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The present study provides new knowledge about the so far largely unexplored Coral Patch seamount which is located in the NE Atlantic Ocean half-way between the Iberian Peninsula and Madeira. For the first time a detailed hydroacoustic mapping (MBES) in conjunction with video surveys (ROV, camera sled) were performed to describe the sedimentological and biological characteristics of this sub-elliptical ENE-WSW elongated seamount. Video observations were restricted to the southwestern summit area of Coral Patch seamount (water depth: 560–760 m) and revealed that this part of the summit is dominated by exposed hard substrate, whereas soft sediment is just a minor substrate component. Although exposed hardgrounds are dominant for this summit area and, thus, offer suitable habitat for settlement by benthic organisms, the benthic megafauna shows rather scarce occurrence. In particular, scleractinian framework-building cold-water corals are apparently rare with very few isolated and small-sized live occurrences of the species Lophelia pertusa and Madrepora oculata. In contrast, dead coral framework and coral rubble are more frequent pointing to a higher abundance of cold-water corals on Coral Patch during the recent past. This is even supported by the observation of fishing lines that got entangled with rather fresh-looking coral frameworks. Overall, long lines and various species of commercially important fish were frequently observed emphasising the potential of Coral Patch as an important target for fisheries that may have impacted the entire benthic community. Hydroacoustic seabed classification covered the entire summit of Coral Patch and its northern and southern flanks (water depth: 560–2660 m) and revealed extended areas dominated by mixed and soft sediments at the northern flank and to a minor degree at its easternmost summit and southern flank. Nevertheless, these data also predict most of the summit area to be dominated by exposed bedrock which would offer suitable habitat for benthic organisms. By comparing the locally restricted video observations and the broad-scale monitoring of a much larger and deeper seafloor area as derived by hydroacoustic seabed classification, it becomes obvious that habitat information obtained by in situ sampling may provide a rather scattered pattern about the entire seamount ecosystem. Solely with a combination of both methods, a satisfactory approach to describe the diverse characteristics of a seamount ecosystem can be derived which is in turn indispensable for future scientific monitoring campaigns as well as management and conservation purposes.

Submarine canyons have often been identified as hotspots of secondary production with the potential to house distinct faunal assemblages and idiosyncratic ecosystems. Within these deep-sea habitats, assemblages of scavenging fauna play a vital role in reintroducing organic matter from large food falls into the wider deep-sea food chain. Free-fall baited traps were set at different depths within three submarine canyons on the Iberian Margin. Amphipods from the traps were identified to species level and counted. Scavenging amphipod assemblages were compared at different depths within each canyon and between individual canyon systems. Using data from literature, abyssal plain assemblages were compared to submarine canyon assemblages. Samples from canyons were found to contain common abyssal plain species but in greater than expected abundances. It is proposed that this is a result of the high organic carbon input into canyon systems owing to their interception of sediment from the continental shelf and input from associated estuarine systems. Community composition differed significantly between the submarine canyons and abyssal plains. The cause of this difference cannot be attributed to one environmental variable due to the numerous inherent differences between canyons and abyssal plains.

Interest in seamount research has gathered momentum over the past five years in an effort to understand the physical, geochemical and biological characteristics as well as the interconnectedness of seamount ecosystems. The majority of biological seamount research has concentrated upon the rich and diverse suspension feeding organisms that dominate the megafauna, such as gorgonians and antipatharian corals; by comparison there have been few studies that have investigated the no less enigmatic, but possibly just as important infauna. To help fill this knowledge gap, the macrofaunal community was sampled from a total of five stations along a northerly transect (capturing water depths from ∼130 m to ∼3300 m), on Senghor Seamount (NE Atlantic). The focus of this study is on the polychaete communities. Polychaete abundance peaked at the summit and a mid-slope station (∼1500 m), a pattern mirrored by the biomass values. The polychaete community along the transect appeared to be particularly diverse, with 135 species nominally identified to putative species from a total of 954 individuals. A diversity maximum was identified on the upper slope at ∼800 m depth, with species diversity, richness and evenness also all peaking at this station. Depth is likely to be a significant factor in determining levels of similarity between stations.

Benthic foraminifera are an important component of the marine biota, but protocols for investigating their viability and metabolism are still extremely limited. Classical studies on benthic foraminifera have been based on direct counting under light microscopy. Typically, these organisms are stained with Rose Bengal, which binds proteins and other macromolecules, but does not allow discrimination between viable and recently dead organisms. The fluorescent in situ hybridization technique (FISH) represents a new and useful approach to identify living cells possessing an active metabolism. Our work is the first test of the suitability of the FISH technique, based on fluorescent probes targeting the 18S rRNA, to detect live benthic foraminifera. The protocol was applied on Ammonia group and Miliolids, as well as on agglutinated polythalamous (i.e., Leptohalysis scottii and Eggerella scabra) and soft-shelled monothalamous (i.e., Psammophaga sp. and saccamminid morphotypes) taxa. The results from FISH analyses were compared with those obtained, on the same specimens assayed with FISH, from microscopic analysis of the cytoplasm colour, presence of pigments and pseudopodial activity. Our results indicate that FISH targets only metabolically active foraminifera, and allows discerning from low to high cellular activity, validating the hypothesis that the intensity of the fluorescent signal emitted by the probe is dependent upon the physiological status of cells. These findings support the usefulness of this molecular approach as a key tool for obtaining information on the physiology of living foraminifera, both in field and experimental settings.

Submarine canyons are sites of intense energy and material exchange between the shelf and the deep adjacent basins. To test the hypothesis that active submarine canyons represent preferential conduits of available food for the deep-sea benthos, two mooring lines were deployed at 1200 m depth from November 2008 to November 2009 inside the Blanes canyon and on the adjacent open slope (Catalan Margin, NW Mediterranean Sea). We investigated the fluxes, biochemical composition and food quality of sinking organic carbon (OC). OC fluxes in the canyon and the open slope varied among sampling periods, though not consistently in the two sites. In particular, while in the open slope the highest OC fluxes were observed in August 2009, in the canyon the highest OC fluxes occurred in April–May 2009. For almost the entire study period, the OC fluxes in the canyon were significantly higher than those in the open slope, whereas OC contents of sinking particles collected in the open slope were consistently higher than those in the canyon. This result confirms that submarine canyons are effective conveyors of OC to the deep sea. Particles transferred to the deep sea floor through the canyons are predominantly of inorganic origin, significantly higher than that reaching the open slope at a similar water depth. Using multivariate statistical tests, two major clusters of sampling periods were identified: one in the canyon that grouped trap samples collected in December 2008, concurrently with the occurrence of a major storm at the sea surface, and associated with increased fluxes of nutritionally available particles from the upper shelf. Another cluster grouped samples from both the canyon and the open slope collected in March 2009, concurrently with the occurrence of the seasonal phytoplankton bloom at the sea surface, and associated with increased fluxes of total phytopigments. Our results confirm the key ecological role of submarine canyons for the functioning of deep-sea ecosystems, and highlight the importance of canyons in linking episodic storms and primary production occurring at the sea surface to the deep sea floor.

The geo-biological exploration of a pockmark field located at ca. 800 m below sea level in the Gela basin (Strait of Sicily, Central Mediterranean) provided a relatively diverse chemosymbiotic community and methane-imprinted carbonates. To date, this is the first occurrence of such a type of specialised deep-water cold-seep communities recorded from this key region, before documented in the Mediterranean as rather disjunct findings in its eastern and westernmost basins. The thiotrophic chemosymbiotic organisms recovered from this area include empty tubes of the vestimentiferan Lamellibrachia sp., loose and articulated shells of lucinids (Lucinoma kazani, Myrtea amorpha), vesicomyids (Isorropodon perplexum), and gastropods (Taranis moerchii). A callianassid decapod (Calliax sp.) was consistently found alive in large numbers in the pockmark mud. Their post-mortem calcified parts mixed with molluscs and subordinately miliolid foraminifers form a distinct type of skeletal assemblage. Carbonate concretions display δ13C values as low as −40‰ PDB suggesting the occurrence of light hydrocarbons in the seeping fluids. Since none of the truly chemosymbiotic organisms was found alive, although their skeletal parts appear at times very fresh, some specimens have been AMS-14C dated to shed light on the historical evolution of this site. Lamellibrachiav and Lucinoma are two of the most significant chemosymbiotic taxa reported from various Mediterranean cold seep sites (Alboran Sea and Eastern basin). Specimens from station MEDCOR78 (pockmark #1, Lat. 36°46´10.18" N, Long. 14°01´31.59" E, 815 m below sea level) provided ages of 11736 ± 636 yr cal BP (Lamellibrachia sp.), and 9609.5 ± 153.5 yr cal BP (L. kazani). One shell of M. amorpha in core MEDCOR81 (pockmark #6, Lat 36°45´38.89" N, Long 14°00´07.58" E, 822 m below sea level) provided a sub-modern age of 484 ± 54 yr cal BP. These ages document that fluid seepage at this pockmark site has been episodically sustaining thiotrophic macrobenthic communities since the end of the Younger Dryas stadial up to sub-recent times.

Spatial distribution and patchiness of deep sea macrofaunal communities were studied from samples collected in the Rockall Trough, NE Atlantic. In June 2011, two areas, located outside and within the Darwin Mound Special Area of Conservation (SAC), were sampled. Three megacores were deployed in each area at approximately 900 m depth. The two areas, ~ 18 km apart, did not differ in terms of sediment organic matter and percentage of mud content, but small significant differences were found in sediment median grain size and depth. Macrofaunal communities were found to differ significantly, with the difference mostly driven by changes in the abundance of polychaetes, crustaceans and nematodes whilst no significant differences were seen for the other phyla. Whereas overall macrofaunal abundance was higher outside the SAC compared to within, this pattern varies considerably between phyla. Diversity indices showed no significant differences between protected and unprotected sites. Deep-water trawling regularly take place outside the Darwin Mounds SAC whilst the area inside the SAC has been closed to bottom trawling since 2004, and the above distribution patterns are discussed in the context of both environmental and anthropogenic causes.

Alongside a primary productivity gradient between the Galicia Bank region in the Northeast Atlantic and the more oligotrophic eastern Mediterranean Basin, we investigated the bathymetric (1200–3000 m) and longitudinal variation in several measures for nematode taxon (Shannon–Wiener genus diversity, expected genus richness and generic evenness) and functional diversity (trophic diversity, diversity of life history strategies, biomass diversity and phylogenetic diversity). Our goals were to establish the form of the relation between diversity and productivity (measured as seafloor particulate organic carbon or POC flux), and to verify the positive and negative effect of sediment particle size diversity (SED) and the seasonality in POC flux (SVI), respectively, on diversity, as observed for other oceanographic regions and taxa. In addition, we hypothesised that higher taxon diversity is associated with higher functional diversity, which in turn stimulates nematode carbon mineralisation rates (determined from biomass-dependent respiration estimates). Taxon diversity related positively to seafloor POC flux. Phylogenetic diversity (measured as average taxonomic distinctness) was affected negatively by the magnitude and variability in POC flux, and positively by SED. The latter also showed an inverse relation with trophic diversity. Accounting for differences in total biomass between samples, we observed a positive linear relation between taxon diversity and carbon mineralisation in nematode communities. We could, however, not identify the potential mechanism through which taxon diversity may promote this ecosystem function since none of the functional diversity indices related to both diversity and nematode respiration. The present results suggest potential effects of climate change on deep-sea ecosystem functioning, but further also emphasise the need for a better understanding of nematode functions and their response to evolutionary processes.

Cap de Creus Canyon (CCC) is known as a preferential conduit for particulate matter leaving the Gulf of Lion continental shelf towards the slope and the basin, particularly in winter when storms and dense shelf water cascading coalesce to enhance the seaward export of shelf waters. During the CASCADE (CAscading, Storm, Convection, Advection and Downwelling Events) cruise in March 2011, deployments of recording instruments within the canyon and vertical profiling of the water column properties were conducted to study with high spatial-temporal resolution the impact of such processes on particulate matter fluxes. In the context of the mild and wet 2010–2011 winter, no remarkable dense shelf water formation was observed. On the other hand, the experimental setup allowed for the study of the impact of E-SE storms on the hydrographical structure and the particulate matter fluxes in the CCC. The most remarkable feature in terms of sediment transport was a period of dominant E-SE winds from 12 to 16 March, including two moderate storms (maximum significant wave heights = 4.1–4.6 m). During this period, a plume of freshened, relatively cold and turbid water flowed at high speeds along the southern flank of the CCC in an approximate depth range of 150–350 m. The density of this water mass was lighter than the ambient water in the canyon, indicating that it did not cascade off-shelf and that it merely downwelled into the canyon forced by the strong cyclonic circulation induced over the shelf during the storms and by the subsequent accumulation of seawater along the coast. Suspended sediment load in this turbid intrusion recorded along the southern canyon flank oscillated between 10 and 50 mg L−1, and maximum currents speeds reached values up to 90 cm s−1. A rough estimation of 105 tons of sediment was transported through the canyon along its southern wall during a 3-day-long period of storm-induced downwelling. Following the veering of the wind direction (from SE to NW) on 16 March, downwelling ceased, currents inside the canyon reversed from down- to up-canyon, and the turbid shelf plume was evacuated from the canyon, most probably flowing along the southern canyon flank and being entrained by the general SW circulation after leaving the canyon confinement. This study highlights that remarkable sediment transport occurs in the CCC, and particularly along its southern flank, even during mild and wet winters, in absence of cascading and under limited external forcing. The sediment transport associated with eastern storms like the ones described in this paper tends to enter the canyon by its downstream flank, partially affecting the canyon head region. Sediment transport during these events is not constrained near the seafloor but distributed in a depth range of 200–300 m above the bottom. Our paper broadens the understanding of the complex set of atmosphere-driven sediment transport processes acting in this highly dynamic area of the northwestern Mediterranean Sea.

With knowledge of typical hydrodynamic behavior of waste plastic material, models predicting the dispersal of benthic plastics from land sources within the ocean are possible. Here we investigated the hydrodynamic behavior (density, settling velocity and resuspension characteristics) of non-buoyant preproduction plastic pellets in the laboratory. From these results we used the MOHID modelling system to predict what would be the likely transport and deposition pathways of such material in the Nazaré Canyon (Portugal) during the spring/summer months of 2009 and the autumn/winter months of 2011. Model outputs indicated that non-buoyant plastic pellets would likely be transported up and down canyon as a function of tidal forces, with only a minor net down canyon movement resulting from tidal action. The model indicated that transport down canyon was likely greater during the autumn/winter, primarily as a result of occasional mass transport events related to storm activity and internal wave action. Transport rates within the canyon were not predicted to be regular throughout the canyon system, with stretches of the upper canyon acting more as locations of pellet deposition than conduits of pellet transport. Topography and the depths of internal wave action are hypothesized to contribute to this lack of homogeneity in predicted transport.