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apps Other research productkeyboard_double_arrow_right Other ORP type 2022 Belgium EnglishCatteau, Audrey; Porcher, Jean-Marc; Bado-Nilles, Anne; Bonnard, Isabelle; Bonnard, Marc; Chaumot, Arnaud; David, Elise; Dedourge-Geffard, Odile; Delahaut, Laurence; Delorme, Nicolas; François, Adeline; Garnero, Laura; Lopes, Christelle; Nott, Katherine; Noury, Patrice; Palluel, Olivier; Palos-Ladeiro, Mélissa; Quéau, Hervé; Ronkart, Sébastien; Sossey Alaoui, Khadija; Turiès, Cyril; Tychon, Bernard; Geffard, Olivier; Geffard,;handle: 2268/266476
A biomonitoring approach based on a single model species cannot be representative of the contaminations impacts on the ecosystem overall. As part of the Interreg DIADeM program (“Development of an integrated approach for the diagnosis of the water quality of the River Meuse”), a study was conducted to establish the proof of concept that the use of a multispecies active biomonitoring approach improves diagnostic of aquatic systems. The complementarity of the biomarker responses was tested in four model species belonging to various ecological compartments: the bryophyte Fontinalis antipyretica, the bivalve Dreissena polymorpha, the amphipod Gammarus fossarum and the fish Gasterosteus aculeatus. The species have been caged upstream and downstream from five wastewater treatment plants (WWTPs) in the Meuse watershed. After the exposure, a battery of biomarkers was measured and results were compiled in an Integrated Biomarker Response (IBR) for each species. A multispecies IBR value was then proposed to assess the quality of the receiving environment upstream the WWTPs. The effluent toxicity was variable according to the caged species and the WWTP. However, the calculated IBR were high for all species and upstream sites, suggesting that the water quality was already downgraded upstream the WWTP. This contamination of the receiving environment was confirmed by the multispecies IBR which has allowed to rank the rivers from the less to the most contaminated. This study has demonstrated the interest of the IBR in the assessment of biological impacts of a point-source contamination (WWTP effluent) but also of the receiving environment, thanks to the use of independent references. Moreover, this study has highlighted the complementarity between the different species and has emphasized the interest of this multispecies approach to consider the variability of the species exposition pathway and sensibility as well as the mechanism of contaminants toxicity in the final diagnosis. DIADEM
Open Repository and ... arrow_drop_down Open Repository and Bibliography - University of LiègeOther ORP type . 2022Data sources: Open Repository and Bibliography - University of Liègeadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
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For further information contact us at helpdesk@openaire.euapps Other research product2022 English EC | ICE2ICE, EC | ACCLIMATEWaelbroeck, Claire; Tjiputra, Jerry; Guo, Chuncheng; Nisancioglu, Kerim H.; Jansen, Eystein; Vazquez Riveiros, Natalia; Toucanne, Samuel; Eynaud, Frédérique; Rossignol, Linda; Dewilde, Fabien; Marchès, Elodie; Lebreiro, Susana; Nave, Silvia;We combine consistently dated benthic carbon isotopic records distributed over the entire Atlantic Ocean with numerical simulations performed by a glacial configuration of the Norwegian Earth System Model with active ocean biogeochemistry, in order to interpret the observed Cibicides δ13C changes at the stadial-interstadial transition corresponding to the end of Heinrich Stadial 4 (HS4) in terms of ocean circulation and remineralization changes. We show that the marked increase in Cibicides δ13C observed at the end of HS4 between ~2000 and 4200 m in the Atlantic can be explained by changes in nutrient concentrations as simulated by the model in response to the halting of freshwater input in the high latitude glacial North Atlantic. Our model results show that this Cibicides δ13C signal is associated with changes in the ratio of southern-sourced (SSW) versus northern-sourced (NSW) water masses at the core sites, whereby SSW is replaced by NSW as a consequence of the resumption of deep water formation in the northern North Atlantic and Nordic Seas after the freshwater input is halted. Our results further suggest that the contribution of ocean circulation changes to this signal increases from ~40 % at 2000 m to ~80 % at 4000 m. Below ~4200 m, the model shows little ocean circulation change but an increase in remineralization across the transition marking the end of HS4. The simulated lower remineralization during stadials than interstadials is particularly pronounced in deep subantarctic sites, in agreement with the decrease in the export production of carbon to the deep Southern Ocean during stadials found in previous studies.
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For further information contact us at helpdesk@openaire.euapps Other research productkeyboard_double_arrow_right Other ORP type 2022 Netherlands EnglishJurek, J.; Owczarek, M.; Godos, J.; La Vignera, S.; Condorelli, R.A.; Marventano, S.; Tieri, M.; Ghelfi, F.; Titta, L.; Lafranconi, A.; Gambera, A.; Alonzo, E.; Sciacca, S.; Buscemi, S.; Ray, S.; Del Rio, D.; Galvano, F.; Grosso, G.;Fish represents one of the most important dietary sources of omega-3 polyunsaturated fatty acids, which are known to be associated with various health benefits. This study aimed to systematically review existing meta-analyses of observational studies exploring the association between fish intake and various health outcomes. A systematic search of electronic databases was conducted to retrieve a total of 63 studies. Evidence was deemed as possible for the association between higher fish intake and decreased risk of the acute coronary syndrome, liver cancer, and depression, and limited for other outcomes (including age-related macular degeneration, Alzheimer's disease, heart failure, all-cause and coronary heart disease mortality, total and ischaemic stroke) due to heterogeneity between results and potential otherwise inexplicable confounding factors. In conclusion, results from epidemiological studies support the mechanistic effects associated with omega-3 fatty acids from high fish consumption, but evidence needs to be further corroborated with more reliable results.
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For further information contact us at helpdesk@openaire.euapps Other research productkeyboard_double_arrow_right Lecture 2022 Netherlands EnglishAll Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=dris___00893::f03874bbd7f1f36b9ada50b7856d41d0&type=result"></script>'); --> </script>
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For further information contact us at helpdesk@openaire.euapps Other research productkeyboard_double_arrow_right Lecture 2022 Netherlands EnglishTilburg University Authors: Mayer, Igor;Mayer, Igor;All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=narcis______::c9fd86cd5850176c317ebb15f560a57b&type=result"></script>'); --> </script>
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For further information contact us at helpdesk@openaire.euapps Other research productkeyboard_double_arrow_right Other ORP type 2022 Netherlands EnglishAuthors: Chalkiadakis, C.; Drakou, E.G.; Kraak, M.J.;Chalkiadakis, C.; Drakou, E.G.; Kraak, M.J.;Understanding and quantifying ES flows is essential for the sustainable management of social-ecological systems, as it directly captures the human-nature interactions within the system and not solely its individual elements. Especially in degrading marine systems, most ES assessments focus solely on either biophysical or socio-economic elements of these social-ecological systems, failing to directly capture the human-nature interactions. This systematic literature review aims to capture the state of the art of ES flow studies to improve the knowledge base on marine ES flows while highlighting knowledge gaps and discussing future research pathways. Within the review we extract information on: i) the ES flow definitions, classification systems, and indicators; ii) the scales of assessment and methods used to assess marine ES flows; and iii) the types of assessment outputs. 82% of the reviewed ES flow assessment methods were spatially explicit. 63% of the studies assess marine ES flows locally. Across-scale ES flows are rarely taken into account. We detect a broad range of conceptualizations within marine ES flow literature. We thus propose an updated definition for ES flows in which they are defined as a spectrum within the social-ecological system, within which different ES flow indicators are placed depending on the relative contributions of biophysical or socio-economic attributes. Based on the extracted information and detected literature gaps, we propose a set of four criteria that should be the minimum required information when referring to ES flows: i) the relative contributions of biophysical and socio-economic attributes present in ES flow indicators; ii) identification of the supplying and receiving systems; iii) the direction and branches of flows; and iv) the spatial and temporal scales across which ES flows occur.
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For further information contact us at helpdesk@openaire.euapps Other research product2022 United States EnglisheScholarship, University of California Authors: Iyer, Ram Balam;Iyer, Ram Balam;Time and energy are finite resources in any environment, and how and when organisms use their available resources to survive and reproduce is the crux of life history theory (Gadgil and Bossert 1970; Balon 1975; Stearns 1976). The different survival strategies used by animals are often shaped by their environment in addition to their biology (Winemiller and Rose 1992), which allows for exploration into biological variability when environmental factors are known. For this reason, the Line Islands in the Central Pacific provide an ideal location to perform observational studies due to their unique productivity gradient and fish assemblage structures across the island chain (Sandin et al. 2008; DeMartini et al. 2008; Fox et al. 2018; Zgliczynski et al. 2019). Many of the world’s coral reefs are in remote regions that lack monitoring programs or even local populations, so conducting ecological surveys on fish communities in these regions can require extensive amounts of time, energy, resources and people. The inherent variability an environment exerts on the many factors that contribute to growth over a lifetime make it difficult to generate a directly proportional formula that calculates age. A novel age estimation method was developed that utilizes in-situ visual census data to estimate the age of fishes, and as a case study, several fish were chosen as representative species to explore its capabilities. Through this process, new ecological information and insight can be gained about the age structures of fish populations both between and throughout the Line Islands.
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For further information contact us at helpdesk@openaire.euapps Other research productkeyboard_double_arrow_right Collection 2022 EnglishPANGAEA NWO | TRAFFIC: Transatlantic fl..., FCT | CEECIND/00752/2018/CP1534/CT0011, EC | PORTWIMSAuthors: Guerreiro, Catarina V; Baumann, Karl-Heinz; Brummer, Geert-Jan A; Valente, André; +4 AuthorsGuerreiro, Catarina V; Baumann, Karl-Heinz; Brummer, Geert-Jan A; Valente, André; Fischer, Gerhard; Ziveri, Patrizia; Brotas, Vanda; Stuut, Jan-Berend W;Data refer to export fluxes of carbonate produced by calcifying phytoplankton (coccolithophores), and coccolith-CaCO₃ percent contribution to total carbonate flux across the tropical North Atlantic, from upwelling affected NW Africa, via three ocean sites along 12°N to the Caribbean. Sampling was undertaken by means of a spatial array of four time-series sediment traps (i.e., CB at 21°N 20°W; M1U at 12°N 23°W; M2U at 14°N 37°W; M4U at 12°N 49°W; Guerreiro et al., 2021) collecting particle fluxes in two-week intervals, from October 2012 to February 2014, allowing to track temporal changes along the southern margin of the North Atlantic central gyre. Auxiliary PIC (Particulate Inorganic Carbon) data from NASA's Ocean Biology Processing Group (https://oceancolor.gsfc.nasa.gov) are also provided for the sediment sampling period at all four trap sites. Particle flux data (mg/m²/d) of CaCO₃, organic matter, particulate organic carbon (POC), biogenic silica (bSiO₂) and unspecified residual fraction are provided for sediment trap site CB.
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For further information contact us at helpdesk@openaire.euapps Other research product2022 United States EnglisheScholarship, University of California Authors: Labare, Michaela Faith;Labare, Michaela Faith;Understanding fish diversity patterns is critical for fisheries management amidst overfishing and climate change. Fish egg surveys have been used to characterize pelagic spawning fish communities, estimate biomass, and track population trends in response to perturbations. Environmental DNA (eDNA) metabarcoding has been implemented to rapidly and non-invasively survey marine ecosystems. To understand the efficacy of eDNA metabarcoding for assessing pelagic spawning fish community composition, concurrent eDNA metabarcoding and fish egg DNA barcoding off Scripps Institution of Oceanography’s Pier (La Jolla, CA) were conducted. Both methods revealed seasonal patterns in agreement with previous fish and fish egg surveys. Species richness was highest in late spring and summer. The presence and spawning of commercially important species and species of conservation concern were detected. Both methods showed overlap for pelagic spawning fishes for broadcast spawners, schooling fish, and locally abundant species. Some actively spawning species were not co-detected with eDNA, likely due to different sampling strategies, taxonomic biases, and abiotic/biotic factors influencing eDNA transport, shedding, and degradation. We identified key advantages and disadvantages of each method. Fish egg barcoding provided information on spawning trends but did not detect taxa with alternate reproduction strategies. Metabarcoding eDNA detected species not found in fish egg sampling, including demersal and viviparous bony fishes, non-spawning adults, Chondrichthyan, and Mammalian species, but missed abundant pelagic fish eggs. This study demonstrates that DNA barcoding of fish eggs and eDNA metabarcoding work best in tandem as each method identified unique fish taxa and provided complementary ecological and biological insight.
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For further information contact us at helpdesk@openaire.euapps Other research product2022 United States EnglisheScholarship, University of California Authors: Cohen, Rebecca Emily;Cohen, Rebecca Emily;The western North Atlantic is a dynamic region characterized by the Gulf Stream western boundary current and inhabited by a diverse host of odontocete, or toothed whale, top predators. Their habitats are highly exploited by commercial fisheries, shipping, marine energy extraction, and naval exercises, subjecting them to a variety of potentially harmful interactions. Many of these species remain poorly understood due to the difficulties of observing them in the pelagic environment. Their habitat utilization and the impacts of anthropogenic activities are not well known. Over the past decade, passive acoustic data has become increasingly utilized for the study of a wide variety of marine animals, and offers several advantages over traditional line-transect visual survey methods. Passive acoustic devices can be deployed at offshore monitoring sites for long periods of time, enabling detection of even rare and cryptic species across seasons and sea states, and without altering animal behaviors. Here we utilized a large passive acoustic data set collected across a latitudinal habitat gradient in the western North Atlantic to address fundamental knowledge gaps in odontocete ecology. I approached the problem of discriminating between species based on spectral and temporal features of echolocation clicks by using machine learning to identify novel click types, and then matching these click types to species using spatiotemporal correlates. I was able to identify novel click types associated with short-beaked common dolphins, Risso’s dolphins, and short-finned pilot whales in this way. Next I characterized temporal patterns in presence and activity for ten different species across our monitoring sites at three different temporal scales: seasonal, lunar, and diel. I observed spatiotemporal separation of apparent competitors, and complex behavioral patterns modulated by interactions between the seasonal, lunar, and diel cycles. Finally I investigated the relationships between species presence and oceanographic covariates to predict habitat suitability across the region, and explored niche partitioning between potentially competitive species. The insights gained here significantly advance our understanding of toothed whale ecology in this region, and can be used for more effective population assessments and management in the face of anthropogenic threats and climate change.
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apps Other research productkeyboard_double_arrow_right Other ORP type 2022 Belgium EnglishCatteau, Audrey; Porcher, Jean-Marc; Bado-Nilles, Anne; Bonnard, Isabelle; Bonnard, Marc; Chaumot, Arnaud; David, Elise; Dedourge-Geffard, Odile; Delahaut, Laurence; Delorme, Nicolas; François, Adeline; Garnero, Laura; Lopes, Christelle; Nott, Katherine; Noury, Patrice; Palluel, Olivier; Palos-Ladeiro, Mélissa; Quéau, Hervé; Ronkart, Sébastien; Sossey Alaoui, Khadija; Turiès, Cyril; Tychon, Bernard; Geffard, Olivier; Geffard,;handle: 2268/266476
A biomonitoring approach based on a single model species cannot be representative of the contaminations impacts on the ecosystem overall. As part of the Interreg DIADeM program (“Development of an integrated approach for the diagnosis of the water quality of the River Meuse”), a study was conducted to establish the proof of concept that the use of a multispecies active biomonitoring approach improves diagnostic of aquatic systems. The complementarity of the biomarker responses was tested in four model species belonging to various ecological compartments: the bryophyte Fontinalis antipyretica, the bivalve Dreissena polymorpha, the amphipod Gammarus fossarum and the fish Gasterosteus aculeatus. The species have been caged upstream and downstream from five wastewater treatment plants (WWTPs) in the Meuse watershed. After the exposure, a battery of biomarkers was measured and results were compiled in an Integrated Biomarker Response (IBR) for each species. A multispecies IBR value was then proposed to assess the quality of the receiving environment upstream the WWTPs. The effluent toxicity was variable according to the caged species and the WWTP. However, the calculated IBR were high for all species and upstream sites, suggesting that the water quality was already downgraded upstream the WWTP. This contamination of the receiving environment was confirmed by the multispecies IBR which has allowed to rank the rivers from the less to the most contaminated. This study has demonstrated the interest of the IBR in the assessment of biological impacts of a point-source contamination (WWTP effluent) but also of the receiving environment, thanks to the use of independent references. Moreover, this study has highlighted the complementarity between the different species and has emphasized the interest of this multispecies approach to consider the variability of the species exposition pathway and sensibility as well as the mechanism of contaminants toxicity in the final diagnosis. DIADEM
Open Repository and ... arrow_drop_down Open Repository and Bibliography - University of LiègeOther ORP type . 2022Data sources: Open Repository and Bibliography - University of Liègeadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
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For further information contact us at helpdesk@openaire.euapps Other research product2022 English EC | ICE2ICE, EC | ACCLIMATEWaelbroeck, Claire; Tjiputra, Jerry; Guo, Chuncheng; Nisancioglu, Kerim H.; Jansen, Eystein; Vazquez Riveiros, Natalia; Toucanne, Samuel; Eynaud, Frédérique; Rossignol, Linda; Dewilde, Fabien; Marchès, Elodie; Lebreiro, Susana; Nave, Silvia;We combine consistently dated benthic carbon isotopic records distributed over the entire Atlantic Ocean with numerical simulations performed by a glacial configuration of the Norwegian Earth System Model with active ocean biogeochemistry, in order to interpret the observed Cibicides δ13C changes at the stadial-interstadial transition corresponding to the end of Heinrich Stadial 4 (HS4) in terms of ocean circulation and remineralization changes. We show that the marked increase in Cibicides δ13C observed at the end of HS4 between ~2000 and 4200 m in the Atlantic can be explained by changes in nutrient concentrations as simulated by the model in response to the halting of freshwater input in the high latitude glacial North Atlantic. Our model results show that this Cibicides δ13C signal is associated with changes in the ratio of southern-sourced (SSW) versus northern-sourced (NSW) water masses at the core sites, whereby SSW is replaced by NSW as a consequence of the resumption of deep water formation in the northern North Atlantic and Nordic Seas after the freshwater input is halted. Our results further suggest that the contribution of ocean circulation changes to this signal increases from ~40 % at 2000 m to ~80 % at 4000 m. Below ~4200 m, the model shows little ocean circulation change but an increase in remineralization across the transition marking the end of HS4. The simulated lower remineralization during stadials than interstadials is particularly pronounced in deep subantarctic sites, in agreement with the decrease in the export production of carbon to the deep Southern Ocean during stadials found in previous studies.
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For further information contact us at helpdesk@openaire.euapps Other research productkeyboard_double_arrow_right Other ORP type 2022 Netherlands EnglishJurek, J.; Owczarek, M.; Godos, J.; La Vignera, S.; Condorelli, R.A.; Marventano, S.; Tieri, M.; Ghelfi, F.; Titta, L.; Lafranconi, A.; Gambera, A.; Alonzo, E.; Sciacca, S.; Buscemi, S.; Ray, S.; Del Rio, D.; Galvano, F.; Grosso, G.;Fish represents one of the most important dietary sources of omega-3 polyunsaturated fatty acids, which are known to be associated with various health benefits. This study aimed to systematically review existing meta-analyses of observational studies exploring the association between fish intake and various health outcomes. A systematic search of electronic databases was conducted to retrieve a total of 63 studies. Evidence was deemed as possible for the association between higher fish intake and decreased risk of the acute coronary syndrome, liver cancer, and depression, and limited for other outcomes (including age-related macular degeneration, Alzheimer's disease, heart failure, all-cause and coronary heart disease mortality, total and ischaemic stroke) due to heterogeneity between results and potential otherwise inexplicable confounding factors. In conclusion, results from epidemiological studies support the mechanistic effects associated with omega-3 fatty acids from high fish consumption, but evidence needs to be further corroborated with more reliable results.
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For further information contact us at helpdesk@openaire.euapps Other research productkeyboard_double_arrow_right Lecture 2022 Netherlands EnglishAll Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=dris___00893::f03874bbd7f1f36b9ada50b7856d41d0&type=result"></script>'); --> </script>
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For further information contact us at helpdesk@openaire.euapps Other research productkeyboard_double_arrow_right Lecture 2022 Netherlands EnglishTilburg University Authors: Mayer, Igor;Mayer, Igor;All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=narcis______::c9fd86cd5850176c317ebb15f560a57b&type=result"></script>'); --> </script>
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For further information contact us at helpdesk@openaire.euapps Other research productkeyboard_double_arrow_right Other ORP type 2022 Netherlands EnglishAuthors: Chalkiadakis, C.; Drakou, E.G.; Kraak, M.J.;Chalkiadakis, C.; Drakou, E.G.; Kraak, M.J.;Understanding and quantifying ES flows is essential for the sustainable management of social-ecological systems, as it directly captures the human-nature interactions within the system and not solely its individual elements. Especially in degrading marine systems, most ES assessments focus solely on either biophysical or socio-economic elements of these social-ecological systems, failing to directly capture the human-nature interactions. This systematic literature review aims to capture the state of the art of ES flow studies to improve the knowledge base on marine ES flows while highlighting knowledge gaps and discussing future research pathways. Within the review we extract information on: i) the ES flow definitions, classification systems, and indicators; ii) the scales of assessment and methods used to assess marine ES flows; and iii) the types of assessment outputs. 82% of the reviewed ES flow assessment methods were spatially explicit. 63% of the studies assess marine ES flows locally. Across-scale ES flows are rarely taken into account. We detect a broad range of conceptualizations within marine ES flow literature. We thus propose an updated definition for ES flows in which they are defined as a spectrum within the social-ecological system, within which different ES flow indicators are placed depending on the relative contributions of biophysical or socio-economic attributes. Based on the extracted information and detected literature gaps, we propose a set of four criteria that should be the minimum required information when referring to ES flows: i) the relative contributions of biophysical and socio-economic attributes present in ES flow indicators; ii) identification of the supplying and receiving systems; iii) the direction and branches of flows; and iv) the spatial and temporal scales across which ES flows occur.
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For further information contact us at helpdesk@openaire.euapps Other research product2022 United States EnglisheScholarship, University of California Authors: Iyer, Ram Balam;Iyer, Ram Balam;Time and energy are finite resources in any environment, and how and when organisms use their available resources to survive and reproduce is the crux of life history theory (Gadgil and Bossert 1970; Balon 1975; Stearns 1976). The different survival strategies used by animals are often shaped by their environment in addition to their biology (Winemiller and Rose 1992), which allows for exploration into biological variability when environmental factors are known. For this reason, the Line Islands in the Central Pacific provide an ideal location to perform observational studies due to their unique productivity gradient and fish assemblage structures across the island chain (Sandin et al. 2008; DeMartini et al. 2008; Fox et al. 2018; Zgliczynski et al. 2019). Many of the world’s coral reefs are in remote regions that lack monitoring programs or even local populations, so conducting ecological surveys on fish communities in these regions can require extensive amounts of time, energy, resources and people. The inherent variability an environment exerts on the many factors that contribute to growth over a lifetime make it difficult to generate a directly proportional formula that calculates age. A novel age estimation method was developed that utilizes in-situ visual census data to estimate the age of fishes, and as a case study, several fish were chosen as representative species to explore its capabilities. Through this process, new ecological information and insight can be gained about the age structures of fish populations both between and throughout the Line Islands.
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For further information contact us at helpdesk@openaire.euapps Other research productkeyboard_double_arrow_right Collection 2022 EnglishPANGAEA NWO | TRAFFIC: Transatlantic fl..., FCT | CEECIND/00752/2018/CP1534/CT0011, EC | PORTWIMSAuthors: Guerreiro, Catarina V; Baumann, Karl-Heinz; Brummer, Geert-Jan A; Valente, André; +4 AuthorsGuerreiro, Catarina V; Baumann, Karl-Heinz; Brummer, Geert-Jan A; Valente, André; Fischer, Gerhard; Ziveri, Patrizia; Brotas, Vanda; Stuut, Jan-Berend W;Data refer to export fluxes of carbonate produced by calcifying phytoplankton (coccolithophores), and coccolith-CaCO₃ percent contribution to total carbonate flux across the tropical North Atlantic, from upwelling affected NW Africa, via three ocean sites along 12°N to the Caribbean. Sampling was undertaken by means of a spatial array of four time-series sediment traps (i.e., CB at 21°N 20°W; M1U at 12°N 23°W; M2U at 14°N 37°W; M4U at 12°N 49°W; Guerreiro et al., 2021) collecting particle fluxes in two-week intervals, from October 2012 to February 2014, allowing to track temporal changes along the southern margin of the North Atlantic central gyre. Auxiliary PIC (Particulate Inorganic Carbon) data from NASA's Ocean Biology Processing Group (https://oceancolor.gsfc.nasa.gov) are also provided for the sediment sampling period at all four trap sites. Particle flux data (mg/m²/d) of CaCO₃, organic matter, particulate organic carbon (POC), biogenic silica (bSiO₂) and unspecified residual fraction are provided for sediment trap site CB.
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For further information contact us at helpdesk@openaire.euapps Other research product2022 United States EnglisheScholarship, University of California Authors: Labare, Michaela Faith;Labare, Michaela Faith;Understanding fish diversity patterns is critical for fisheries management amidst overfishing and climate change. Fish egg surveys have been used to characterize pelagic spawning fish communities, estimate biomass, and track population trends in response to perturbations. Environmental DNA (eDNA) metabarcoding has been implemented to rapidly and non-invasively survey marine ecosystems. To understand the efficacy of eDNA metabarcoding for assessing pelagic spawning fish community composition, concurrent eDNA metabarcoding and fish egg DNA barcoding off Scripps Institution of Oceanography’s Pier (La Jolla, CA) were conducted. Both methods revealed seasonal patterns in agreement with previous fish and fish egg surveys. Species richness was highest in late spring and summer. The presence and spawning of commercially important species and species of conservation concern were detected. Both methods showed overlap for pelagic spawning fishes for broadcast spawners, schooling fish, and locally abundant species. Some actively spawning species were not co-detected with eDNA, likely due to different sampling strategies, taxonomic biases, and abiotic/biotic factors influencing eDNA transport, shedding, and degradation. We identified key advantages and disadvantages of each method. Fish egg barcoding provided information on spawning trends but did not detect taxa with alternate reproduction strategies. Metabarcoding eDNA detected species not found in fish egg sampling, including demersal and viviparous bony fishes, non-spawning adults, Chondrichthyan, and Mammalian species, but missed abundant pelagic fish eggs. This study demonstrates that DNA barcoding of fish eggs and eDNA metabarcoding work best in tandem as each method identified unique fish taxa and provided complementary ecological and biological insight.
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For further information contact us at helpdesk@openaire.euapps Other research product2022 United States EnglisheScholarship, University of California Authors: Cohen, Rebecca Emily;Cohen, Rebecca Emily;The western North Atlantic is a dynamic region characterized by the Gulf Stream western boundary current and inhabited by a diverse host of odontocete, or toothed whale, top predators. Their habitats are highly exploited by commercial fisheries, shipping, marine energy extraction, and naval exercises, subjecting them to a variety of potentially harmful interactions. Many of these species remain poorly understood due to the difficulties of observing them in the pelagic environment. Their habitat utilization and the impacts of anthropogenic activities are not well known. Over the past decade, passive acoustic data has become increasingly utilized for the study of a wide variety of marine animals, and offers several advantages over traditional line-transect visual survey methods. Passive acoustic devices can be deployed at offshore monitoring sites for long periods of time, enabling detection of even rare and cryptic species across seasons and sea states, and without altering animal behaviors. Here we utilized a large passive acoustic data set collected across a latitudinal habitat gradient in the western North Atlantic to address fundamental knowledge gaps in odontocete ecology. I approached the problem of discriminating between species based on spectral and temporal features of echolocation clicks by using machine learning to identify novel click types, and then matching these click types to species using spatiotemporal correlates. I was able to identify novel click types associated with short-beaked common dolphins, Risso’s dolphins, and short-finned pilot whales in this way. Next I characterized temporal patterns in presence and activity for ten different species across our monitoring sites at three different temporal scales: seasonal, lunar, and diel. I observed spatiotemporal separation of apparent competitors, and complex behavioral patterns modulated by interactions between the seasonal, lunar, and diel cycles. Finally I investigated the relationships between species presence and oceanographic covariates to predict habitat suitability across the region, and explored niche partitioning between potentially competitive species. The insights gained here significantly advance our understanding of toothed whale ecology in this region, and can be used for more effective population assessments and management in the face of anthropogenic threats and climate change.
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