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  • Authors: Eduardo Azevedo-Silva, Claudio; Carolina Pizzochero, Ana; Galvão, Petrus M A; Ometto, Jean P H B; +7 Authors

    Information on pollutant trophodynamics can be crucial for public health, as contaminated food consumption may lead to deleterious effects. This study was performed in Puruzinho Lake, a remote body of water in the Brazilian Amazon from which a riparian human population obtains an important part of its animal protein intake. Samples from 92 individuals, comprising 13 species and four trophic guilds (iliophagous, planktivorous, omnivorous, and piscivorous fish) were analysed for the determination of trace elements (Fe, Cr, Mn, Ni, Zn, Ca, Sr, Cd, Sn, Tl and Pb) and methylmercury concentrations. Samples from the same individuals had already been analysed for stable isotope (SI) measurements (δ13C and δ15N) in a previous investigation and the SI data have been statistically treated with those generated in this study for the evaluation of trophic dynamics of contaminants. Methylmercury was the only analyte that biomagnified, presenting TMF values of 4.65 and 4.55 for total and resident ichthyofauna, respectively. Trace elements presented either trophic dilution or independence from the trophic position, constituting a behaviour that was coherent with that found in the scientific literature. The similarity between Ni behaviour through the trophic web to that of essential elements contributes to the discussion on the essentiality of this metal to fish. Considering the Non-cancer Risk Assessment, the calculated Target Hazard Quotient (THQ) values were higher than 1.0 for all analysed individuals for methylmercury, as well as for only one individual for nickel. No other analyte rendered THQ values higher than 1.0.

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  • Authors: Vogt, Meike; Benedetti, Fabio; Sarmento, Hugo; Huber, Paula; +23 Authors
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    Authors: Pasquale Pagano; Sara Pittonet; Federico Drago; Maria Giuffrida;

    There are several research infrastructures or other data services running in Europe that cover a multitude of marine-related sciences, providing specific datasets coming from observations collected with different methods. These infrastructures constitute a diverse world, each looking at a piece of the big picture, sometimes hindering collaboration and data sharing. Blue-Cloud aims to overcome fragmentation and build a bridge between thematic science clusters - such as marine, climate, food and agriculture sciences - and EOSC, creating a data federation and providing a common access to a so-called thematic EOSC for marine data. By connecting leading marine data management infrastructures with horizontal e-infrastructures, the project aims to maximise the exploitation of data resources available from different sources. The Blue-Cloud framework consists of two major technical components: (1) a Blue-Cloud Data Discovery and Access service, already presented in a previous EOSC in practice story, to serve federated discovery and access to blue data infrastructures, and (2) a Blue-Cloud Virtual Research Environment (VRE) to provide computing platforms and analytical services facilitating the collaboration between researchers, which is detailed hereafter. The Blue-Cloud VRE is powered by the D4Science Infrastructure. [M. Assante et al. (2019) Enacting open science by D4Science. Future Gener. Comput. Syst. 101: 555-563 10.1016/j.future.2019.05.063 ] The full list of EOSC in practice stories is available here

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  • Authors: Roberty, Stéphane; Vega de Luna, Felix; Pierangelini, Mattia; Bomhals, Julie; +3 Authors

    Acclimation of corals to light is known to rely on multiple strategies working at different timescales. Among them, photosynthetic alternative electron flows (AEFs) could act as photoprotective mechanisms under fluctuating light intensities. In this work, we first compared the use of AEFs in shallow and mesophotic colonies of the coral Stylophora pistillata by carrying out joint measurements of oxygen exchange and photosystems quantum yields. We observed similar capacities to re-route photosynthetically derived electrons toward oxygen (Mehler reaction) and to perform cyclic electron flow around photosystem I under high light intensity in both colony types. But in contrast to mesophotic colonies that hosted Cladocopium, the photosynthetic apparatus of Symbiodinium microadriaticum hosted by their shallow counterparts was notably able to drive a higher number of electrons, displayed a higher thermal dissipation of absorbed light energy. Then, a short-term light stress was applied to evaluate the plasticity of the photosynthetic apparatus. Both shallow and mesophotic colonies showed fast acclimation to the low light regime. In contrast, under the high light regime, mesophotic colonies showed a limited capacity to dissipate light energy and were strongly photoinhibited, though their PSI activity was partly preserved and likely involved cyclic electron flow. This study shows how important the photosynthetic alternative electron flows are in acclimation processes to light and how the plasticity of the photosynthetic processes in Symbiodiniaceae may shape the vertical distribution of the coral holobionts.

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  • Authors: Lejeune, Benjamin; Marcout, Anna; Kopp, Dorothée; Morandeau, Fabien; +2 Authors

    Food webs are typically studied with respect to predator-prey interactions while often neglecting to address the role or importance of scavenging (i.e. carrion consumption) on their structure and functioning. In some environmental contexts, scavenging can play a key role in supporting populations and communities as exemplified by seabirds feeding on fisheries discards. Yet, a substantial part of fisheries discards sinks in the ocean where the range of consumers is most likely underestimated, owing to a lack of comprehensive understanding of the scavenging ability of marine fauna and local-scale empirical studies. Here, we deployed baited remote underwater video surveys (BRUVs) using discarded fish as baits to study the taxonomic richness of consumers, their interactions and consumption dynamic of discards in shallow coastal fishing grounds subject to discarding (Bay of Bourgneuf, North East Atlantic, France). We show that discards attract and are consumed by a wide taxonomic and trophic diversity of species. Interestingly, only one species observed is considered an obligate scavenger, while scavenging is little known or considered anecdotal in most other identified taxa. Analysis of consumption dynamic and interactions around discards revealed intra and interspecific competition among discard consumers as well as successions between consumers involved in predator-prey interactions. Data also suggests that decapods may facilitate discard consumption by non-piscivorous fish by generating scraps during consumption. We argue that underwater video surveys provide a valuable tool to better assess the occurrence and extent of facultative scavenging behaviors within marine communities and understand its role in food web dynamic.

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  • Authors: Alexandre, Carlos M.; Quintella, Bernardo R.; Ovidio, Michaël; Boavida, Isabel; +6 Authors

    Dam construction and streamflow regulation are increasing throughout the world, with impacts in impounded aquatic ecosystems. Hydropower dams, some of them causing a phenomenon called “hydropeaking” during their operation, are known for having a variety of impacts on downstream aquatic biota, particularly fish, and respective habitat. This can result in significant changes, from the community (e.g., fish assemblage structure) to the individual level (e.g., physiological and behavioural adjustments). Researchers and managers involved in the assessment of hydropeaking impacts must be resourceful and use methods that allow their precise evaluation, from large to fine-scale habitat and biological responses. In the last decades, technological advances allowed for the development of techniques and instrumentations that are increasingly being used in hydropeaking impact and mitigation assessments. This paper aims to provide a review, to researchers and managers interested in this field, of some of the most innovative methods and techniques, involving technology, that are available to study hydropeaking effects on downstream ecosystem, particularly from a fish perspective. We discuss the fundamentals behind such techniques, their advantages, and disadvantages, while also providing practical examples of their application and of the type of results that can be obtained. We finish by discussing some of the shortcomings of these methods and how related technology can evolve to solve current limitations.

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  • Authors: Tian, Fang; Xian, Kangwen; Yang, Bin; Duan, Qiufang; +2 Authors

    Regulatory B cells (Bregs) producing IL-10 have negative regulatory function. Several studies have shown the important roles for Toll-like receptor 2 (TLR2), TLR4, and TLR9 ligation in the development of Bregs. We have reported that Schistosome soluble egg antigen (SEA) induced the production of Bregs. However, it remains unclear whether such activation is via the TLR pathway. The present study showed that IL-10 and TLR4 mRNA expression in spleen B cells of significantly increased in C57BL/10 J mice spleen B cells following SEA stimulation. The level of secreted IL-10 and IL-10+ B cell proportion decreased in spleen B cells derived from TLR4-deficient C57BL/10ScNJ (TLR4-/-) mice following SEA or LPS stimulation compared with C57BL/10 J mice. The CD1dhiCD5+ B cells proportion decreased in spleen B cells of TLR4-/- mice following SEA stimulation compared with control mice. NF-κB, ERK, p38MAPK and JNK signal transduction inhibitors significantly suppressed IL-10 secretion in CD1dhiCD5+ B cells induced by SEA or LPS. The phosphorylation levels of IκBα, p65, ERK, JNK and p38 were increased in CD1dhiCD5+ B cell of C57BL/10 J mice treated with LPS or SEA. In conclusion, this study suggests that TLR4 plays a critical role in Bregs activation induced by SEA. And the TLR4-triggered NF-κB and MAPK pathways activation in CD1dhiCD5+ B cells stimulated with SEA. The findings elucidated the mechanism of SEA induction of CD1dhiCD5+ B cells and helped us to understand the immune regulation during Schistosoma japonicum infection.

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    Authors: Sarradin, Pierre-Marie; Matabos, Marjolaine; Gautier, Laurent;

    Momarsat 2022 cruise report: summary of dives and operations, and position of moorings and observation infrastructures and sampling locations

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    Authors: Bärfuss, Konrad; Wickboldt, Heiko; Schlerf, Andreas; Bollmann, Sven; +2 Authors

    The dataset contains meteorological observations during a measurement campaign with the drone LUCA (Lightweight high Ceiling Aerial System). The measurements were collected between the 25th and the 29th October 2021 at rather erratic launch times, as operations from the military training area Todendorf (Panker) in Northern Germany within the restricted airspace belonging to the training area depend on air traffic control clearance. As parameters, pressure, temperature, humidity and wind direction/speed were observed along with time and position of the drone. Besides the raw measurements, temperature and humidity readings have been corrected with an estimated inverse sensor transfer function. The data allows intercomparing the drone measurements with collocated radiosonde launches which enables a discussion on the possible use of the drone LUCA and similar systems for operational meteorology.

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    Authors: Anhaus, Philipp; Katlein, Christian; Matero, Ilkka; Nicolaus, Marcel; +6 Authors

    Water/ice velocity data and instrument status from a Nortek Aquadopp Profiler 2MHz acoustic doppler current profiler (ADCP) attached to a remotely operated vehicle (ROV) during the Multidisciplinary drifting Observatory for the Study of Arctic Climate (MOSAiC) expedition between November 2019 and September 2020. The Aquadopp System Integrator Manual by Nortek AS can be found here: https://sensor.awi.de/rest/sensors/onlineResources/getOnlineResourcesFile/1764/system-integrator-manual_Mar2016.pdf

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1,726 Research products
  • Authors: Eduardo Azevedo-Silva, Claudio; Carolina Pizzochero, Ana; Galvão, Petrus M A; Ometto, Jean P H B; +7 Authors

    Information on pollutant trophodynamics can be crucial for public health, as contaminated food consumption may lead to deleterious effects. This study was performed in Puruzinho Lake, a remote body of water in the Brazilian Amazon from which a riparian human population obtains an important part of its animal protein intake. Samples from 92 individuals, comprising 13 species and four trophic guilds (iliophagous, planktivorous, omnivorous, and piscivorous fish) were analysed for the determination of trace elements (Fe, Cr, Mn, Ni, Zn, Ca, Sr, Cd, Sn, Tl and Pb) and methylmercury concentrations. Samples from the same individuals had already been analysed for stable isotope (SI) measurements (δ13C and δ15N) in a previous investigation and the SI data have been statistically treated with those generated in this study for the evaluation of trophic dynamics of contaminants. Methylmercury was the only analyte that biomagnified, presenting TMF values of 4.65 and 4.55 for total and resident ichthyofauna, respectively. Trace elements presented either trophic dilution or independence from the trophic position, constituting a behaviour that was coherent with that found in the scientific literature. The similarity between Ni behaviour through the trophic web to that of essential elements contributes to the discussion on the essentiality of this metal to fish. Considering the Non-cancer Risk Assessment, the calculated Target Hazard Quotient (THQ) values were higher than 1.0 for all analysed individuals for methylmercury, as well as for only one individual for nickel. No other analyte rendered THQ values higher than 1.0.

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  • Authors: Vogt, Meike; Benedetti, Fabio; Sarmento, Hugo; Huber, Paula; +23 Authors
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    Authors: Pasquale Pagano; Sara Pittonet; Federico Drago; Maria Giuffrida;

    There are several research infrastructures or other data services running in Europe that cover a multitude of marine-related sciences, providing specific datasets coming from observations collected with different methods. These infrastructures constitute a diverse world, each looking at a piece of the big picture, sometimes hindering collaboration and data sharing. Blue-Cloud aims to overcome fragmentation and build a bridge between thematic science clusters - such as marine, climate, food and agriculture sciences - and EOSC, creating a data federation and providing a common access to a so-called thematic EOSC for marine data. By connecting leading marine data management infrastructures with horizontal e-infrastructures, the project aims to maximise the exploitation of data resources available from different sources. The Blue-Cloud framework consists of two major technical components: (1) a Blue-Cloud Data Discovery and Access service, already presented in a previous EOSC in practice story, to serve federated discovery and access to blue data infrastructures, and (2) a Blue-Cloud Virtual Research Environment (VRE) to provide computing platforms and analytical services facilitating the collaboration between researchers, which is detailed hereafter. The Blue-Cloud VRE is powered by the D4Science Infrastructure. [M. Assante et al. (2019) Enacting open science by D4Science. Future Gener. Comput. Syst. 101: 555-563 10.1016/j.future.2019.05.063 ] The full list of EOSC in practice stories is available here

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  • Authors: Roberty, Stéphane; Vega de Luna, Felix; Pierangelini, Mattia; Bomhals, Julie; +3 Authors

    Acclimation of corals to light is known to rely on multiple strategies working at different timescales. Among them, photosynthetic alternative electron flows (AEFs) could act as photoprotective mechanisms under fluctuating light intensities. In this work, we first compared the use of AEFs in shallow and mesophotic colonies of the coral Stylophora pistillata by carrying out joint measurements of oxygen exchange and photosystems quantum yields. We observed similar capacities to re-route photosynthetically derived electrons toward oxygen (Mehler reaction) and to perform cyclic electron flow around photosystem I under high light intensity in both colony types. But in contrast to mesophotic colonies that hosted Cladocopium, the photosynthetic apparatus of Symbiodinium microadriaticum hosted by their shallow counterparts was notably able to drive a higher number of electrons, displayed a higher thermal dissipation of absorbed light energy. Then, a short-term light stress was applied to evaluate the plasticity of the photosynthetic apparatus. Both shallow and mesophotic colonies showed fast acclimation to the low light regime. In contrast, under the high light regime, mesophotic colonies showed a limited capacity to dissipate light energy and were strongly photoinhibited, though their PSI activity was partly preserved and likely involved cyclic electron flow. This study shows how important the photosynthetic alternative electron flows are in acclimation processes to light and how the plasticity of the photosynthetic processes in Symbiodiniaceae may shape the vertical distribution of the coral holobionts.

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  • Authors: Lejeune, Benjamin; Marcout, Anna; Kopp, Dorothée; Morandeau, Fabien; +2 Authors

    Food webs are typically studied with respect to predator-prey interactions while often neglecting to address the role or importance of scavenging (i.e. carrion consumption) on their structure and functioning. In some environmental contexts, scavenging can play a key role in supporting populations and communities as exemplified by seabirds feeding on fisheries discards. Yet, a substantial part of fisheries discards sinks in the ocean where the range of consumers is most likely underestimated, owing to a lack of comprehensive understanding of the scavenging ability of marine fauna and local-scale empirical studies. Here, we deployed baited remote underwater video surveys (BRUVs) using discarded fish as baits to study the taxonomic richness of consumers, their interactions and consumption dynamic of discards in shallow coastal fishing grounds subject to discarding (Bay of Bourgneuf, North East Atlantic, France). We show that discards attract and are consumed by a wide taxonomic and trophic diversity of species. Interestingly, only one species observed is considered an obligate scavenger, while scavenging is little known or considered anecdotal in most other identified taxa. Analysis of consumption dynamic and interactions around discards revealed intra and interspecific competition among discard consumers as well as successions between consumers involved in predator-prey interactions. Data also suggests that decapods may facilitate discard consumption by non-piscivorous fish by generating scraps during consumption. We argue that underwater video surveys provide a valuable tool to better assess the occurrence and extent of facultative scavenging behaviors within marine communities and understand its role in food web dynamic.

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  • Authors: Alexandre, Carlos M.; Quintella, Bernardo R.; Ovidio, Michaël; Boavida, Isabel; +6 Authors

    Dam construction and streamflow regulation are increasing throughout the world, with impacts in impounded aquatic ecosystems. Hydropower dams, some of them causing a phenomenon called “hydropeaking” during their operation, are known for having a variety of impacts on downstream aquatic biota, particularly fish, and respective habitat. This can result in significant changes, from the community (e.g., fish assemblage structure) to the individual level (e.g., physiological and behavioural adjustments). Researchers and managers involved in the assessment of hydropeaking impacts must be resourceful and use methods that allow their precise evaluation, from large to fine-scale habitat and biological responses. In the last decades, technological advances allowed for the development of techniques and instrumentations that are increasingly being used in hydropeaking impact and mitigation assessments. This paper aims to provide a review, to researchers and managers interested in this field, of some of the most innovative methods and techniques, involving technology, that are available to study hydropeaking effects on downstream ecosystem, particularly from a fish perspective. We discuss the fundamentals behind such techniques, their advantages, and disadvantages, while also providing practical examples of their application and of the type of results that can be obtained. We finish by discussing some of the shortcomings of these methods and how related technology can evolve to solve current limitations.

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  • Authors: Tian, Fang; Xian, Kangwen; Yang, Bin; Duan, Qiufang; +2 Authors

    Regulatory B cells (Bregs) producing IL-10 have negative regulatory function. Several studies have shown the important roles for Toll-like receptor 2 (TLR2), TLR4, and TLR9 ligation in the development of Bregs. We have reported that Schistosome soluble egg antigen (SEA) induced the production of Bregs. However, it remains unclear whether such activation is via the TLR pathway. The present study showed that IL-10 and TLR4 mRNA expression in spleen B cells of significantly increased in C57BL/10 J mice spleen B cells following SEA stimulation. The level of secreted IL-10 and IL-10+ B cell proportion decreased in spleen B cells derived from TLR4-deficient C57BL/10ScNJ (TLR4-/-) mice following SEA or LPS stimulation compared with C57BL/10 J mice. The CD1dhiCD5+ B cells proportion decreased in spleen B cells of TLR4-/- mice following SEA stimulation compared with control mice. NF-κB, ERK, p38MAPK and JNK signal transduction inhibitors significantly suppressed IL-10 secretion in CD1dhiCD5+ B cells induced by SEA or LPS. The phosphorylation levels of IκBα, p65, ERK, JNK and p38 were increased in CD1dhiCD5+ B cell of C57BL/10 J mice treated with LPS or SEA. In conclusion, this study suggests that TLR4 plays a critical role in Bregs activation induced by SEA. And the TLR4-triggered NF-κB and MAPK pathways activation in CD1dhiCD5+ B cells stimulated with SEA. The findings elucidated the mechanism of SEA induction of CD1dhiCD5+ B cells and helped us to understand the immune regulation during Schistosoma japonicum infection.

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