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193 Research products

  • European Marine Science
  • 2014-2023
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  • European Marine Science

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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Trouche, Blandine;

    Anvi'o databases of the 47 ammonia-oxidizing archaea MAGs from abyssal and hadal surface sediments presented in Trouche et al, 2023 (https://doi.org/10.1038/s43705-023-00341-6). 

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    ZENODO
    Other ORP type . 2023
    License: CC BY
    Data sources: ZENODO
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      ZENODO
      Other ORP type . 2023
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Martínez Moreno, Josué;

    This dataset includes the NEMO 4.0.2 configuration used and analysed in the paper titled "Eddy-driven heterogeneity in sea ice during the ice-growth season". The output data is approximately 4TB for the 3 idealised configuration used in the manuscript, thus we opted to distribute the configuration. Note: The initial conditions for each simulation are compressed into the file `init_cond.zip` The configuration for one of the simulations is compressed in the file `config.zip` In order to reproduce all the runs, it's only required to change the initial conditions in the file namelist_cfg and namelist_ice_cfg. Further information and scripts to reproduce the result of the manuscript can be found at: https://github.com/josuemtzmo/Ice_formation

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    ZENODO
    Model . 2023
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      ZENODO
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Paul Myers;

    Animation of the thickness of Pacific Water throughout the upper 150 m of Baffin Bay, in metres, based upon a passive tracer included with a 1/12 degree NEMO model simulation of the Arctic and North Atlantic (ANHA12-EXH006).

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    Authors: Burkard, Annika;

    This thesis analyzes the flight across the sea in the context of the refugee crisis in 2015/ 2016 in German film and literature. The works chosen are Wolfgang Fischer’s film Styx from 2018, Reinhard Kleist’s graphic novel Der Traum von Olympia (An Olympic Dream) from 2015, and Merle Kröger’s crime novel Havarie (Collision) from 2015. Common motives in the works are the depiction of Europe as a paradise from the refugee’s perspective and the contrast between vacationing and bare survival. However, each author/director based their unique narrative method not only on the medium and genre of delivery but also on choices of narrative perspective. This thesis examines the differences in the narrative methods and gives special attention to the emotional, cognitive, ethical, and political steerings of the recipients. In all works, the steering of the recipients is linked to political topics such as the concepts of agency, solidarity, human rights, and precarity. Furthermore, this thesis examines the depiction of Europe, its responsibilities, and the traces of colonialism as projected in film and literature. At the end of the thesis, I reflect on the representation of the sea, which becomes a political place, a dangerous border region or a resort for vacation in the works.

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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Vigneron, Adrien; Cruaud, Perrine; Lovejoy, Connie; Vincent, Warwick F.;

    Background: Cyanobacteria and eukaryotic phytoplankton produce long-chain alkanes and generate around 100 times greater quantities of hydrocarbons in the ocean compared to natural seeps and anthropogenic sources. Yet, these compounds do not accumulate in the water column, suggesting rapid biodegradation by co-localized microbial populations. Despite their ecological importance, the identities of microbes involved in this cryptic hydrocarbon cycle are mostly unknown. Here, we identifed genes encoding enzymes involved in the hydrocarbon cycle across the salinity gradient of a remote, vertically stratifed, seawater-containing High Arctic lake that is isolated from anthropogenic petroleum sources and natural seeps. Metagenomic analysis revealed diverse hydrocarbon cycling genes and populations, with patterns of variation along gradients of light, salinity, oxygen, and sulfur that are relevant to freshwater, oceanic, hadal, and anoxic deep sea ecosystems. Results Analyzing genes and metagenome-assembled genomes down the water column of Lake A in the Canadian High Arctic, we detected microbial hydrocarbon production and degradation pathways at all depths, from surface freshwaters to dark, saline, anoxic waters. In addition to Cyanobacteria, members of the phyla Flavobacteria, Nitrospina, Deltaproteobacteria, Planctomycetes, and Verrucomicrobia had pathways for alkane and alkene production, providing additional sources of biogenic hydrocarbons. Known oil-degrading microorganisms were poorly represented in the system, while long-chain hydrocarbon degradation genes were identifed in various freshwater and marine lineages such as Actinobacteria, Schleiferiaceae, and Marinimicrobia. Genes involved in sulfur and nitrogen compound transformations were abundant in hydrocarbon producing and degrading lineages, suggesting strong interconnections with nitrogen and sulfur cycles and a potential for widespread distribution in the ocean. Conclusions Our detailed metagenomic analyses across water column gradients in a remote petroleum-free lake derived from the Arctic Ocean suggest that the current estimation of bacterial hydrocarbon production in the ocean could be substantially underestimated by neglecting non-phototrophic production and by not taking low oxygen zones into account. Our fndings also suggest that biogenic hydrocarbons may sustain a large fraction of freshwater and oceanic microbiomes, with global biogeochemical implications for carbon, sulfur, and nitrogen cycles.

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    CorpusUL
    Other ORP type . 2023
    Data sources: CorpusUL
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  • Authors: Anhaus, Philipp; Schiller, Martin; Planat, Noémie; Katlein, Christian; +1 Authors

    The distance between a remotely operated vehicle (ROV) and the sea-ice underside was measured by a single-beam upward-looking acoustic sonar altimeter (Tritech PA500) attached to the ROV during the ARTofMELT2023 expedition in May and June 2023. Sea-ice draft was derived by subtracting the distance to the sea-ice underside from the ROV depth, uncorrected for ROV attitude (pitch, roll). An offset between the depth reference (ROV bumper bars) and the altimeter of 0.105 m is accounted for in the presented data.

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    Authors: Luostarinen, Tiia; Weckström, Kaarina; Ehn, Jens K; Kamula, Michelle; +6 Authors

    Datasets collected during a field campaign in the Belcher Islands Archipelago, Hudson Bay, Canada, during spring and summer 2019 including sea ice, water column, sediment trap and surface sediment samples that were analysed for diatoms, dinoflagellate cysts, highly branched isoprenoid lipids, pigments and geochemistry. The sea ice samples were collected using a Kovacs Mark II core barrel with an internal diameter of 9 cm, and the bottom 5 cm of the sea-ice cores were used for analysis on each sampling day. The water sampling was conducted using a plankton net (Ø 18 cm, 10 µm, 30-m net haul; diatoms) and a 2,5 L Kemmerer water sampler (pooled sample from 2.5-, 5-, 10-, 15-, 20-, 25- and 30-metre depths; highly branched isoprenoid lipids). For sediment trap samples, an automated Gurney Instruments Baker-style, cylindrical sediment trap (aperture 0.032 m2) was deployed at 40-m depth, 30-m above the seafloor and the rotation for the trap was set to 8-day intervals. The surface sediment sample was collected using a Kajak-Brinkhurst gravity corer. The under-ice salinities and temperatures were measured by using with RBR Concerto® and CastAway-CTD® sensors.

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  • Authors: Anhaus, Philipp; Schiller, Martin; Planat, Noémie; Katlein, Christian; +1 Authors

    Attention points as logged by the operators in the recording software Spot.On for remotely operated vehicle (ROV) surveys during the ARTofMELT2023 expedition in May and June 2023.

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    Authors: Bouchet, Marie; Landais, Amaëlle; Grisart, Antoine; Parrenin, Frédéric; +15 Authors

    We present the new reference chronology (AICC2023) providing an age vs depth relationship covering the last 800 kyr (thousands of years) for five ice cores (EDC, EDML, NGRIP, TALDICE and Vostok). To construct the new AICC2023 chronology, we used new highly resolved measurements for EDC ice core as well as novel absolute 81Kr ages, stratigraphic links between the five ice cores and accurate firn modeling estimates. The new chronological and glaciological information were combined in the Bayesian dating tool Paleochrono to obtain the AICC2023 timescale.

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    Authors: Rodriguez-Cuicas, Maria-Emilia; Montero-Serrano, Jean-Carlos; St-Onge, Guillaume; Normandeau, Alexandre;

    Two composite sedimentary sequences (AMD2019-804-12CS and AMD1803-02CS) sampled in Coronation Fjord (Baffin Island, Nunavut, Canada) were investigated. These sequences were collected onboard the Canadian Coast Guard Ship icebreaker Amundsen during the 2018 and 2019 ArcticNet expedition to reconstruct long-term changes in sediment transfers from the Penny Ice Cap (PIC) during the late Holocene. Grain size datasets comprising the complete data of sediment grain size analyses (2 mm fraction on the X-CT scan images of the core in contiguous 2 cm windows.

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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Trouche, Blandine;

    Anvi'o databases of the 47 ammonia-oxidizing archaea MAGs from abyssal and hadal surface sediments presented in Trouche et al, 2023 (https://doi.org/10.1038/s43705-023-00341-6). 

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    ZENODO
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      ZENODO
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    Authors: Martínez Moreno, Josué;

    This dataset includes the NEMO 4.0.2 configuration used and analysed in the paper titled "Eddy-driven heterogeneity in sea ice during the ice-growth season". The output data is approximately 4TB for the 3 idealised configuration used in the manuscript, thus we opted to distribute the configuration. Note: The initial conditions for each simulation are compressed into the file `init_cond.zip` The configuration for one of the simulations is compressed in the file `config.zip` In order to reproduce all the runs, it's only required to change the initial conditions in the file namelist_cfg and namelist_ice_cfg. Further information and scripts to reproduce the result of the manuscript can be found at: https://github.com/josuemtzmo/Ice_formation

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    Authors: Paul Myers;

    Animation of the thickness of Pacific Water throughout the upper 150 m of Baffin Bay, in metres, based upon a passive tracer included with a 1/12 degree NEMO model simulation of the Arctic and North Atlantic (ANHA12-EXH006).

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    Authors: Burkard, Annika;

    This thesis analyzes the flight across the sea in the context of the refugee crisis in 2015/ 2016 in German film and literature. The works chosen are Wolfgang Fischer’s film Styx from 2018, Reinhard Kleist’s graphic novel Der Traum von Olympia (An Olympic Dream) from 2015, and Merle Kröger’s crime novel Havarie (Collision) from 2015. Common motives in the works are the depiction of Europe as a paradise from the refugee’s perspective and the contrast between vacationing and bare survival. However, each author/director based their unique narrative method not only on the medium and genre of delivery but also on choices of narrative perspective. This thesis examines the differences in the narrative methods and gives special attention to the emotional, cognitive, ethical, and political steerings of the recipients. In all works, the steering of the recipients is linked to political topics such as the concepts of agency, solidarity, human rights, and precarity. Furthermore, this thesis examines the depiction of Europe, its responsibilities, and the traces of colonialism as projected in film and literature. At the end of the thesis, I reflect on the representation of the sea, which becomes a political place, a dangerous border region or a resort for vacation in the works.

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    Authors: Vigneron, Adrien; Cruaud, Perrine; Lovejoy, Connie; Vincent, Warwick F.;

    Background: Cyanobacteria and eukaryotic phytoplankton produce long-chain alkanes and generate around 100 times greater quantities of hydrocarbons in the ocean compared to natural seeps and anthropogenic sources. Yet, these compounds do not accumulate in the water column, suggesting rapid biodegradation by co-localized microbial populations. Despite their ecological importance, the identities of microbes involved in this cryptic hydrocarbon cycle are mostly unknown. Here, we identifed genes encoding enzymes involved in the hydrocarbon cycle across the salinity gradient of a remote, vertically stratifed, seawater-containing High Arctic lake that is isolated from anthropogenic petroleum sources and natural seeps. Metagenomic analysis revealed diverse hydrocarbon cycling genes and populations, with patterns of variation along gradients of light, salinity, oxygen, and sulfur that are relevant to freshwater, oceanic, hadal, and anoxic deep sea ecosystems. Results Analyzing genes and metagenome-assembled genomes down the water column of Lake A in the Canadian High Arctic, we detected microbial hydrocarbon production and degradation pathways at all depths, from surface freshwaters to dark, saline, anoxic waters. In addition to Cyanobacteria, members of the phyla Flavobacteria, Nitrospina, Deltaproteobacteria, Planctomycetes, and Verrucomicrobia had pathways for alkane and alkene production, providing additional sources of biogenic hydrocarbons. Known oil-degrading microorganisms were poorly represented in the system, while long-chain hydrocarbon degradation genes were identifed in various freshwater and marine lineages such as Actinobacteria, Schleiferiaceae, and Marinimicrobia. Genes involved in sulfur and nitrogen compound transformations were abundant in hydrocarbon producing and degrading lineages, suggesting strong interconnections with nitrogen and sulfur cycles and a potential for widespread distribution in the ocean. Conclusions Our detailed metagenomic analyses across water column gradients in a remote petroleum-free lake derived from the Arctic Ocean suggest that the current estimation of bacterial hydrocarbon production in the ocean could be substantially underestimated by neglecting non-phototrophic production and by not taking low oxygen zones into account. Our fndings also suggest that biogenic hydrocarbons may sustain a large fraction of freshwater and oceanic microbiomes, with global biogeochemical implications for carbon, sulfur, and nitrogen cycles.

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  • Authors: Anhaus, Philipp; Schiller, Martin; Planat, Noémie; Katlein, Christian; +1 Authors

    The distance between a remotely operated vehicle (ROV) and the sea-ice underside was measured by a single-beam upward-looking acoustic sonar altimeter (Tritech PA500) attached to the ROV during the ARTofMELT2023 expedition in May and June 2023. Sea-ice draft was derived by subtracting the distance to the sea-ice underside from the ROV depth, uncorrected for ROV attitude (pitch, roll). An offset between the depth reference (ROV bumper bars) and the altimeter of 0.105 m is accounted for in the presented data.

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    Authors: Luostarinen, Tiia; Weckström, Kaarina; Ehn, Jens K; Kamula, Michelle; +6 Authors

    Datasets collected during a field campaign in the Belcher Islands Archipelago, Hudson Bay, Canada, during spring and summer 2019 including sea ice, water column, sediment trap and surface sediment samples that were analysed for diatoms, dinoflagellate cysts, highly branched isoprenoid lipids, pigments and geochemistry. The sea ice samples were collected using a Kovacs Mark II core barrel with an internal diameter of 9 cm, and the bottom 5 cm of the sea-ice cores were used for analysis on each sampling day. The water sampling was conducted using a plankton net (Ø 18 cm, 10 µm, 30-m net haul; diatoms) and a 2,5 L Kemmerer water sampler (pooled sample from 2.5-, 5-, 10-, 15-, 20-, 25- and 30-metre depths; highly branched isoprenoid lipids). For sediment trap samples, an automated Gurney Instruments Baker-style, cylindrical sediment trap (aperture 0.032 m2) was deployed at 40-m depth, 30-m above the seafloor and the rotation for the trap was set to 8-day intervals. The surface sediment sample was collected using a Kajak-Brinkhurst gravity corer. The under-ice salinities and temperatures were measured by using with RBR Concerto® and CastAway-CTD® sensors.

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  • Authors: Anhaus, Philipp; Schiller, Martin; Planat, Noémie; Katlein, Christian; +1 Authors

    Attention points as logged by the operators in the recording software Spot.On for remotely operated vehicle (ROV) surveys during the ARTofMELT2023 expedition in May and June 2023.

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