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- Other research product . Other ORP type . 2022Closed Access EnglishAuthors:Jurek, J.; Owczarek, M.; Godos, J.; La Vignera, S.; Condorelli, R.A.; Marventano, S.; Tieri, M.; Ghelfi, F.; Titta, L.; Lafranconi, A.; +8 moreJurek, J.; Owczarek, M.; Godos, J.; La Vignera, S.; Condorelli, R.A.; Marventano, S.; Tieri, M.; Ghelfi, F.; Titta, L.; Lafranconi, A.; Gambera, A.; Alonzo, E.; Sciacca, S.; Buscemi, S.; Ray, S.; Del Rio, D.; Galvano, F.; Grosso, G.;Country: Netherlands
Fish represents one of the most important dietary sources of omega-3 polyunsaturated fatty acids, which are known to be associated with various health benefits. This study aimed to systematically review existing meta-analyses of observational studies exploring the association between fish intake and various health outcomes. A systematic search of electronic databases was conducted to retrieve a total of 63 studies. Evidence was deemed as possible for the association between higher fish intake and decreased risk of the acute coronary syndrome, liver cancer, and depression, and limited for other outcomes (including age-related macular degeneration, Alzheimer's disease, heart failure, all-cause and coronary heart disease mortality, total and ischaemic stroke) due to heterogeneity between results and potential otherwise inexplicable confounding factors. In conclusion, results from epidemiological studies support the mechanistic effects associated with omega-3 fatty acids from high fish consumption, but evidence needs to be further corroborated with more reliable results.
- Other research product . Lecture . 2022Open Access EnglishAuthors:Mayer, Igor;Mayer, Igor;Publisher: Tilburg UniversityCountry: Netherlands
- Other research product . Lecture . 2022Open Access EnglishCountry: Netherlands
- Other research product . Other ORP type . 2022Open Access EnglishAuthors:Chalkiadakis, C.; Drakou, E.G.; Kraak, M.J.;Chalkiadakis, C.; Drakou, E.G.; Kraak, M.J.;Country: Netherlands
Understanding and quantifying ES flows is essential for the sustainable management of social-ecological systems, as it directly captures the human-nature interactions within the system and not solely its individual elements. Especially in degrading marine systems, most ES assessments focus solely on either biophysical or socio-economic elements of these social-ecological systems, failing to directly capture the human-nature interactions. This systematic literature review aims to capture the state of the art of ES flow studies to improve the knowledge base on marine ES flows while highlighting knowledge gaps and discussing future research pathways. Within the review we extract information on: i) the ES flow definitions, classification systems, and indicators; ii) the scales of assessment and methods used to assess marine ES flows; and iii) the types of assessment outputs. 82% of the reviewed ES flow assessment methods were spatially explicit. 63% of the studies assess marine ES flows locally. Across-scale ES flows are rarely taken into account. We detect a broad range of conceptualizations within marine ES flow literature. We thus propose an updated definition for ES flows in which they are defined as a spectrum within the social-ecological system, within which different ES flow indicators are placed depending on the relative contributions of biophysical or socio-economic attributes. Based on the extracted information and detected literature gaps, we propose a set of four criteria that should be the minimum required information when referring to ES flows: i) the relative contributions of biophysical and socio-economic attributes present in ES flow indicators; ii) identification of the supplying and receiving systems; iii) the direction and branches of flows; and iv) the spatial and temporal scales across which ES flows occur.
- Other research product . Collection . 2022Open Access EnglishAuthors:Guerreiro, Catarina V; Baumann, Karl-Heinz; Brummer, Geert-Jan A; Valente, André; Fischer, Gerhard; Ziveri, Patrizia; Brotas, Vanda; Stuut, Jan-Berend W;Guerreiro, Catarina V; Baumann, Karl-Heinz; Brummer, Geert-Jan A; Valente, André; Fischer, Gerhard; Ziveri, Patrizia; Brotas, Vanda; Stuut, Jan-Berend W;Publisher: PANGAEAProject: EC | BREMEN TRAC (600411), NWO | TRAFFIC: Transatlantic fl... (9378), EC | DUSTCO (796802), EC | PORTWIMS (810139)
Data refer to export fluxes of carbonate produced by calcifying phytoplankton (coccolithophores), and coccolith-CaCO₃ percent contribution to total carbonate flux across the tropical North Atlantic, from upwelling affected NW Africa, via three ocean sites along 12°N to the Caribbean. Sampling was undertaken by means of a spatial array of four time-series sediment traps (i.e., CB at 21°N 20°W; M1U at 12°N 23°W; M2U at 14°N 37°W; M4U at 12°N 49°W; Guerreiro et al., 2021) collecting particle fluxes in two-week intervals, from October 2012 to February 2014, allowing to track temporal changes along the southern margin of the North Atlantic central gyre. Auxiliary PIC (Particulate Inorganic Carbon) data from NASA's Ocean Biology Processing Group (https://oceancolor.gsfc.nasa.gov) are also provided for the sediment sampling period at all four trap sites. Particle flux data (mg/m²/d) of CaCO₃, organic matter, particulate organic carbon (POC), biogenic silica (bSiO₂) and unspecified residual fraction are provided for sediment trap site CB.
- Other research product . Other ORP type . 2022Open AccessAuthors:van Leeuwen, Stefan; Leenders, Liz; Hoogenboom, Ron; Nijrolder, Antoine;van Leeuwen, Stefan; Leenders, Liz; Hoogenboom, Ron; Nijrolder, Antoine;Publisher: Wageningen University & ResearchCountry: Netherlands
On behalf of the Ministry of Agriculture, Nature and Food Quality (LNV), Wageningen Food Safety Research (WFSR) analyses samples of agricultural products of animal origin for dioxins, PCBs, brominated flame retardants (BFRs) and poly- and perfluorinated alkyl substances (PFASs). This includes meat, milk, eggs and fish. The samples are taken at the primary production or processing stage (e.g. in slaughterhouses or raw milk collection services). For dioxin-like compounds, 350 samples are screened first with the DR CALUX® method. Samples giving a signal indicating a level above the lowest action level are regarded as suspected. These samples are further examined using GC/HRMS as confirmatory method. Concerning fish, shellfish and crustaceans, approx. 25 samples are collected at sea by research vessels, at the fish auction, or from whole-sale traders (farmed fish).
- Other research product . Other ORP type . 2021Open Access EnglishAuthors:Boekhout, Teun; Amend, Anthony S.; El Baidouri, Fouad; Gabaldon, Toni; Geml, Jozsef; Mittelbach, Moritz; Robert, Vincent; Tan, Chen Shuhui; Turchetti, Benedetta; Vu, Duong; +2 moreBoekhout, Teun; Amend, Anthony S.; El Baidouri, Fouad; Gabaldon, Toni; Geml, Jozsef; Mittelbach, Moritz; Robert, Vincent; Tan, Chen Shuhui; Turchetti, Benedetta; Vu, Duong; Wang, Qi-Ming; Yurkov, Andrey;Country: Netherlands
- Other research product . Other ORP type . 2021Open Access EnglishAuthors:Balaji, H.; Demers, I.; Wuerdemann, N.; Schrijnder, J.; Kremer, B.; Klussmann, J.P.; Huebbers, C.U.; Speel, E.J.M.;Balaji, H.; Demers, I.; Wuerdemann, N.; Schrijnder, J.; Kremer, B.; Klussmann, J.P.; Huebbers, C.U.; Speel, E.J.M.;Country: Netherlands
Simple Summary In human papillomavirus (HPV) associated head and neck squamous cell carcinomas (HNSCC) s, the HPV genome is commonly found integrated in the human genome. The event of viral-human genome integration may act as a driver of carcinogenesis. Hence, it is vital to assess the viral integration status of a tumor. In this review, current and emerging techniques for integration detection are thoroughly discussed with their advantages and disadvantages. Additionally, the review also discusses the causes of HPV integration into the cellular genome, as well as its ramifications, impacting possible clinical implications. A constantly increasing incidence in high-risk Human Papillomaviruses (HPV)s driven head and neck squamous cell carcinomas (HNSCC)s, especially of oropharyngeal origin, is being observed. During persistent infections, viral DNA integration into the host genome may occur. Studies are examining if the physical status of the virus (episomal vs. integration) affects carcinogenesis and eventually has further-reaching consequences on disease progression and outcome. Here, we review the literature of the most recent five years focusing on the impact of HPV integration in HNSCCs, covering aspects of detection techniques used (from PCR up to NGS approaches), integration loci identified, and associations with genomic and clinical data. The consequences of HPV integration in the human genome, including the methylation status and deregulation of genes involved in cell signaling pathways, immune evasion, and response to therapy, are also summarized.
- Other research product . Other ORP type . 2021Open Access EnglishAuthors:Vriend, Paul; Hidayat, H.; van Leeuwen, J.; Cordova, M. R.; Purba, N. P.; Löhr, A. J.; Faizal, I.; Ningsih, N. S.; Agustina, K.; Husrin, S.; +6 moreVriend, Paul; Hidayat, H.; van Leeuwen, J.; Cordova, M. R.; Purba, N. P.; Löhr, A. J.; Faizal, I.; Ningsih, N. S.; Agustina, K.; Husrin, S.; Suryono, D. D.; Hantoro, I.; Widianarko, B.; Lestari, P.; Vermeulen, B.; van Emmerik, Tim;Country: Netherlands
- Other research product . Other ORP type . 2021Open AccessAuthors:Pool, Monique; de Boer, Marijke;Pool, Monique; de Boer, Marijke;Publisher: OBIS-SEAMAPCountry: Netherlands
Original provider: Green Heritage Fund of Suriname Dataset credits: Monique Pool, Green Heritage Fund of Suriname Abstract: The Marine Spatial Planning (MSP) project in Suriname was initiated in 2017. Part of this EU-funded project focussed on collecting all the information regarding marine megafauna within the region (Suriname and Guyana). As part of the MSP project we searched for potential marine mammal data holders and different data-sets were found: (1) research data: published and unpublished data collected during dedicated (effort-related) marine fauna surveys (where a GPS track was available); (2) data collected by Marine Fauna Observers during geophysical seismic surveys (without an available GPS track); (3) Opportunistic data collected without keeping track of effort (e.g. website, social media and other sighting records collected by university students or citizens); and (4) Systematic land-based observations carried out during sea turtle surveys on Braamspunt. Here you can find all effort-related data regarding research data collected during boat-based surveys in Suriname. There are two types of boat-based data: (1) Small boat-based surveys by Green Heritage Fund Suriname in order to study the Guiana dolphin (Sotalia guianensis) in the Suriname River; and (2) Dedicated marine megafauna boat-based surveys at-sea carried out by M.N. de Boer and colleagues as part of a PhD study for the University of Wageningen. Purpose: The project aims to significantly enhance the governance and protection of marine and coastal resources of Guyana and Suriname through collaborative processes with all ocean stakeholders, improved knowledge of the coastal and marine environment, enhanced capacity of key stakeholders and informed marine spatial management. Upon completion of the marine Spatial planning project, we aim to continue to add new marine megafauna records to OBIS SEAMAP.
91 Research products, page 1 of 10
Loading
- Other research product . Other ORP type . 2022Closed Access EnglishAuthors:Jurek, J.; Owczarek, M.; Godos, J.; La Vignera, S.; Condorelli, R.A.; Marventano, S.; Tieri, M.; Ghelfi, F.; Titta, L.; Lafranconi, A.; +8 moreJurek, J.; Owczarek, M.; Godos, J.; La Vignera, S.; Condorelli, R.A.; Marventano, S.; Tieri, M.; Ghelfi, F.; Titta, L.; Lafranconi, A.; Gambera, A.; Alonzo, E.; Sciacca, S.; Buscemi, S.; Ray, S.; Del Rio, D.; Galvano, F.; Grosso, G.;Country: Netherlands
Fish represents one of the most important dietary sources of omega-3 polyunsaturated fatty acids, which are known to be associated with various health benefits. This study aimed to systematically review existing meta-analyses of observational studies exploring the association between fish intake and various health outcomes. A systematic search of electronic databases was conducted to retrieve a total of 63 studies. Evidence was deemed as possible for the association between higher fish intake and decreased risk of the acute coronary syndrome, liver cancer, and depression, and limited for other outcomes (including age-related macular degeneration, Alzheimer's disease, heart failure, all-cause and coronary heart disease mortality, total and ischaemic stroke) due to heterogeneity between results and potential otherwise inexplicable confounding factors. In conclusion, results from epidemiological studies support the mechanistic effects associated with omega-3 fatty acids from high fish consumption, but evidence needs to be further corroborated with more reliable results.
- Other research product . Lecture . 2022Open Access EnglishAuthors:Mayer, Igor;Mayer, Igor;Publisher: Tilburg UniversityCountry: Netherlands
- Other research product . Lecture . 2022Open Access EnglishCountry: Netherlands
- Other research product . Other ORP type . 2022Open Access EnglishAuthors:Chalkiadakis, C.; Drakou, E.G.; Kraak, M.J.;Chalkiadakis, C.; Drakou, E.G.; Kraak, M.J.;Country: Netherlands
Understanding and quantifying ES flows is essential for the sustainable management of social-ecological systems, as it directly captures the human-nature interactions within the system and not solely its individual elements. Especially in degrading marine systems, most ES assessments focus solely on either biophysical or socio-economic elements of these social-ecological systems, failing to directly capture the human-nature interactions. This systematic literature review aims to capture the state of the art of ES flow studies to improve the knowledge base on marine ES flows while highlighting knowledge gaps and discussing future research pathways. Within the review we extract information on: i) the ES flow definitions, classification systems, and indicators; ii) the scales of assessment and methods used to assess marine ES flows; and iii) the types of assessment outputs. 82% of the reviewed ES flow assessment methods were spatially explicit. 63% of the studies assess marine ES flows locally. Across-scale ES flows are rarely taken into account. We detect a broad range of conceptualizations within marine ES flow literature. We thus propose an updated definition for ES flows in which they are defined as a spectrum within the social-ecological system, within which different ES flow indicators are placed depending on the relative contributions of biophysical or socio-economic attributes. Based on the extracted information and detected literature gaps, we propose a set of four criteria that should be the minimum required information when referring to ES flows: i) the relative contributions of biophysical and socio-economic attributes present in ES flow indicators; ii) identification of the supplying and receiving systems; iii) the direction and branches of flows; and iv) the spatial and temporal scales across which ES flows occur.
- Other research product . Collection . 2022Open Access EnglishAuthors:Guerreiro, Catarina V; Baumann, Karl-Heinz; Brummer, Geert-Jan A; Valente, André; Fischer, Gerhard; Ziveri, Patrizia; Brotas, Vanda; Stuut, Jan-Berend W;Guerreiro, Catarina V; Baumann, Karl-Heinz; Brummer, Geert-Jan A; Valente, André; Fischer, Gerhard; Ziveri, Patrizia; Brotas, Vanda; Stuut, Jan-Berend W;Publisher: PANGAEAProject: EC | BREMEN TRAC (600411), NWO | TRAFFIC: Transatlantic fl... (9378), EC | DUSTCO (796802), EC | PORTWIMS (810139)
Data refer to export fluxes of carbonate produced by calcifying phytoplankton (coccolithophores), and coccolith-CaCO₃ percent contribution to total carbonate flux across the tropical North Atlantic, from upwelling affected NW Africa, via three ocean sites along 12°N to the Caribbean. Sampling was undertaken by means of a spatial array of four time-series sediment traps (i.e., CB at 21°N 20°W; M1U at 12°N 23°W; M2U at 14°N 37°W; M4U at 12°N 49°W; Guerreiro et al., 2021) collecting particle fluxes in two-week intervals, from October 2012 to February 2014, allowing to track temporal changes along the southern margin of the North Atlantic central gyre. Auxiliary PIC (Particulate Inorganic Carbon) data from NASA's Ocean Biology Processing Group (https://oceancolor.gsfc.nasa.gov) are also provided for the sediment sampling period at all four trap sites. Particle flux data (mg/m²/d) of CaCO₃, organic matter, particulate organic carbon (POC), biogenic silica (bSiO₂) and unspecified residual fraction are provided for sediment trap site CB.
- Other research product . Other ORP type . 2022Open AccessAuthors:van Leeuwen, Stefan; Leenders, Liz; Hoogenboom, Ron; Nijrolder, Antoine;van Leeuwen, Stefan; Leenders, Liz; Hoogenboom, Ron; Nijrolder, Antoine;Publisher: Wageningen University & ResearchCountry: Netherlands
On behalf of the Ministry of Agriculture, Nature and Food Quality (LNV), Wageningen Food Safety Research (WFSR) analyses samples of agricultural products of animal origin for dioxins, PCBs, brominated flame retardants (BFRs) and poly- and perfluorinated alkyl substances (PFASs). This includes meat, milk, eggs and fish. The samples are taken at the primary production or processing stage (e.g. in slaughterhouses or raw milk collection services). For dioxin-like compounds, 350 samples are screened first with the DR CALUX® method. Samples giving a signal indicating a level above the lowest action level are regarded as suspected. These samples are further examined using GC/HRMS as confirmatory method. Concerning fish, shellfish and crustaceans, approx. 25 samples are collected at sea by research vessels, at the fish auction, or from whole-sale traders (farmed fish).
- Other research product . Other ORP type . 2021Open Access EnglishAuthors:Boekhout, Teun; Amend, Anthony S.; El Baidouri, Fouad; Gabaldon, Toni; Geml, Jozsef; Mittelbach, Moritz; Robert, Vincent; Tan, Chen Shuhui; Turchetti, Benedetta; Vu, Duong; +2 moreBoekhout, Teun; Amend, Anthony S.; El Baidouri, Fouad; Gabaldon, Toni; Geml, Jozsef; Mittelbach, Moritz; Robert, Vincent; Tan, Chen Shuhui; Turchetti, Benedetta; Vu, Duong; Wang, Qi-Ming; Yurkov, Andrey;Country: Netherlands
- Other research product . Other ORP type . 2021Open Access EnglishAuthors:Balaji, H.; Demers, I.; Wuerdemann, N.; Schrijnder, J.; Kremer, B.; Klussmann, J.P.; Huebbers, C.U.; Speel, E.J.M.;Balaji, H.; Demers, I.; Wuerdemann, N.; Schrijnder, J.; Kremer, B.; Klussmann, J.P.; Huebbers, C.U.; Speel, E.J.M.;Country: Netherlands
Simple Summary In human papillomavirus (HPV) associated head and neck squamous cell carcinomas (HNSCC) s, the HPV genome is commonly found integrated in the human genome. The event of viral-human genome integration may act as a driver of carcinogenesis. Hence, it is vital to assess the viral integration status of a tumor. In this review, current and emerging techniques for integration detection are thoroughly discussed with their advantages and disadvantages. Additionally, the review also discusses the causes of HPV integration into the cellular genome, as well as its ramifications, impacting possible clinical implications. A constantly increasing incidence in high-risk Human Papillomaviruses (HPV)s driven head and neck squamous cell carcinomas (HNSCC)s, especially of oropharyngeal origin, is being observed. During persistent infections, viral DNA integration into the host genome may occur. Studies are examining if the physical status of the virus (episomal vs. integration) affects carcinogenesis and eventually has further-reaching consequences on disease progression and outcome. Here, we review the literature of the most recent five years focusing on the impact of HPV integration in HNSCCs, covering aspects of detection techniques used (from PCR up to NGS approaches), integration loci identified, and associations with genomic and clinical data. The consequences of HPV integration in the human genome, including the methylation status and deregulation of genes involved in cell signaling pathways, immune evasion, and response to therapy, are also summarized.
- Other research product . Other ORP type . 2021Open Access EnglishAuthors:Vriend, Paul; Hidayat, H.; van Leeuwen, J.; Cordova, M. R.; Purba, N. P.; Löhr, A. J.; Faizal, I.; Ningsih, N. S.; Agustina, K.; Husrin, S.; +6 moreVriend, Paul; Hidayat, H.; van Leeuwen, J.; Cordova, M. R.; Purba, N. P.; Löhr, A. J.; Faizal, I.; Ningsih, N. S.; Agustina, K.; Husrin, S.; Suryono, D. D.; Hantoro, I.; Widianarko, B.; Lestari, P.; Vermeulen, B.; van Emmerik, Tim;Country: Netherlands
- Other research product . Other ORP type . 2021Open AccessAuthors:Pool, Monique; de Boer, Marijke;Pool, Monique; de Boer, Marijke;Publisher: OBIS-SEAMAPCountry: Netherlands
Original provider: Green Heritage Fund of Suriname Dataset credits: Monique Pool, Green Heritage Fund of Suriname Abstract: The Marine Spatial Planning (MSP) project in Suriname was initiated in 2017. Part of this EU-funded project focussed on collecting all the information regarding marine megafauna within the region (Suriname and Guyana). As part of the MSP project we searched for potential marine mammal data holders and different data-sets were found: (1) research data: published and unpublished data collected during dedicated (effort-related) marine fauna surveys (where a GPS track was available); (2) data collected by Marine Fauna Observers during geophysical seismic surveys (without an available GPS track); (3) Opportunistic data collected without keeping track of effort (e.g. website, social media and other sighting records collected by university students or citizens); and (4) Systematic land-based observations carried out during sea turtle surveys on Braamspunt. Here you can find all effort-related data regarding research data collected during boat-based surveys in Suriname. There are two types of boat-based data: (1) Small boat-based surveys by Green Heritage Fund Suriname in order to study the Guiana dolphin (Sotalia guianensis) in the Suriname River; and (2) Dedicated marine megafauna boat-based surveys at-sea carried out by M.N. de Boer and colleagues as part of a PhD study for the University of Wageningen. Purpose: The project aims to significantly enhance the governance and protection of marine and coastal resources of Guyana and Suriname through collaborative processes with all ocean stakeholders, improved knowledge of the coastal and marine environment, enhanced capacity of key stakeholders and informed marine spatial management. Upon completion of the marine Spatial planning project, we aim to continue to add new marine megafauna records to OBIS SEAMAP.