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576 Research products

  • European Marine Science
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  • 2019-2023
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Groh, Sebastian; Upchurch, Paul; Day, Julia J; Barrett, Paul M;

    Extant neosuchian crocodiles are represented by only 24 taxa that are confined to the tropics and subtropics. However, at other intervals during their 200 million-year evolutionary history, the clade reached considerably higher levels of species-richness, matched by more widespread distributions. Neosuchians have occupied numerous habitats and niches, ranging from dwarf riverine forms to large marine predators. Despite numerous previous studies, several unsolved questions remain with respect to their biogeographic history, including the geographic origins of major groups, e.g., Eusuchia and Neosuchia itself. We carried out the most comprehensive biogeographic analysis of Neosuchia to date, based on a multivariate K-means clustering approach followed by the application of two ancestral area estimation methods (BioGeoBEARS and Bayesian Ancestral Location Estimation) applied to two recently published phylogenies. Our results placed the origin of Neosuchia in north-western Pangaea, with subsequent radiations into Gondwana. Eusuchia probably emerged in the European archipelago during the Late Jurassic/Early Cretaceous, followed by dispersal to the North American and Asian landmasses. We show that putative transoceanic dispersal events are statistically significantly less likely to happen in alligatoroids. This finding is consistent with the saltwater intolerant physiology of extant alligatoroids, bolstering inferences of such intolerance in their ancestral lineages.

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    Authors: Fritzsch, Bernadette;

    Software has played an increasingly important role in science over the years. However, software development has long led to a shadowy existence. However, as programs have become more complex and they have often been passed on as a legacy from one development team (often made up of temporary Ph.D. students) Research software as a foundation of scientific work has been increasingly pushed to the fore. In the meantime, job titles such as “research software engineer” have become established in various places. This talk examines the importance of research software in various contexts and how this affects developers of research software.

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  • Authors: Eduardo Azevedo-Silva, Claudio; Carolina Pizzochero, Ana; Galvão, Petrus M A; Ometto, Jean P H B; +7 Authors

    Information on pollutant trophodynamics can be crucial for public health, as contaminated food consumption may lead to deleterious effects. This study was performed in Puruzinho Lake, a remote body of water in the Brazilian Amazon from which a riparian human population obtains an important part of its animal protein intake. Samples from 92 individuals, comprising 13 species and four trophic guilds (iliophagous, planktivorous, omnivorous, and piscivorous fish) were analysed for the determination of trace elements (Fe, Cr, Mn, Ni, Zn, Ca, Sr, Cd, Sn, Tl and Pb) and methylmercury concentrations. Samples from the same individuals had already been analysed for stable isotope (SI) measurements (δ13C and δ15N) in a previous investigation and the SI data have been statistically treated with those generated in this study for the evaluation of trophic dynamics of contaminants. Methylmercury was the only analyte that biomagnified, presenting TMF values of 4.65 and 4.55 for total and resident ichthyofauna, respectively. Trace elements presented either trophic dilution or independence from the trophic position, constituting a behaviour that was coherent with that found in the scientific literature. The similarity between Ni behaviour through the trophic web to that of essential elements contributes to the discussion on the essentiality of this metal to fish. Considering the Non-cancer Risk Assessment, the calculated Target Hazard Quotient (THQ) values were higher than 1.0 for all analysed individuals for methylmercury, as well as for only one individual for nickel. No other analyte rendered THQ values higher than 1.0.

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    Authors: Susana Carvalho; Hailey Shchepanik; Eva Aylagas; Michael L Berumen; +17 Authors

    Managing marine nonindigenous species (mNIS) is challenging, because marine environments are highly connected, allowing the dispersal of species across large spatial scales, including geopolitical borders. Cross-border inconsistencies in biosecurity management can promote the spread of mNIS across geopolitical borders, and incursions often go unnoticed or unreported. Collaborative surveillance programs can enhance the early detection of mNIS, when response may still be possible, and can foster capacity building around a common threat. Regional or international databases curated for mNIS can inform local monitoring programs and can foster real-time information exchange on mNIS of concern. When combined, local species reference libraries, publicly available mNIS databases, and predictive modeling can facilitate the development of biosecurity programs in regions lacking baseline data. Biosecurity programs should be practical, feasible, cost-effective, mainly focused on prevention and early detection, and be built on the collaboration and coordination of government, nongovernment organizations, stakeholders, and local citizens for a rapid response.

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    Authors: Kruger, Avery; Shankar, Vaishaal; Davies, Jonathan;

    When communities are assembled through processes such as filtering or limiting similarity acting on phylogenetically conserved traits, the evolutionary signature of those traits may be reflected in patterns of community membership. We show how the model of trait evolution underlying community-structuring traits can be inferred from community membership data using both a variation of a traditional eco-phylogenetic metric--the mean pairwise distance (MPD) between taxa--and a recent machine learning tool, Convolutional Kitchen Sinks (CKS). Both methods perform well across a range of phylogenetically informative evolutionary models, but CKS outperforms MPD as tree size increases. We demonstrate CKS by inferring the evolutionary history of freeze tolerance in angiosperms. Our analysis is consistent with a late burst model of freeze tolerance, suggesting it evolved recently. We suggest that data ordered on phylogenies such as trait values, species interactions, or community presence/absence are good candidates for CKS modeling because the generative models produce structured differences between neighboring points that CKS is well-suited for. We introduce the R package kitchen to perform CKS for generic application of the technique.

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  • Authors: Burkard, Annika;

    This thesis analyzes the flight across the sea in the context of the refugee crisis in 2015/ 2016 in German film and literature. The works chosen are Wolfgang Fischer’s film Styx from 2018, Reinhard Kleist’s graphic novel Der Traum von Olympia (An Olympic Dream) from 2015, and Merle Kröger’s crime novel Havarie (Collision) from 2015. Common motives in the works are the depiction of Europe as a paradise from the refugee’s perspective and the contrast between vacationing and bare survival. However, each author/director based their unique narrative method not only on the medium and genre of delivery but also on choices of narrative perspective. This thesis examines the differences in the narrative methods and gives special attention to the emotional, cognitive, ethical, and political steerings of the recipients. In all works, the steering of the recipients is linked to political topics such as the concepts of agency, solidarity, human rights, and precarity. Furthermore, this thesis examines the depiction of Europe, its responsibilities, and the traces of colonialism as projected in film and literature. At the end of the thesis, I reflect on the representation of the sea, which becomes a political place, a dangerous border region or a resort for vacation in the works.

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    Authors: Orth, Donald J.;

    These supplementary teaching resources align to the open textbook, Fish, Fishing, and Conservation which is a 389-page, peer-reviewed publicly-available, openly-licensed textbook intended for undergraduate students who are exploring majors in Fish & Wildlife. It is also relevant to a general audience or for use in courses which explore social and ethical aspects of fish, fishing and conservation. The open textbook, Fish, Fishing, and Conservation, is freely available at https://doi.org/10.21061/fishandconservation Supplementary teaching resources include a sample course syllabus, schedule, and a variety of assignments. Individuals who wish to share their materials relevant to teaching in this subject area are encouraged to join and share their openly-licensed resources via the Fish, Fishing, and Conservation Instructor Group in OERCommons Are you reviewing or adopting Fish, Fishing, and Conservation for a course? Please help us understand your use by completing this form https://bit.ly/fishandconservation_interest VIVA (Virtual Library of Virginia)

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    Authors: Govindarajan, Annette; Llopiz, Joel; Caiger, Paul; Jech, Michael; +4 Authors

    Mesopelagic fishes are a crucial component of the world's oceans in terms of their abundance, biomass, and ecosystem function. These fishes are important contributors to the biological carbon pump via their feeding and behaviors, whereby they facilitate the transfer of carbon from shallow waters to the deep sea. Several species undertake diel vertical migration, feeding in shallower waters at night and moving to deeper waters during the day. This process actively expedites the downward flux of carbon. However, carbon budgets and climate models require accurate information regarding the depth distributions and migration patterns of these fishes, and environmental DNA (eDNA) analyses can provide this information. Here, we utilize eDNA approaches, generating taxonomically-informative COI and 12S reference barcodes for 80 species of mesopelagic fishes, which can be used to for species-level identification of eDNA sequences. Using these, along with a publicly available barcode database, we compare results from eDNA analysis with traditional net sampling and explore the ability of eDNA techniques to detect diel vertical migration in fishes from samples collected in Northwest Atlantic Slope Water. We found that eDNA and net samples often resulted in different species identifications, demonstrating that eDNA can detect species that would otherwise be missed with traditional methods. In our eDNA samples, we also detected more species (12) in our shallowest depth category (0–100 m) from nighttime samples than from daytime samples (3). This is consistent with increased diversity in shallow waters at night due to diel vertical migration. Based on the variability observed in sample duplicates, we suggest that future mesopelagic eDNA studies incorporate larger sample volumes and scaled-up sampling efforts. We also note the potential for eDNA analysis to address ecological questions such as predator-prey relationships and identification of foraging hotspots, yielding insights into carbon flow through the ocean's midwaters.

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    Authors: Dransch, Doris; Rath, Willi;

    The Workshop is part of a yearly series within the AI/ML-Cluster in Subtopic 2.4 of the research program PoF IV: Changing Earth - Sustaining our Future.

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  • Authors: Vogt, Meike; Benedetti, Fabio; Sarmento, Hugo; Huber, Paula; +23 Authors
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    Authors: Groh, Sebastian; Upchurch, Paul; Day, Julia J; Barrett, Paul M;

    Extant neosuchian crocodiles are represented by only 24 taxa that are confined to the tropics and subtropics. However, at other intervals during their 200 million-year evolutionary history, the clade reached considerably higher levels of species-richness, matched by more widespread distributions. Neosuchians have occupied numerous habitats and niches, ranging from dwarf riverine forms to large marine predators. Despite numerous previous studies, several unsolved questions remain with respect to their biogeographic history, including the geographic origins of major groups, e.g., Eusuchia and Neosuchia itself. We carried out the most comprehensive biogeographic analysis of Neosuchia to date, based on a multivariate K-means clustering approach followed by the application of two ancestral area estimation methods (BioGeoBEARS and Bayesian Ancestral Location Estimation) applied to two recently published phylogenies. Our results placed the origin of Neosuchia in north-western Pangaea, with subsequent radiations into Gondwana. Eusuchia probably emerged in the European archipelago during the Late Jurassic/Early Cretaceous, followed by dispersal to the North American and Asian landmasses. We show that putative transoceanic dispersal events are statistically significantly less likely to happen in alligatoroids. This finding is consistent with the saltwater intolerant physiology of extant alligatoroids, bolstering inferences of such intolerance in their ancestral lineages.

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    Authors: Fritzsch, Bernadette;

    Software has played an increasingly important role in science over the years. However, software development has long led to a shadowy existence. However, as programs have become more complex and they have often been passed on as a legacy from one development team (often made up of temporary Ph.D. students) Research software as a foundation of scientific work has been increasingly pushed to the fore. In the meantime, job titles such as “research software engineer” have become established in various places. This talk examines the importance of research software in various contexts and how this affects developers of research software.

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  • Authors: Eduardo Azevedo-Silva, Claudio; Carolina Pizzochero, Ana; Galvão, Petrus M A; Ometto, Jean P H B; +7 Authors

    Information on pollutant trophodynamics can be crucial for public health, as contaminated food consumption may lead to deleterious effects. This study was performed in Puruzinho Lake, a remote body of water in the Brazilian Amazon from which a riparian human population obtains an important part of its animal protein intake. Samples from 92 individuals, comprising 13 species and four trophic guilds (iliophagous, planktivorous, omnivorous, and piscivorous fish) were analysed for the determination of trace elements (Fe, Cr, Mn, Ni, Zn, Ca, Sr, Cd, Sn, Tl and Pb) and methylmercury concentrations. Samples from the same individuals had already been analysed for stable isotope (SI) measurements (δ13C and δ15N) in a previous investigation and the SI data have been statistically treated with those generated in this study for the evaluation of trophic dynamics of contaminants. Methylmercury was the only analyte that biomagnified, presenting TMF values of 4.65 and 4.55 for total and resident ichthyofauna, respectively. Trace elements presented either trophic dilution or independence from the trophic position, constituting a behaviour that was coherent with that found in the scientific literature. The similarity between Ni behaviour through the trophic web to that of essential elements contributes to the discussion on the essentiality of this metal to fish. Considering the Non-cancer Risk Assessment, the calculated Target Hazard Quotient (THQ) values were higher than 1.0 for all analysed individuals for methylmercury, as well as for only one individual for nickel. No other analyte rendered THQ values higher than 1.0.

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    Authors: Susana Carvalho; Hailey Shchepanik; Eva Aylagas; Michael L Berumen; +17 Authors

    Managing marine nonindigenous species (mNIS) is challenging, because marine environments are highly connected, allowing the dispersal of species across large spatial scales, including geopolitical borders. Cross-border inconsistencies in biosecurity management can promote the spread of mNIS across geopolitical borders, and incursions often go unnoticed or unreported. Collaborative surveillance programs can enhance the early detection of mNIS, when response may still be possible, and can foster capacity building around a common threat. Regional or international databases curated for mNIS can inform local monitoring programs and can foster real-time information exchange on mNIS of concern. When combined, local species reference libraries, publicly available mNIS databases, and predictive modeling can facilitate the development of biosecurity programs in regions lacking baseline data. Biosecurity programs should be practical, feasible, cost-effective, mainly focused on prevention and early detection, and be built on the collaboration and coordination of government, nongovernment organizations, stakeholders, and local citizens for a rapid response.

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    Authors: Kruger, Avery; Shankar, Vaishaal; Davies, Jonathan;

    When communities are assembled through processes such as filtering or limiting similarity acting on phylogenetically conserved traits, the evolutionary signature of those traits may be reflected in patterns of community membership. We show how the model of trait evolution underlying community-structuring traits can be inferred from community membership data using both a variation of a traditional eco-phylogenetic metric--the mean pairwise distance (MPD) between taxa--and a recent machine learning tool, Convolutional Kitchen Sinks (CKS). Both methods perform well across a range of phylogenetically informative evolutionary models, but CKS outperforms MPD as tree size increases. We demonstrate CKS by inferring the evolutionary history of freeze tolerance in angiosperms. Our analysis is consistent with a late burst model of freeze tolerance, suggesting it evolved recently. We suggest that data ordered on phylogenies such as trait values, species interactions, or community presence/absence are good candidates for CKS modeling because the generative models produce structured differences between neighboring points that CKS is well-suited for. We introduce the R package kitchen to perform CKS for generic application of the technique.

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  • Authors: Burkard, Annika;

    This thesis analyzes the flight across the sea in the context of the refugee crisis in 2015/ 2016 in German film and literature. The works chosen are Wolfgang Fischer’s film Styx from 2018, Reinhard Kleist’s graphic novel Der Traum von Olympia (An Olympic Dream) from 2015, and Merle Kröger’s crime novel Havarie (Collision) from 2015. Common motives in the works are the depiction of Europe as a paradise from the refugee’s perspective and the contrast between vacationing and bare survival. However, each author/director based their unique narrative method not only on the medium and genre of delivery but also on choices of narrative perspective. This thesis examines the differences in the narrative methods and gives special attention to the emotional, cognitive, ethical, and political steerings of the recipients. In all works, the steering of the recipients is linked to political topics such as the concepts of agency, solidarity, human rights, and precarity. Furthermore, this thesis examines the depiction of Europe, its responsibilities, and the traces of colonialism as projected in film and literature. At the end of the thesis, I reflect on the representation of the sea, which becomes a political place, a dangerous border region or a resort for vacation in the works.

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    Authors: Orth, Donald J.;

    These supplementary teaching resources align to the open textbook, Fish, Fishing, and Conservation which is a 389-page, peer-reviewed publicly-available, openly-licensed textbook intended for undergraduate students who are exploring majors in Fish & Wildlife. It is also relevant to a general audience or for use in courses which explore social and ethical aspects of fish, fishing and conservation. The open textbook, Fish, Fishing, and Conservation, is freely available at https://doi.org/10.21061/fishandconservation Supplementary teaching resources include a sample course syllabus, schedule, and a variety of assignments. Individuals who wish to share their materials relevant to teaching in this subject area are encouraged to join and share their openly-licensed resources via the Fish, Fishing, and Conservation Instructor Group in OERCommons Are you reviewing or adopting Fish, Fishing, and Conservation for a course? Please help us understand your use by completing this form https://bit.ly/fishandconservation_interest VIVA (Virtual Library of Virginia)

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