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9,593 Research products

  • European Marine Science
  • 2014-2023
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  • European Marine Science

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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Trouche, Blandine;

    Anvi'o databases of the 47 ammonia-oxidizing archaea MAGs from abyssal and hadal surface sediments presented in Trouche et al, 2023 (https://doi.org/10.1038/s43705-023-00341-6). 

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    ZENODO
    Other ORP type . 2023
    License: CC BY
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      ZENODO
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Veiros, Li; Schweinfurth, Manon K.; Webster, Mike M.;

    This work was funded by an EASTBIO DTP scholarship to A. Li Veiros. Cooperative behaviours, which benefit a recipient, are widespread in the animal kingdom; yet their evolution is not straightforward. Reciprocity, i.e., cooperating with previously experienced cooperative partners, has been suggested to underly cooperation, but has been contested throughout the years. Once a textbook example of reciprocity was cooperative predator inspection, where one or several individuals leave their group to approach a potential threat. Each can at any point stop or retreat, increasing the risk for its partner. It was suggested that inspecting individuals follow a specific reciprocal strategy called tit-for-tat, i.e., cooperating on the first move and then copying the partner's last move. Numerous studies provide evidence to support the claim that fish cooperate to inspect predators, including three-spined sticklebacks (Gasterosteus aculeatus), guppies (Poecilia reticulata) and minnows (Phoxinus phoxinus). However, over the past few decades some scholars have expressed scepticism whether predator inspection is indeed a cooperative behaviour or rather a case of by-product mutualism, which describes behaviours that benefit a partner as a corollary of an otherwise selfish behaviour. For instance, it has been shown that pairs of fish moving in unfamiliar environments appear to coordinate movements even in the absence of predators. Many studies have also used coarse measures of overall approach rates towards predators rather than the fine-grained analyses necessary to infer tit-for-tat in cooperative inspections. Now is the time to return to the question of cooperative predator inspection with new tools and approaches to resolve a decades-old debate. Publisher PDF Peer reviewed

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ St Andrews Research ...arrow_drop_down
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ St Andrews Research ...arrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Athanase, Marylou; Wang, Qiang; Danilov, Sergey; Sidorenko, Dmitry; +5 Authors

    Source code of the Finite Element Sea ice-Ocean Model version 1.4 (FESOM v1.4) used in the coupled climate model AWI-CM-1-1-MR to produce the nudged storyline simulations presented in the paper entitled "Projected amplification of summer marine heatwaves in a warming Northeast Pacific Ocean", Athanase et al. (Communications Earth & Environment). For the source code of ECHAM6, registration on the MPI-ESM user page is required (http://www.mpimet.mpg.de/en/science/models/license/).

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    ZENODO
    Model . 2023
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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      Model . 2023
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    Authors: Hamilton, Ruta;

    This is the December 2023 edition of the OCEAN:ICE Newsletter. The original newsletter is posted on the OCEAN:ICE LinkedIn. For those who do not have access to LinkedIn, we upload the newsletter to Zenodo and the website.

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    ZENODO
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      ZENODO
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Wang, Siyuan; Zhang, Futing; Koedooder, Coco; Qafoku, Odeta; +8 Authors

    The uploaded file contains three separate Python scripts aimed at modeling the sinking velocity of natural Trichodesmium colonies loaded with dust particles. Two scripts have been developed to calculate the dust influencing factor (K), and one script is dedicated to calculating the sinking velocity of particle-free Trichodesmium colonies (v0). All Python scripts are available on GitHub (https://github.com/Zhanzhu1110/Trichobuoyancy.git) and can be processed using the "Codespaces" function on GitHub. The file 'K given values' is a specialized script designed to simulate the dust factor (K), assuming seawater and dust densities of 1028 kg/m3 and 2500 kg/m3, respectively, with a colony radius of 1 mm.

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    ZENODO
    Model . 2023
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      ZENODO
      Model . 2023
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    Authors: Tomamichel, Megan; Lowe, Kaitlyn; Arnold, Kaylee; Frischer, Marc; +4 Authors

    Rapid warming could drastically alter host-parasite relationships, which is especially important for fisheries crucial to human nutrition and economic livelihoods; yet we lack a synthetic understanding of how warming influences parasite-induced mortality in these systems. We conducted a meta-analysis using 301 effect sizes from 60 empirical papers on harvested aquatic species and determined the relationship between parasite-induced host mortality and temperature and how this relationship was altered by host, parasite and study design traits. Overall, temperature increased parasite-induced host mortality; however, the magnitude and sometimes direction of this relationship varied. Hosts from the order Salmoniformes experienced a greater increase in parasite-induced mortality with temperature than average. Opportunistic parasites were correlated with a greater increase in host mortality with temperature than average, while bacterial parasite-induced mortality was lower than average as temperature increased. Thus, parasites will generally increase host mortality as the environment warms; however, this effect will vary among systems.

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    ZENODO
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    Authors: Daniel Moreno-Parada; Alexander Robinson; Marisa Montoya; Jorge Alvarez-Solas;

    We present the ice-sheet model Nix, an open-source project intended for collaborative development. Nix is a 2D thermomechanical model written in C/C++ that simultaneously solves for the momentum balance equations, mass conservation and temperature evolution.

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    Model . 2023
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    Authors: Reese, Lloyd; Gräwe, Ulf; Klingbeil, Knut; Li, Xiangyu; +2 Authors

    Supporting Python scripts used for data processing for Reese et al. (2023): "Local Mixing Determines Spatial Structure of Diahaline Exchange Flow in a Mesotidal Estuary: A Study of Extreme Runoff Conditions" [1]. River discharge information and topography as used for the numerical tidal Elbe setup applied in the same study. Contains: riverinfo.dat -- river and tributary freshwater input grid locations as grid cell indices rivers.nc -- freshwater forcing used in setup, contains sources from all included tributaries and Geesthacht. Data retrieved from [2,3,4] in combination with personal communication via the Bundesanstalt für Wasserbau (BAW). topo_smoothed_v20_z0.nc -- setup topography and curvilinear grid. Topography created from datasets [5,6], for the latter see also [7]. Python scripts used for the creation of the figures, namely: fig2: Figure 2 fig3: Figure 3 fig4: Figure 4 and Table 1 data fig5: Figure 5 and Table 2 salt data fig6: Figure 6 fig7-8: Figures 7,8 fig9: Figure 9 fig10: Figure 10 fig11: Figure 11 plot_salt_tidally-resolved: Tidally resolved stratification, not shown in paper plot_temperature_correlation_section2e: Correlation of observed and simulated temperature at same stations as Figure 5 (not shown) and Table 2 temperature data The model data used for the figures and loaded within the Python scripts is available from the corresponding author of the study [1]. Note that *paper_plot_forcing_validation.py, *paper_plot_tidal_analysis.py, and *paper_plot_salinity_correlation.py require observational data that is freely available via portal-tideelbe.de; for in-depth documentation see [1]. *paper_plot_forcing_validation.py additionally requires meteorological forcing data for the first figure panel, which cannot be made public due to its proprietary nature. The use of shapefiles to colour landmasses and plot the coastline in Figures 2, 6, and 11 has to be commented out in the respective Python scripts due to unclear copyright regarding the underlying data. However, omission of these shapefiles does not change the interpretation of the model results. ---- [1] L. Reese, U. Graewe, K. Klingbeil, X. Li, M. Lorenz, H. Burchard, 2023: Local mixing determines spatial structure of diahaline exchange flow in a mesotidal estuary – a study of extreme runoff conditions. J. Phys. Oceanogr., submitted. [2] Wasserstraßen- und Schifffahrtsamt Magdeburg, 2021: Abflussstation Neu Darchau. Wasserstraßen- und Schifffahrtsverwaltung des Bundes, accessed 10 March 2021, http://www.portal-tideelbe.de. [3] Landesamt für Landwirtschaft, Umwelt und ländliche Räume Schleswig-Holstein, 2022: Daily averaged freshwater runoff at Kellinghusen-Parkplatz and Kölln-Reisiek A23, 2012–2014. Hochwasser- und Sturmflutinformation Schleswig-Holstein, accessed 2 February 2022, https://www.umweltdaten.landsh.de/pegel/jsp/pegel.jsp?gui=ganglinie&thema=q&mstnr=114377;https://www.umweltdaten.landsh.de/pegel/jsp/pegel.jsp?mstnr=114527&wsize=free. [4] Niedersächsicher Landesbetrieb für Wasserwirtschaft, Küsten- und Naturschutz, 2022: Daily averaged freshwater runoff at gauges no. 5963101 (Oersdorf), 5945125 (Bienenbüttel), 5983110 (Rockstedt), and 5972105 (Schwinge), 2012–2014. Niedersächsische Landesdatenbank für wasserwirtschaftliche Daten, accessed 27 April 2022, http://www.wasserdaten.niedersachsen.de/cadenza/pages/home/welcome.xhtml. [5] Wasserstraßen- und Schifffahrtsamt Hamburg, 2011: DGM-W 2010 Unter- und Außenelbe (Digitales Geländemodell des Wasserlaufes - Multifunktionsmodell). Wasserstraßen- und Schifffahrtsverwaltung des Bundes, accessed 12 January 2021, https://www.kuestendaten.de/Tideelbe/DE/Service/Kartenthemen/Kartenthemen_node.html [6] Bundesamt für Seeschifffahrt und Hydrographie, 2019: AufMod Bathymetries German Bight 1982-2012 - WMS. Wasserstraßen- und Schifffahrtsverwaltung des Bundes, accessed 28 May 2013, https://gdk.gdi-de.org/geonetwork/srv/api/records/3543c490-d251-4948-830c-1da723a1a8eb. [7] Heyer, H., and K. Schrottke, 2015: Einführung, Aufgabenstellung und Bearbeitungsstruktur im KFKI-Projekt AufMod. Die Küste, 83, 1–18, ISBN: 978-3-939230-40-3.

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    Authors: Martínez Moreno, Josué;

    This dataset includes the NEMO 4.0.2 configuration used and analysed in the paper titled "Eddy-driven heterogeneity in sea ice during the ice-growth season". The output data is approximately 4TB for the 3 idealised configuration used in the manuscript, thus we opted to distribute the configuration. Note: The initial conditions for each simulation are compressed into the file `init_cond.zip` The configuration for one of the simulations is compressed in the file `config.zip` In order to reproduce all the runs, it's only required to change the initial conditions in the file namelist_cfg and namelist_ice_cfg. Further information and scripts to reproduce the result of the manuscript can be found at: https://github.com/josuemtzmo/Ice_formation

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    Authors: King, Amy;

    Bootstrapped Monte Carlo spline and confidence interval generation for ice core gas records in: 'Reconciling ice core CO2 and land-use change following New World-Old World contact'.

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    Authors: Trouche, Blandine;

    Anvi'o databases of the 47 ammonia-oxidizing archaea MAGs from abyssal and hadal surface sediments presented in Trouche et al, 2023 (https://doi.org/10.1038/s43705-023-00341-6). 

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    Authors: Veiros, Li; Schweinfurth, Manon K.; Webster, Mike M.;

    This work was funded by an EASTBIO DTP scholarship to A. Li Veiros. Cooperative behaviours, which benefit a recipient, are widespread in the animal kingdom; yet their evolution is not straightforward. Reciprocity, i.e., cooperating with previously experienced cooperative partners, has been suggested to underly cooperation, but has been contested throughout the years. Once a textbook example of reciprocity was cooperative predator inspection, where one or several individuals leave their group to approach a potential threat. Each can at any point stop or retreat, increasing the risk for its partner. It was suggested that inspecting individuals follow a specific reciprocal strategy called tit-for-tat, i.e., cooperating on the first move and then copying the partner's last move. Numerous studies provide evidence to support the claim that fish cooperate to inspect predators, including three-spined sticklebacks (Gasterosteus aculeatus), guppies (Poecilia reticulata) and minnows (Phoxinus phoxinus). However, over the past few decades some scholars have expressed scepticism whether predator inspection is indeed a cooperative behaviour or rather a case of by-product mutualism, which describes behaviours that benefit a partner as a corollary of an otherwise selfish behaviour. For instance, it has been shown that pairs of fish moving in unfamiliar environments appear to coordinate movements even in the absence of predators. Many studies have also used coarse measures of overall approach rates towards predators rather than the fine-grained analyses necessary to infer tit-for-tat in cooperative inspections. Now is the time to return to the question of cooperative predator inspection with new tools and approaches to resolve a decades-old debate. Publisher PDF Peer reviewed

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    Authors: Athanase, Marylou; Wang, Qiang; Danilov, Sergey; Sidorenko, Dmitry; +5 Authors

    Source code of the Finite Element Sea ice-Ocean Model version 1.4 (FESOM v1.4) used in the coupled climate model AWI-CM-1-1-MR to produce the nudged storyline simulations presented in the paper entitled "Projected amplification of summer marine heatwaves in a warming Northeast Pacific Ocean", Athanase et al. (Communications Earth & Environment). For the source code of ECHAM6, registration on the MPI-ESM user page is required (http://www.mpimet.mpg.de/en/science/models/license/).

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    Authors: Hamilton, Ruta;

    This is the December 2023 edition of the OCEAN:ICE Newsletter. The original newsletter is posted on the OCEAN:ICE LinkedIn. For those who do not have access to LinkedIn, we upload the newsletter to Zenodo and the website.

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    Authors: Wang, Siyuan; Zhang, Futing; Koedooder, Coco; Qafoku, Odeta; +8 Authors

    The uploaded file contains three separate Python scripts aimed at modeling the sinking velocity of natural Trichodesmium colonies loaded with dust particles. Two scripts have been developed to calculate the dust influencing factor (K), and one script is dedicated to calculating the sinking velocity of particle-free Trichodesmium colonies (v0). All Python scripts are available on GitHub (https://github.com/Zhanzhu1110/Trichobuoyancy.git) and can be processed using the "Codespaces" function on GitHub. The file 'K given values' is a specialized script designed to simulate the dust factor (K), assuming seawater and dust densities of 1028 kg/m3 and 2500 kg/m3, respectively, with a colony radius of 1 mm.

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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      ZENODO
      Model . 2023
      License: CC BY
      Data sources: ZENODO
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