data, paired with ice-rafted debris and productivity proxies, during three time intervals from the middle to late Pliocene at IODP Site U1361A, offshore of the Wilkes Subglacial Basin. Our new data reveal that Pliocene shifts in sediment provenance were paralleled by increases in marine productivity, while the onset of such changes was marked by peaks in ice-rafted debris mass accumulation rates. The coincidence of sediment provenance and marine productivity change argues against a switch in sediment delivery between ice streams, and instead suggests that deglacial warming triggered increased rates of iceberg calving, followed by inland retreat of the ice margin. Timescales from the onset of deglaciation to an inland retreated ice margin within the Wilkes Subglacial Basin are on the order of several thousand years. This geological evidence corroborates retreat rates determined from ice sheet modeling, and a contribution of ∼3 to 4 m of equivalent sea level rise from one of the most vulnerable areas of the East Antarctic Ice Sheet during interglacial intervals throughout the middle to late Pliocene. Provenance analysis was supported by a Kristian Gerhard Jebsen PhD Scholarship and NERC UK IODP grants (NE/H025162/1 and NE/H014144/1). Biogenic silica data was supported by a Royal Society of New Zealand Marsden FastStart grant (#UOO-1315) and a University of Otago PhD Scholarship. Support for sedimentology analysis was provided by the Royal Society of New Zealand Rutherford Discovery Fellowship (RDF-13-VUW-003). XRF work was supported by the Ministry of Science and Innovation Grant CTM2014-60451-C2-1-P co-financed by the European Regional Development Fund (FEDER). Samples were provided by the Integrated Ocean Drilling Program. The authors acknowledge two anonymous reviewers whose thoughtful comments helped improve the manuscript.

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    Earth and Planetary Science Letters
    Article . 2018 . Peer-reviewed
    License: CC BY
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    UCL Discovery
    Article . 2018
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      Earth and Planetary Science Letters
      Article . 2018 . Peer-reviewed
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      UCL Discovery
      Article . 2018
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    Authors: Ivica Vilibić; Hrvoje Mihanović; Ivica Janeković; Cléa Denamiel; +14 Authors

    Abstract. The paper investigates wintertime dynamics of the coastal northeastern Adriatic Sea, and is based on numerical modelling and in situ data collected through field campaigns executed during the winter and spring of 2015. The data have been collected by a variety of instruments and platforms (ADCPs, CTDs, glider, profiling float), and have been accompanied with a one-way coupled ALADIN/ROMS modelling effort. Research focus has been put on dense water formation (DWF), thermal changes and circulation, and water exchange between the coastal and open Adriatic. According to both observations and modelling results, dense waters are formed in the northeastern coastal Adriatic during cold bora outbreaks, even during milder-than-average winters (as was the winter of 2015). However, dense water formed in this coastal region has, due to lower salinities, lower densities than dense water formed at the open Adriatic. Since the sea is deeper in the coastal area than at the open Adriatic, dense waters from the open Adriatic occasionally enter the coastal area near the bottom of the connecting passages, while the surface flow is mostly outward from the coastal area. Median residence time of the coastal area is estimated to about 1–2 months, indicating that the coastal area may be relatively quickly renewed by the open Adriatic waters. The model significantly underestimates currents and transports in connecting channels, which may be a result of a too coarse resolution of atmospheric forcing, misrepresentation of bathymetry or absence of the air-sea feedback in the model. Obtained data represents a comprehensive marine dataset, pointing to a number of interesting phenomena to be investigated in the future.

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    https://doi.org/10.5194/os-201...
    Preprint . 2017
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    https://www.ocean-sci.net/14/2...
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      https://doi.org/10.5194/os-201...
      Preprint . 2017
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      https://www.ocean-sci.net/14/2...
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    Authors: Ivan Lončar; Anja Babić; Barbara Arbanas; Goran Vasiljevic; +3 Authors

    This paper describes an underwater acoustic sensor network consisting of a heterogeneous robotic swarm used for long-term monitoring of underwater environments. The swarm consists of a large number of underwater robots acting as sensor nodes with limited movement capabilities, and a few surface robots aiding them in accomplishing underwater monitoring scenarios. Main interactions between two types of robots include underwater sensor deployment and relocation, energy and data exchange, and acoustic localisation aiding. Hardware capabilities of each vehicle are described in detail. Inter-agent communication is split into two layers: surface and underwater communication. Surface communication utilises wireless communication using WiFi routers configured for decentralised routing. Underwater communication mainly uses acoustic communication which, when used within a large swarm, poses a challenging task because of high probability of interference and data loss. The acoustic communication protocol used to prevent these issues is presented in detail. Finally, more complex functionalities of the robotic swarm are presented, including several results from real-life experiments.

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    Applied Sciences
    Article . 2019
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: P. Zemunik; J. Šepić; H. Pellikka; L. Ćatipović; +2 Authors

    Sea-level observations provide information on a variety of processes occurring over different temporal and spatial scales that may contribute to coastal flooding and hazards. However, global research on sea-level extremes is restricted to hourly datasets, which prevent the quantification and analyses of processes occurring at timescales between a few minutes and a few hours. These shorter-period processes, like seiches, meteotsunamis, infragravity and coastal waves, may even dominate in low tidal basins. Therefore, a new global 1 min sea-level dataset – MISELA (Minute Sea-Level Analysis) – has been developed, encompassing quality-checked records of nonseismic sea-level oscillations at tsunami timescales (T<2 h) obtained from 331 tide-gauge sites (https://doi.org/10.14284/456, Zemunik et al., 2021b). This paper describes data quality control procedures applied to the MISELA dataset, world and regional coverage of tide-gauge sites, and lengths of time series. The dataset is appropriate for global, regional or local research of atmospherically induced high-frequency sea-level oscillations, which should be included in the overall sea-level extremes assessments.

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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODO; Earth System...arrow_drop_down
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    Authors: François Fripiat; Klaus M Meiners; Martin Vancoppenolle; Stathys Papadimitriou; +19 Authors

    Antarctic pack ice is inhabited by a diverse and active microbial community reliant on nutrients for growth. Seeking patterns and overlooked processes, we performed a large-scale compilation of macro-nutrient data (hereafter termed nutrients) in Antarctic pack ice (306 ice-cores collected from 19 research cruises). Dissolved inorganic nitrogen and silicic acid concentrations change with time, as expected from a seasonally productive ecosystem. In winter, salinity-normalized nitrate and silicic acid concentrations (C∗) in sea ice are close to seawater concentrations (Cw), indicating little or no biological activity. In spring, nitrate and silicic acid concentrations become partially depleted with respect to seawater (C∗ Cw). The phosphate excess could be explained by a greater allocation to phosphorus-rich biomolecules during ice algal blooms coupled with convective loss of excess dissolved nitrogen, preferential remineralization of phosphorus, and/or phosphate adsorption onto metal-organic complexes. Ammonium also appears to be efficiently adsorbed onto organic matter, with likely consequences to nitrogen mobility and availability. This dataset supports the view that the sea ice microbial community is highly efficient at processing nutrients but with a dynamic quite different from that in oceanic surface waters calling for focused future investigations. info:eu-repo/semantics/published SCOPUS: ar.j

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    CNR ExploRA; Elementa: Science of the Anthropocene
    Article . 2017 . Peer-reviewed
    License: CC BY
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    DOAJ
    Article . 2017
    Data sources: DOAJ
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    DI-fusion
    Article . 2017 . Peer-reviewed
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    Hal-Diderot
    Article . 2017
    Data sources: Hal-Diderot
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      CNR ExploRA; Elementa: Science of the Anthropocene
      Article . 2017 . Peer-reviewed
      License: CC BY
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      DOAJ
      Article . 2017
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      DI-fusion
      Article . 2017 . Peer-reviewed
      Data sources: DI-fusion
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      Hal-Diderot
      Article . 2017
      Data sources: Hal-Diderot
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    Authors: Nadja Triesch; Manuela van Pinxteren; Sanja Frka; Christian Stolle; +7 Authors

    In the marine environment, measurements of lipids as representative species within different lipid classes have been performed to characterize their oceanic sources and their transfer from the ocean into the atmosphere to marine aerosol particles. The set of lipid classes includes hydrocarbons (HC); fatty acid methyl esters (ME); free fatty acids (FFA); alcohols (ALC); 1,3-diacylglycerols (1,3 DG); 1,2-diacylglycerols (1,2 DG); monoacylglycerols (MG); wax esters (WE); triacylglycerols (TG); and phospholipids (PP) including phosphatidylglycerols (PG), phosphatidylethanolamine (PE), phosphatidylcholines (PC), as well as glycolipids (GL) which cover sulfoquinovosyldiacylglycerols (SQDG), monogalactosyl-diacylglycerols (MGDG), digalactosyldiacylglycerols (DGDG) and sterols (ST). These introduced lipid classes have been analyzed in the dissolved and particulate fraction of seawater, differentiating between underlying water (ULW) and the sea surface microlayer (SML) on the one hand. On the other hand, they have been examined on ambient submicrometer aerosol particle samples (PM1) which were collected at the Cape Verde Atmospheric Observatory (CVAO) by applying concerted measurements. These different lipids are found in all marine compartments but in different compositions. Along the campaign, certain variabilities are observed for the concentration of dissolved (∑DLULW: 39.8–128.5 µg L−1, ∑DLSML: 55.7–121.5 µg L−1) and particulate (∑PLULW: 36.4–93.5 µg L−1, ∑PLSML: 61.0–118.1 µg L−1) lipids in the seawater of the tropical North Atlantic Ocean. Only slight SML enrichments are observed for the lipids with an enrichment factor EFSML of 1.1–1.4 (DL) and 1.0–1.7 (PL). On PM1 aerosol particles, a total lipid concentration between 75.2–219.5 ng m−3 (averaged: 119.9 ng m−3) is measured. As also bacteria – besides phytoplankton sources – influence the lipid concentrations in seawater and on the aerosol particles, the lipid abundance cannot be exclusively explained by the phytoplankton tracer (chlorophyll a). The concentration and enrichment of lipids in the SML are not related to physicochemical properties which describe the surface activity. On the aerosol particles, an EFaer (the enrichment factor on the submicrometer aerosol particles compared to the SML) between 9×104–7×105 is observed. Regarding the individual lipid groups on the aerosol particles, a statistically significant correlation (R2=0.45, p=0.028) was found between EFaer and lipophilicity (expressed by the KOW value), which was not present for the SML. But simple physicochemical descriptors are overall not sufficient to fully explain the transfer of lipids. As our findings show that additional processes such as formation and degradation influence the ocean–atmosphere transfer of both OM in general and of lipids in particular, they have to be considered in OM transfer models. Moreover, our data suggest that the extent of the enrichment of the lipid class constituents on the aerosol particles might be related to the distribution of the lipid within the bubble–air–water interface. The lipids TG and ALC which are preferably arranged within the bubble interface are transferred to the aerosol particles to the highest extent. Finally, the connection between ice nucleation particles (INPs) in seawater, which are already active at higher temperatures (−10 to −15 ∘C), and the lipid classes PE and FFA suggests that lipids formed in the ocean have the potential to contribute to (biogenic) INP activity when transferred into the atmosphere.

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    Croatian Scientific Bibliography - CROSBI
    Article . Preprint . 2020 . 2021 . Peer-reviewed
    License: CC BY
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      Croatian Scientific Bibliography - CROSBI
      Article . Preprint . 2020 . 2021 . Peer-reviewed
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    Authors: Claudia Kruschel; Stewart T. Schultz;

    We performed over 19,000 lure-assisted, underwater visual fish census transects at over 140 shallow coastal sampling locations in the mid- eastern Adriatic sea of the Croatian mainland and islands, recording all fish taxa observed, their predatory behavior in response to the lure, and the cover of benthic habitats with which they were associated. We hypothesized that prey habitat preference was a learned or selected response to aggressive behavior by piscivorous mesopredators, and predicted that mobile prey would be spatially segregated from aggressive predators into different benthic habitats within local sampling sites. We found that aggressive piscivores were primarily wait-chase or cruise-chase mesopredators that preferentially foraged along heterogeneous habitat edges within juxtapositions of rock, unconsolidated sediment, macroalgae (Cystoseira spp.) and seagrass (usually Posidonia oceanica). Prey species and less aggressive piscivores avoided these heterogeneous habitats and preferred more homogeneous habitats that the aggressive predators in turn avoided. We found strong and consistent spatial segregation between aggressive predators on the one hand, and less aggressive predators and prey on the other hand. These results are consistent with the hypothesis that aggressive behavior by piscivorous species is the primary organizing force shaping assembly of fish communities at our study sites, driving preference and occupancy of heterogeneous and homogeneous benthic habitats. Management of shallow benthic resources should recognize the value of complementarity in habitats allowing coexistence of predators and prey through contrasting habitat preferences.

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    Other literature type . Article . 2020 . Peer-reviewed
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    Article . 2020
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    Article . 2020
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    Authors: Florian Humily; Frédéric Partensky; Christophe Six; Gregory K. Farrant; +3 Authors

    Synechococcus, the second most abundant oxygenic phototroph in the marine environment, harbors the largest pigment diversity known within a single genus of cyanobacteria, allowing it to exploit a wide range of light niches. Some strains are capable of Type IV chromatic acclimation (CA4), a process by which cells can match the phycobilin content of their phycobilisomes to the ambient light quality. Here, we performed extensive genomic comparisons to explore the diversity of this process within the marine Synechococcus radiation. A specific gene island was identified in all CA4-performing strains, containing two genes (fciA/b) coding for possible transcriptional regulators and one gene coding for a phycobilin lyase. However, two distinct configurations of this cluster were observed, depending on the lineage. CA4-A islands contain the mpeZ gene, encoding a recently characterized phycoerythrobilin lyase-isomerase, and a third, small, possible regulator called fciC. In CA4-B islands, the lyase gene encodes an uncharacterized relative of MpeZ, called MpeW. While mpeZ is expressed more in blue light than green light, this is the reverse for mpeW, although only small phenotypic differences were found among chromatic acclimaters possessing either CA4 island type. This study provides novel insights into understanding both diversity and evolution of the CA4 process. International audience

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    DOAJ
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    PLoS ONE
    Other literature type . Article . 2013 . Peer-reviewed
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    Authors: Živana Ninčević Gladan; Jasna Arapov; Silvia Casabianca; Antonella Penna; +13 Authors

    tela Bay. In order to taxonomically identify the Ostreopsis species responsible for this event and determine their toxin profile, cells collected in seawater and from benthic macroalgae were analyzed. Conservative taxonomic methods (light microscopy and SEM) and molecular methods (PCR-based assay) allowed the identification of the species Ostreopsis cf. ovata associated with Coolia monotis. The abundance of O. cf. ovata reached 2.9 × high-resolution mass spectrometry (LC-HRMS) were used to determine the toxin profile. The ELISA assay revealed the presence of 5.6 pg palytoxin (PLTX) equivalents per O. cf. ovata cell. LC-HRMS was used for further characterization of the toxin profile, which showed that there were 6.3 pg of the sum of ovatoxins (OVTXs) and isobaric PLTX per O. cf. ovata cell, with a prevalence of OVTXs (6.2 pg cell&minus 1 of macroalgae dry weight. An indirect sandwich immunoenzymatic assay (ELISA) and liquid chromatography&ndash In September 2015, a massive occurrence of the Ostreopsis species was recorded in central Adriatic Ka&scaron 1). Among OVTXs, the highest concentration was recorded for OVTX-a (3.6 pg cell&minus 1 in seawater, while on macroalgae, it was estimated to be up to 2.67 × 1), while the isobaric PLTX concentration was very low (0.1 pg cell&minus 1 of macroalgae fresh weight and 14.4 × 1), followed by OVTX-b (1.3 pg cell&minus 1), and OVTX-c (0.2 pg cell&minus 1), OVTX-d (1.1 pg cell&minus 104 cells L&minus 106 cells g&minus 1).

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    Toxins
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    DOAJ
    Article . 2019
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    Authors: Peranić, Josip; Moscariello, Mariagiovanna; Cuomo, Sabatino; Arbanas, Željko;

    Abstract Rainfall is a major triggering factor of landslides in flysch deposits along Europe. Physical and mechanical changes of flysch rock masses caused by the weathering process, result in a complex soil profile with residual soil typically present at the slope surface. The research encompasses residual soils from the Rjecina River Valley in Croatia. Built in flysch deposits, the valley is known for several deep-seated and shallow historical landslides. This manuscript presents the hydro-mechanical properties of the soil existing in unsaturated zone of the slope that could play an important role in landslide activation on flysch slopes. Presented unsaturated soil property functions are essential for modelling of the transient rainfall infiltration process and how it affects the stability of flysch slopes in time. For the first time, shear strength and hydraulic conductivity determination were performed in saturated and unsaturated soil conditions, using both the intact as well as remolded samples of the residual soil form flysch rock mass. The results indicate that, in order to correctly define hydraulic and mechanical properties of the in-situ soil, measurements have to be performed on intact samples. Also, the presented results highlight the importance of hysteresis effects and hydraulic paths that fine-grained residual soil has been subjected to in the past.

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    Authors: Rachel A. Bertram; David J. Wilson; Tina van de Flierdt; Robert M. McKay; +6 Authors

    Significantly reduced ice coverage in Greenland and West Antarctica during the warmer-than-present Pliocene could account for ∼10 m of global mean sea level rise. Any sea level increase beyond this would require contributions from the East Antarctic Ice Sheet (EAIS). Previous studies have presented low-resolution geochemical evidence from the geological record, suggesting repeated ice advance and retreat in low-lying areas of the EAIS such as the Wilkes Subglacial Basin. However, the rates and mechanisms of retreat events are less well constrained. Here we present orbitally-resolved marine detrital sediment provenance data, paired with ice-rafted debris and productivity proxies, during three time intervals from the middle to late Pliocene at IODP Site U1361A, offshore of the Wilkes Subglacial Basin. Our new data reveal that Pliocene shifts in sediment provenance were paralleled by increases in marine productivity, while the onset of such changes was marked by peaks in ice-rafted debris mass accumulation rates. The coincidence of sediment provenance and marine productivity change argues against a switch in sediment delivery between ice streams, and instead suggests that deglacial warming triggered increased rates of iceberg calving, followed by inland retreat of the ice margin. Timescales from the onset of deglaciation to an inland retreated ice margin within the Wilkes Subglacial Basin are on the order of several thousand years. This geological evidence corroborates retreat rates determined from ice sheet modeling, and a contribution of ∼3 to 4 m of equivalent sea level rise from one of the most vulnerable areas of the East Antarctic Ice Sheet during interglacial intervals throughout the middle to late Pliocene. Provenance analysis was supported by a Kristian Gerhard Jebsen PhD Scholarship and NERC UK IODP grants (NE/H025162/1 and NE/H014144/1). Biogenic silica data was supported by a Royal Society of New Zealand Marsden FastStart grant (#UOO-1315) and a University of Otago PhD Scholarship. Support for sedimentology analysis was provided by the Royal Society of New Zealand Rutherford Discovery Fellowship (RDF-13-VUW-003). XRF work was supported by the Ministry of Science and Innovation Grant CTM2014-60451-C2-1-P co-financed by the European Regional Development Fund (FEDER). Samples were provided by the Integrated Ocean Drilling Program. The authors acknowledge two anonymous reviewers whose thoughtful comments helped improve the manuscript.

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    Earth and Planetary Science Letters
    Article . 2018 . Peer-reviewed
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    UCL Discovery
    Article . 2018
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      Earth and Planetary Science Letters
      Article . 2018 . Peer-reviewed
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      UCL Discovery
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    Authors: Ivica Vilibić; Hrvoje Mihanović; Ivica Janeković; Cléa Denamiel; +14 Authors

    Abstract. The paper investigates wintertime dynamics of the coastal northeastern Adriatic Sea, and is based on numerical modelling and in situ data collected through field campaigns executed during the winter and spring of 2015. The data have been collected by a variety of instruments and platforms (ADCPs, CTDs, glider, profiling float), and have been accompanied with a one-way coupled ALADIN/ROMS modelling effort. Research focus has been put on dense water formation (DWF), thermal changes and circulation, and water exchange between the coastal and open Adriatic. According to both observations and modelling results, dense waters are formed in the northeastern coastal Adriatic during cold bora outbreaks, even during milder-than-average winters (as was the winter of 2015). However, dense water formed in this coastal region has, due to lower salinities, lower densities than dense water formed at the open Adriatic. Since the sea is deeper in the coastal area than at the open Adriatic, dense waters from the open Adriatic occasionally enter the coastal area near the bottom of the connecting passages, while the surface flow is mostly outward from the coastal area. Median residence time of the coastal area is estimated to about 1–2 months, indicating that the coastal area may be relatively quickly renewed by the open Adriatic waters. The model significantly underestimates currents and transports in connecting channels, which may be a result of a too coarse resolution of atmospheric forcing, misrepresentation of bathymetry or absence of the air-sea feedback in the model. Obtained data represents a comprehensive marine dataset, pointing to a number of interesting phenomena to be investigated in the future.

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    https://doi.org/10.5194/os-201...
    Preprint . 2017
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      https://www.ocean-sci.net/14/2...
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    Authors: Ivan Lončar; Anja Babić; Barbara Arbanas; Goran Vasiljevic; +3 Authors

    This paper describes an underwater acoustic sensor network consisting of a heterogeneous robotic swarm used for long-term monitoring of underwater environments. The swarm consists of a large number of underwater robots acting as sensor nodes with limited movement capabilities, and a few surface robots aiding them in accomplishing underwater monitoring scenarios. Main interactions between two types of robots include underwater sensor deployment and relocation, energy and data exchange, and acoustic localisation aiding. Hardware capabilities of each vehicle are described in detail. Inter-agent communication is split into two layers: surface and underwater communication. Surface communication utilises wireless communication using WiFi routers configured for decentralised routing. Underwater communication mainly uses acoustic communication which, when used within a large swarm, poses a challenging task because of high probability of interference and data loss. The acoustic communication protocol used to prevent these issues is presented in detail. Finally, more complex functionalities of the robotic swarm are presented, including several results from real-life experiments.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Applied Sciences; Cr...arrow_drop_down
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    Applied Sciences
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    Applied Sciences
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    Article . 2019
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