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An operational data assimilation system for the Eastern Mediterranean is described and evaluated for a 6-month twin experiment. In the assimilative run, glider profiles of temperature and salinity are assimilated daily into a high resolution ocean forecast, after an initial spin up of one week. In the control run, the same initial and boundary conditions are used to produce an operational forecast, but without assimilation of in situ data. While both runs were similar for most of the time and most of the domain, significant differences were found near the region of assimilation, particularly when the glider passed through the anticyclonic Cyprus eddy. Root mean square differences of the misfits between the temperature and salinity observations and the model background field at those locations (before any assimilation) were approximately 15% lower in the assimilative run. Improvements in the forecasting capability of surface currents were found, and would provide a significant improvement of predictive capacity for applications such as pollutant spreading or offshore operational safety.

Two consecutive summer upwelling events, each lasting for less than 24 h, were surveyed in high temporal and vertical resolution close to the Boknis Eck time-series station (BE) in the western Belt Sea (Baltic Sea) in summer 2010 with an autonomous glider. Driven only by moderate offshore winds both events resulted in more than 5 K cooling of surface waters, while only for the second event were significant irreversible changes in the vertical stratification observed. Generalizing the glider survey observations with hourly wind data from nearby meteorological stations, it is found that upwelling in the BE area occurs for wind directions between 190 to 260° and wind speed exceeding 4 m s−1. Based on these thresholds the wind-induced summer (June to September) upwelling conditions in the BE area for the period 1982 to 2012 are reconstructed. On average about 18 days of upwelling favourable wind conditions are found for the four summer months, with significant interannual variability ranging from 7.7 days (2006) to more than 28 days (1985). By aligning upwelling favourable wind conditions with the monthly BE surveys it is found that extreme anomalies in BE surveys follow extended periods of upwelling favourable winds.

In stratified shelf seas, oxygen depletion beneath the thermocline is a result of a greater rate of biological oxygen demand than the rate of supply of oxygenated water. Suitably equipped gliders are uniquely placed to observe both the supply through the thermocline and the consumption of oxygen in the bottom layers. A Seaglider was deployed in the shallow (≈ 100 m) stratified North Sea in a region of known low oxygen during August 2011 to investigate the processes regulating supply and consumption of dissolved oxygen below the pycnocline. The first deployment of such a device in this area, it provided extremely high-resolution observations, 316 profiles (every 16 min, vertical resolution of 1 m) of conductivity, temperature, and depth (CTD), dissolved oxygen concentrations, backscatter, and fluorescence during a 3-day deployment.The high temporal resolution observations revealed occasional small-scale events (< 200 m or 6 h) that supply oxygenated water to the bottom layer at a rate of 2 ± 1 µmol dm−3 day−1. Benthic and pelagic oxygen sinks, quantified through glider observations and past studies, indicate more gradual background consumption rates of 2.5 ± 1 µmol dm−3 day−1. This budget revealed that the balance of oxygen supply and demand is in agreement with previous studies of the North Sea. However, the glider data show a net oxygen consumption rate of 2.8 ± 0.3 µmol dm−3 day−1, indicating a localized or short-lived (< 200 m or 6 h) increase in oxygen consumption rates. This high rate of oxygen consumption is indicative of an unidentified oxygen sink. We propose that this elevated oxygen consumption is linked to localized depocentres and rapid remineralization of resuspended organic matter.The glider proved to be an excellent tool for monitoring shelf sea processes despite challenges to glider flight posed by high tidal velocities, shallow bathymetry, and very strong density gradients. The direct observation of these processes allows more up to date rates to be used in the development of ecosystem models.

Here we present first observations, from instrumentation installed on moorings and a float, of unexpectedly low (−1) oxygen environments in the open waters of the tropical North Atlantic, a region where oxygen concentration does normally not fall much below 40 μmol kg−1. The low-oxygen zones are created at shallow depth, just below the mixed layer, in the euphotic zone of cyclonic eddies and anticyclonic-modewater eddies. Both types of eddies are prone to high surface productivity. Net respiration rates for the eddies are found to be 3 to 5 times higher when compared with surrounding waters. Oxygen is lowest in the centre of the eddies, in a depth range where the swirl velocity, defining the transition between eddy and surroundings, has its maximum. It is assumed that the strong velocity at the outer rim of the eddies hampers the transport of properties across the eddies boundary and as such isolates their cores. This is supported by a remarkably stable hydrographic structure of the eddies core over periods of several months. The eddies propagate westward, at about 4 to 5 km day−1, from their generation region off the West African coast into the open ocean. High productivity and accompanying respiration, paired with sluggish exchange across the eddy boundary, create the "dead zone" inside the eddies, so far only reported for coastal areas or lakes. We observe a direct impact of the open ocean dead zones on the marine ecosystem as such that the diurnal vertical migration of zooplankton is suppressed inside the eddies.