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We report the results of an aquaria-based experiment testing the effects of suspended particles generated during potential mining activities, on a common habitat-building coral species in the Azores, Dentomuricea aff. meteor. Corals were collected from the summit of Condor Seamount (Azores, NE Atlantic) at depths between 185-210 m in August 2014. Coral fragments were maintained in 10-L aquaria and exposed to three experimental treatments for a period of four weeks at the DeepSeaLab aquaria facilities (Okeanos-University of the Azores): (1) control conditions (no added sediments); (2) suspended polymetallic sulphide (PMS) particles; (3) suspended quartz particles. PMS particles were obtained by grinding PMS inactive chimney rocks collected at the hydrothermal vent field Lucky Strike. Both particle types were delivered at a concentration of 25 mg L-1. The putative effects of PMS particles were evaluated through measurements of the coral physiological responses at the levels of the organism (oxygen consumption, ammonium excretion), tissue (bioaccumulation of metals) and cell (enzyme activity and gene expression).

Files needed for Quality Control checks of the SISALworkbook_v12 (Comas-Bru and Harrison, 2019). This includes a Python script (wb_check_v12_compatible.py) for automatic checks and an R script (plot_agemodels_hiatus_v12) for manual checks. Instructions on how to run these scripts are provided in a README_instructions.txt file. See supplementary material of Comas-Bru et al (2020, https://doi.org/10.5194/essd-2020-39) for further information on the checks.

Future deep-sea mining for polymetallic nodules in abyssal plains will negatively impact the benthic ecosystem, but it is largely unclear whether this ecosystem will be able to recover from mining disturbance and if so, to what extent and at what timescale. During the “DISturbance and reCOLonization” (DISCOL) experiment, a total of 22 % of the seafloor within a 10.8 km2 circular area of the nodule-rich seafloor in the Peru Basin (SE Pacific) was ploughed in 1989 to bury nodules and mix the surface sediment. This area was revisited 0.1, 0.5, 3, 7, and 26 years after the disturbance to assess macrofauna, invertebrate megafauna and fish density and diversity. We used this unique abyssal faunal time series to develop carbon-based food web models for each point in the time series using the linear inverse modeling approach for sediments subjected to two disturbance levels: (1) outside the plough tracks; not directly disturbed by plough, but probably suffered from additional sedimentation; and (2) inside the plough tracks. Total faunal carbon stock was always higher outside plough tracks compared with inside plough tracks. After 26 years, the carbon stock inside the plough tracks was 54 % of the carbon stock outside plough tracks. Deposit feeders were least affected by the disturbance, with modeled respiration, external predation, and excretion rates being reduced by only 2.6 % inside plough tracks compared with outside plough tracks after 26 years. In contrast, the respiration rate of filter and suspension feeders was 79.5 % lower in the plough tracks after 26 years. The “total system throughput” (T..), i.e., the total sum of modeled carbon flows in the food web, was higher throughout the time series outside plough tracks compared with the corresponding inside plough tracks area and was lowest inside plough tracks directly after the disturbance (8.63 × 10−3 ± 1.58 × 10−5 mmol C m−2 d−1). Even 26 years after the DISCOL disturbance, the discrepancy of T.. between outside and inside plough tracks was still 56 %. Hence, C cycling within the faunal compartments of an abyssal plain ecosystem remains reduced 26 years after physical disturbance, and a longer period is required for the system to recover from such a small-scale sediment disturbance experiment.

Rapid changes in ocean circulation and climate have been observed in marine-sediment and ice cores over the last glacial period and deglaciation, highlighting the non-linear character of the climate system and underlining the possibility of rapid climate shifts in response to anthropogenic greenhouse gas forcing. To date, these rapid changes in climate and ocean circulation are still not fully explained. One obstacle hindering progress in our understanding of the interactions between past ocean circulation and climate changes is the difficulty of accurately dating marine cores. Here, we present a set of 92 marine sediment cores from the Atlantic Ocean for which we have established age-depth models that are consistent with the Greenland GICC05 ice core chronology, and computed the associated dating uncertainties, using a new deposition modeling technique. This is the first set of consistently dated marine sediment cores enabling paleoclimate scientists to evaluate leads/lags between circulation and climate changes over vast regions of the Atlantic Ocean. Moreover, this data set is of direct use in paleoclimate modeling studies.

This work aims at characterising the seamount physiography and biology in the OSPAR Convention limits (north-east Atlantic Ocean) and Mediterranean Sea. We first inferred potential abundance, location and morphological characteristics of seamounts, and secondly, summarized the existing biological, geological and oceanographic in situ research, identifying examples of well-studied seamounts. Our study showed that the seamount population in the OSPAR area (north-east Atlantic) and in the Mediterranean Sea is large with around 557 and 101 seamount-like features, respectively. Similarly, seamounts occupy large areas of about 616 000 km2 in the OSPAR region and of about 89 500 km2 in the Mediterranean Sea. The presence of seamounts in the north-east Atlantic has been known since the late 19th century, but overall knowledge regarding seamount ecology and geology is still relatively poor. Only 37 seamounts in the OSPAR area (3.5% of all seamounts in the region), 22 in the Mediterranean Sea (9.2% of all seamounts in the region) and 25 in the north-east Atlantic south of the OSPAR area have in situ information. Seamounts mapped in both areas are in general very heterogeneous, showing diverse geophysical characteristics. These differences will likely affect the biological diversity and production of resident and associated organisms.

This paper presents an analysis of the distributions of nonlinear crests, troughs and heights of deep water waves from mixed following sea states generated mechanically in an offshore basin and compares with previous results for mixed crossing seas from the same experiment. The random signals at the wavemaker in both types of mixed seas are characterized by bimodal spectra following the model of Guedes Soares (1984). In agreement with the Benjamin–Feir mechanism, the high-frequency spectrum shows a decrease in the peak magnitude and downshift of the peak with the distance, as well as reduction of the tail. The observed statistics and probabilistic distributions exhibit, in general, increasing effects of third-order nonlinearity with the distance from the wavemaker. However, this effect is less pronounced in the wave systems with two following wave trains than in the crossing seas, given that they have identical initial characteristics of the bimodal spectra. The relevance of third-order effects due to free modes only is demonstrated and assessed by excluding the vertically asymmetric distortions induced by bound wave effects of second and third order. The fact that for records characterized by relatively large coefficient of kurtosis, the empirical distributions for the non-skewed profiles continue deviating from the linear predictions, corroborate the relevance of free wave interactions and thus the need of using higher-order models for the description of wave data.

The deep-sea hydrothermal vent mussel Bathymodiolus azoricus is a symbiont bearing bivalve that is found in great abundance at the Menez Gwen and Lucky Strike vent sites and in close vicinity off the Azores region near the Mid-Atlantic Ridge (MAR). The distinct relationships that vent mussels have developed with their physical and chemical environments are likely reflected in global gene expression profiles providing thus a means to distinguish geographically distinct vent mussels on the basis of gene expression studies, fluorescence in situ hybridization (FISH) experiments and 16S rRNA amplicon sequencing, to assess the natural expression of bacterial genes and vent mussel immune genes and the constitutive distribution and relative abundance of endosymbiotic bacteria within gill tissues. Our results confirmed the presence of methanotroph-related endosymbionts in Menez Gwen vent mussels whereas Lucky Strike specimens seem to harbor a different bacterial morphotype when a methane monooxygenase gene specific probe was used. No qualitative differences could be visualized between Menez Gwen and Lucky Strike individuals when tested with sulfur-oxidizing-related nucleic-acid probe. Quantitative PCR (qPCR) studies revealed varied gene expression profiles in both Menez Gwen and Lucky Strike mussel gill tissues for the immune genes selected. Genes encoding transcription factors presented noticeably low levels of fold expression whether in MG or LS animals whereas the genes encoding effector molecules appeared to have higher levels expression in MG gill tissues. The peptidoglycan recognition molecule, encoding gene, PGRP presented the highest level of transcriptional activity among the genes analyzed in MG gill tissues, seconded by carcinolectin and thus denoting the relevance of immune recognition molecules in early stage of the immune responses onset. Genes regarded as encoding molecules involved in signaling pathways were consistently expressed in both MG and LS gill tissues. Remarkably, the immunity-related GTPase encoding gene demonstrated in LS samples, the highest level of expression among the signaling molecule encoding genes tested when expressions levels were compared between MG and LG animals. A differential expression analysis of bacterial genes between MG and LS indicated a clear expression signature in LS gill tissues. The bacterial community structure ensued from the 16S rRNA sequencing analyses pointed at a unpredicted conservation of endosymbiont bacterial loads between MG and LS samples. Taken together, our results support the premise that Bathymodiolus azoricus exhibits different transcriptional statuses depending on which hydrothermal vent site it is collected from and within the same collection site while exhibiting differential levels of expression of genes corresponding to different immune functional categories. The present study represents a first attempt to characterize gene expression signatures in hydrothermal vent animals issued from distinct deep-sea environmental sites based on immune and bacterial genes expressions.

In this study, Algal Pigment Index 2 (API2) is investigated in Sagres, an area located in the Atlantic off the southwestern Iberian Peninsula. Standard results provided by the MEdium Resolution Image Spectrometer (MERIS) ocean colour sensor were compared with alternative data products, determined through a regional inversion scheme, using both MERIS and in situ remote sensing reflectances (Rrs) as input data. The reference quantity for performance assessment is in situ total chlorophyll a (TChl a) concentration estimated through a phytoplankton absorption coefficient (i.e. equivalent to API2). Additional comparison of data products has also been addressed for TChl a concentration determined by high-performance liquid chromatography. The MERIS matchup analysis revealed a systematic underestimation of TChl a, which was confirmed with an independent comparison of product map analysis. The study demonstrates the importance of regional algorithms for the study area that could complement upcoming standard results of the current Sentinel-3/OLCI space mission.

The sediment records from north and south of Denmark Strait (cores PS2644 and MD99-2323) and on the Kangerlussuaq Trough Mouth Fan (KTMF) (MD99-2260) are evaluated for the period 12 to 60 cal ka BP with the goal of evaluating: 1) the relative roles of the Greenland and Iceland Ice Sheets in sediment composition, 2) the processes of sediment supply, and 3) the relationship, if any, between the atmospheric derived ice core records and glacial marine sediment history. These questions were addressed using counts of coarse (> 2 mm) ice rafted debris (IRD), magnetic susceptibility, grain-size spectra, and sediment mineral composition. A significant difference in these variables occurred between MS3 and MIS2, with the latter showing small to modest abrupt changes in felsic and mafic minerals and in IRD, compared to larger and less variable changes during MIS2. The dominant bedrock source archived in the cores is the Cenozoic basaltic outcrops from East Greenland and Iceland (~60%) but there are frequent pulses of felsic-rich sediments (~17-36%), which coincided with Greenland stadials. There is also a persistent detrital carbonate input. The largest shift in most sediment proxies occurred ~28-30 cal ka BP reflecting the sustained expansion of the ice sheets. The grain-size spectra on the Snorri Drift (MD99-2323) reflected complex depositional histories involving the supply of poorly sorted glacially derived sediment (sand, silt, and clay) and reworking by bottom currents.

Arctic freshwater discharges to the Labrador Sea from melting glaciers and sea-ice can have a deep impact on ocean circulation dynamics in the North Atlantic, modifying climate and deep water formation in this region. In this study, we present for the first time a high resolution record of ice-rafting in the Labrador Sea over the last millennium to assess the effects of freshwater discharges in this region on ocean circulation and climate. The occurrence of ice-rafted debris (IRD) in the Labrador Sea was studied using sediments from Site GS06-144-03 (57.29° N, 48.37° W, 3432 m water depth). IRD from the fraction 63-150 µm shows particularly high concentrations during the intervals: ~1000-1100, ~ 1150-1250, ~1400-1450, ~1650-1700 and ~1750-1800 yr AD. The first two intervals occurred during the Medieval Climate Anomaly (MCA), whereas the others took place within the Little Ice Age (LIA). Mineralogical identification indicates that the main IRD source during the MCA was SE Greenland. In contrast, the concentration and relative abundance of hematite-stained grains reflects an increase in the contribution of Arctic ice during the LIA. The comparison of our Labrador Sea IRD records with other climate proxies from the subpolar North Atlantic allowed us to propose a sequence of processes that led to the cooling that occurred during the LIA, particularly in the Northern Hemisphere. This study reveals that the warm climate of the MCA may have enhanced iceberg calving along the SE Greenland coast and, as a result, freshened the subpolar gyre (SPG). Consequently, SPG circulation switched to a weaker mode and reduced convection in the Labrador Sea, decreasing its contribution to the North Atlantic deep water formation and, thus, reducing the amount of heat transported to high latitudes. This situation of weak SPG circulation may have made the North Atlantic climate more unstable, inducing a state in which external forcings (e.g. reduced solar irradiance and volcanic eruptions) could easily drive periods of severe cold conditions in Europe and the North Atlantic like the LIA. This analysis indicates that a freshening of the SPG may play a crucial role in the development of cold events during the Holocene, which may be of key importance for predictions about future climate.