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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Aumont, Olivier; Rodgers, Keith;

    The repository contains the version of PISCES that was used to investigate the role played by low latitudes and the Southern Ocean at sustaining export production and PP in the low latitudes. This code is based on version 3.6 of NEMO and the repository only includes routines that have been changed with respect to this version. The code is in Fortran 90.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Bald, Carlos; Domínguez, Haizea; Iñarra, Bruno;

    Aquaculture has grown exponentially during the last decades, even overcoming traditional fishing in volume since2012 (Iñarra et al, 2018). The rise of the production of fish involves the rise of fish by-products, that in case ofbeing disposed could suppose an environmental risk. Fish viscera are part of the by-products used to producefishmeal and are the 10-18 % of the whole fish weight.Fish silage or acid autolysis is commonly used in areas with high fisheries rates and consists of liquefactionand stabilization of minced fish at room temperature, normally adding formic acid until reaching a pH between3.5 and 4.5 to prevent microbial growth. Hydrolysis of proteins occurs thanks to the endogenous acid proteasesthat are located at the fish viscera, which enable to get low molecular weight peptides and amino acids (Toppe etal, 2018). The resulting protein hydrolysates could be used as fertilisers. However, silage can take several days toachieve a high hydrolysis degree. In this work, autolysis has been carried out simulating the conditions ofenzymatic hydrolysis but only working with the endogenous enzymes from fish viscera with the aim ofaccelerating a typical silage to get free amino acids while saving costs derived from the use of commercialenzymes

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    Other ORP type . 2024
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Pérez-Martínez, Carmen; Ramos-Rodríguez, Eloísa; Conde-Porcuna, José M; Moreno, Emilio; +2 Authors

    This dataset presents relative abundance data of subfossil cladoceran remains obtained from sediment cores retrieved from six lakes at Sierra Nevada Mountains (Granada, Spain) during 2008 and 2011. The files show data over the past 180 years approximately. Sediment cores were taken from the deepest part of the lake by a slide-hammer gravity corer (Aquatic Research Instruments, USA), with a 6.9 cm inner diameter during the summer of 2011, except for Río Seco Lake core which was sampled in 2008. The cores were sectioned on-site into 0.25 cm thick layers for the upper sections of the cores and into 0.5 cm intervals for the remainder of the cores, except for Río Seco Lake core which was sectioned at 0.5 cm contiguous intervals for the entire core length. Sediment cores were dated using gamma spectrometry (DSPec, Ortec®) techniques by measuring activities of radioisotopes (210Pb, 214Bi and 137Cs) and sediment ages were estimated from unsupported 210Pb activities using the constant rate of supply (CRS) model. Cladoceran samples were processed by heating them in 10% KOH and sieved through a 38 µm mesh. The samples were mounted onto microscope slides using glycerol gelatin dyed with safranin. A minimum of 200 remains were identified and enumerated from each sediment interval under a light microscope at 200x magnification.

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    Authors: Guillerm, Emmanuel; Gardien, Véronique; Waldmann, Nicolas D; Brall, Niels S; +5 Authors

    The rain regime in the Eastern Mediterranean is primarily controlled by Mediterranean winter cyclonic systems. The lake level of the Dead Sea responds sensitively to hydrological changes, and can be used to track the evolution of the Mediterranean hydroclimate during the late Quaternary. However, lake level reconstructions beyond 70 ka are limited by a lack of paleoshorelines and dating methodologies. Here, we reconstruct the Dead Sea lake level back to 237 ka using measurements of brine density from halite fluid inclusions of the deep ICDP core 5017-1-A. We combine our mass balance-based reconstruction with an age reevaluation of published sequence stratigraphy-based lake levels, by tying their chronology to the ICDP core. The lake levels obtained with the two different methods compare very well, within better than 10 m. Combined with a compilation of published paleoshorelines for the last 70 ka, our reconstruction covers three glacial-interglacial cycles.

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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Trouche, Blandine;

    Anvi'o databases of the 47 ammonia-oxidizing archaea MAGs from abyssal and hadal surface sediments presented in Trouche et al, 2023 (https://doi.org/10.1038/s43705-023-00341-6). 

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
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    ZENODO
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    Authors: Daniel Moreno-Parada; Alexander Robinson; Marisa Montoya; Jorge Alvarez-Solas;

    We present the ice-sheet model Nix, an open-source project intended for collaborative development. Nix is a 2D thermomechanical model written in C/C++ that simultaneously solves for the momentum balance equations, mass conservation and temperature evolution.

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    ZENODO
    Model . 2023
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      Model . 2023
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    Authors: Martínez Moreno, Josué;

    This dataset includes the NEMO 4.0.2 configuration used and analysed in the paper titled "Eddy-driven heterogeneity in sea ice during the ice-growth season". The output data is approximately 4TB for the 3 idealised configuration used in the manuscript, thus we opted to distribute the configuration. Note: The initial conditions for each simulation are compressed into the file `init_cond.zip` The configuration for one of the simulations is compressed in the file `config.zip` In order to reproduce all the runs, it's only required to change the initial conditions in the file namelist_cfg and namelist_ice_cfg. Further information and scripts to reproduce the result of the manuscript can be found at: https://github.com/josuemtzmo/Ice_formation

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    Model . 2023
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    Authors: Dromant Bellver, Beatriz;

    This document summarizes the key aspects of the EU Commission's strategy to harness the potential of offshore renewable energy.

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    Authors: Bouchet, Marie; Landais, Amaëlle; Grisart, Antoine; Parrenin, Frédéric; +15 Authors

    We present the new reference chronology (AICC2023) providing an age vs depth relationship covering the last 800 kyr (thousands of years) for five ice cores (EDC, EDML, NGRIP, TALDICE and Vostok). To construct the new AICC2023 chronology, we used new highly resolved measurements for EDC ice core as well as novel absolute 81Kr ages, stratigraphic links between the five ice cores and accurate firn modeling estimates. The new chronological and glaciological information were combined in the Bayesian dating tool Paleochrono to obtain the AICC2023 timescale.

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    Authors: Orejas, Covadonga; Antón-Sempere, Silvia; Terrón-Singler, Alexis; Grau, Amalia;

    This bundled publication contains data sets on 1) Polyp size and sex: biometric data of polyps from Dendrophyllia ramea, as well as the sex of each analysed polyp; 2) Oocyte per mesentery: number of oocytes per analysed mesentery; 3) Oocytes per polyp: these data have been used to calculate fecundity; 4) Oocyte developmental stages: oocyte sizes and developmental stage are included; 5. Spermatic cysts: spermatic cysts sizes and developmental stage are included. A total of three polyps per each coral colony have been analysed by histological methods and a total of three coral colonies have been analysed for each sampling month: February 2018, May 2017, July 2018 and October 2017. Samples have been collected in the protected area of Punta La Mona (Granada, Alborán Sea, western Mediterranean) between 30 and 37 meters depth by scuba diving.

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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Aumont, Olivier; Rodgers, Keith;

    The repository contains the version of PISCES that was used to investigate the role played by low latitudes and the Southern Ocean at sustaining export production and PP in the low latitudes. This code is based on version 3.6 of NEMO and the repository only includes routines that have been changed with respect to this version. The code is in Fortran 90.

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    Authors: Bald, Carlos; Domínguez, Haizea; Iñarra, Bruno;

    Aquaculture has grown exponentially during the last decades, even overcoming traditional fishing in volume since2012 (Iñarra et al, 2018). The rise of the production of fish involves the rise of fish by-products, that in case ofbeing disposed could suppose an environmental risk. Fish viscera are part of the by-products used to producefishmeal and are the 10-18 % of the whole fish weight.Fish silage or acid autolysis is commonly used in areas with high fisheries rates and consists of liquefactionand stabilization of minced fish at room temperature, normally adding formic acid until reaching a pH between3.5 and 4.5 to prevent microbial growth. Hydrolysis of proteins occurs thanks to the endogenous acid proteasesthat are located at the fish viscera, which enable to get low molecular weight peptides and amino acids (Toppe etal, 2018). The resulting protein hydrolysates could be used as fertilisers. However, silage can take several days toachieve a high hydrolysis degree. In this work, autolysis has been carried out simulating the conditions ofenzymatic hydrolysis but only working with the endogenous enzymes from fish viscera with the aim ofaccelerating a typical silage to get free amino acids while saving costs derived from the use of commercialenzymes

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    Authors: Pérez-Martínez, Carmen; Ramos-Rodríguez, Eloísa; Conde-Porcuna, José M; Moreno, Emilio; +2 Authors

    This dataset presents relative abundance data of subfossil cladoceran remains obtained from sediment cores retrieved from six lakes at Sierra Nevada Mountains (Granada, Spain) during 2008 and 2011. The files show data over the past 180 years approximately. Sediment cores were taken from the deepest part of the lake by a slide-hammer gravity corer (Aquatic Research Instruments, USA), with a 6.9 cm inner diameter during the summer of 2011, except for Río Seco Lake core which was sampled in 2008. The cores were sectioned on-site into 0.25 cm thick layers for the upper sections of the cores and into 0.5 cm intervals for the remainder of the cores, except for Río Seco Lake core which was sectioned at 0.5 cm contiguous intervals for the entire core length. Sediment cores were dated using gamma spectrometry (DSPec, Ortec®) techniques by measuring activities of radioisotopes (210Pb, 214Bi and 137Cs) and sediment ages were estimated from unsupported 210Pb activities using the constant rate of supply (CRS) model. Cladoceran samples were processed by heating them in 10% KOH and sieved through a 38 µm mesh. The samples were mounted onto microscope slides using glycerol gelatin dyed with safranin. A minimum of 200 remains were identified and enumerated from each sediment interval under a light microscope at 200x magnification.

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    Authors: Guillerm, Emmanuel; Gardien, Véronique; Waldmann, Nicolas D; Brall, Niels S; +5 Authors

    The rain regime in the Eastern Mediterranean is primarily controlled by Mediterranean winter cyclonic systems. The lake level of the Dead Sea responds sensitively to hydrological changes, and can be used to track the evolution of the Mediterranean hydroclimate during the late Quaternary. However, lake level reconstructions beyond 70 ka are limited by a lack of paleoshorelines and dating methodologies. Here, we reconstruct the Dead Sea lake level back to 237 ka using measurements of brine density from halite fluid inclusions of the deep ICDP core 5017-1-A. We combine our mass balance-based reconstruction with an age reevaluation of published sequence stratigraphy-based lake levels, by tying their chronology to the ICDP core. The lake levels obtained with the two different methods compare very well, within better than 10 m. Combined with a compilation of published paleoshorelines for the last 70 ka, our reconstruction covers three glacial-interglacial cycles.

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    Authors: Trouche, Blandine;

    Anvi'o databases of the 47 ammonia-oxidizing archaea MAGs from abyssal and hadal surface sediments presented in Trouche et al, 2023 (https://doi.org/10.1038/s43705-023-00341-6). 

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    Authors: Daniel Moreno-Parada; Alexander Robinson; Marisa Montoya; Jorge Alvarez-Solas;

    We present the ice-sheet model Nix, an open-source project intended for collaborative development. Nix is a 2D thermomechanical model written in C/C++ that simultaneously solves for the momentum balance equations, mass conservation and temperature evolution.

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    Authors: Martínez Moreno, Josué;

    This dataset includes the NEMO 4.0.2 configuration used and analysed in the paper titled "Eddy-driven heterogeneity in sea ice during the ice-growth season". The output data is approximately 4TB for the 3 idealised configuration used in the manuscript, thus we opted to distribute the configuration. Note: The initial conditions for each simulation are compressed into the file `init_cond.zip` The configuration for one of the simulations is compressed in the file `config.zip` In order to reproduce all the runs, it's only required to change the initial conditions in the file namelist_cfg and namelist_ice_cfg. Further information and scripts to reproduce the result of the manuscript can be found at: https://github.com/josuemtzmo/Ice_formation

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