Fripiat, François; Marconi, Dario; Rafter, P.A.; Sigman, Daniel M; Atlabet, Mark A; Bourbonnais, Annie; Brandes, Jay; Casciotti, Karen K.L.; Deman, Florian; Dehairs, F.; +25 more
Fripiat, François; Marconi, Dario; Rafter, P.A.; Sigman, Daniel M; Atlabet, Mark A; Bourbonnais, Annie; Brandes, Jay; Casciotti, Karen K.L.; Deman, Florian; Dehairs, F.; Emeis, Kay-Christian; Fawcett, Sarah E.; Galbraith, Eric D; Gaye, Birgit; Granger, Julie; Harms, Nathalie; Haug, Gerald H.; Kemeny, Preston; Kienast, Markus; Knapp, Angela; Kopf, Sebastian; Lehmann, Moritz M.F.; Luu, Victoria H; Martin, Taylor; Martínez-García, Alfredo; Pantoja, Sylvio; Peng, Xuefeng; Peters, Brian; Smart, Sandi; Trull, Thomas W.; Van Oostende, Nicolas; Voss, Maren; Yoshikawa, Chisato; Zhang, Run; Dähnke, Kirstin;
Publisher: PANGAEA - Data Publisher for Earth & Environmental Science
The database for nitrate concentrations and nitrate δ15N includes new data and most of the measurements that have been published to date. This database also includes most of the nitrate δ15N measurements in the database of Rafter et al. (2019; Biogeosciences 16, 2617-2633; https://doi.org/10.5194/bg-16-2617-2019). It consists of 944 stations with 15300 measurements of nitrate δ15N. All data are uploaded, except the GOSHIP P2 and P6 sections for which we report average profiles vs. depth. Full data sets for these sections will be included upon publication in a follow-up version. The exact dates for each event are not available for most of the data, thus the starting and end dates (or months) of the cruises are given.Sampling method: CTD/rosette
Ice sheet numerical modeling is an important tool to estimate the dynamic contribution of the Antarctic ice sheet to sea level rise over the coming centuries. The influence of initial conditions on ice sheet model simulations, however, is still unclear. To better understand this influence, an initial state intercomparison exercise (initMIP) has been developed to compare, evaluate, and improve initialization procedures and estimate their impact on century-scale simulations. initMIP is the first set of experiments of the Ice Sheet Model Intercomparison Project for CMIP6 (ISMIP6), which is the primary Coupled Model Intercomparison Project Phase 6 (CMIP6) activity focusing on the Greenland and Antarctic ice sheets. Following initMIP-Greenland, initMIP-Antarctica has been designed to explore uncertainties associated with model initialization and spin-up and to evaluate the impact of changes in external forcings. Starting from the state of the Antarctic ice sheet at the end of the initialization procedure, three forward experiments are each run for 100 years: a control run, a run with a surface mass balance anomaly, and a run with a basal melting anomaly beneath floating ice. This study presents the results of initMIP-Antarctica from 25 simulations performed by 16 international modeling groups. The submitted results use different initial conditions and initialization methods, as well as ice flow model parameters and reference external forcings. We find a good agreement among model responses to the surface mass balance anomaly but large variations in responses to the basal melting anomaly. These variations can be attributed to differences in the extent of ice shelves and their upstream tributaries, the numerical treatment of grounding line, and the initial ocean conditions applied, suggesting that ongoing efforts to better represent ice shelves in continental-scale models should continue.
Geerlings, Nicole M. J.; Zetsche, Eva-Maria; Hidalgo-Martinez, Silvia; Middelburg, Jack J.; Meysman, Filip J. R.;
Geerlings, Nicole M. J.; Zetsche, Eva-Maria; Hidalgo-Martinez, Silvia; Middelburg, Jack J.; Meysman, Filip J. R.;
Project: EC | BIPHA (660481), NWO | The impact of cable bacte... (2300189430), EC | SEDBIOGEOCHEM2.0 (306933)
Cable bacteria are multicellular, filamentous microorganisms that are capable of transporting electrons over centimeter-scale distances. Although recently discovered, these bacteria appear to be widely present in the seafloor, and when active they exert a strong imprint on the local geochemistry. In particular, their electrogenic metabolism induces unusually strong pH excursions in aquatic sediments, which induces considerable mineral dissolution, and subsequent mineral reprecipitation. However, at present, it is unknown whether and how cable bacteria play an active or direct role in the mineral reprecipitation process. To this end we present an explorative study of the formation of sedimentary minerals in and near filamentous cable bacteria using a combined approach of electron microscopy and spectroscopic techniques. Our observations reveal the formation of polyphosphate granules within the cells and two different types of biomineral formation directly associated with multicellular filaments of these cable bacteria: (i) the attachment and incorporation of clay particles in a coating surrounding the bacteria and (ii) encrustation of the cell envelope by iron minerals. These findings suggest a complex interaction between cable bacteria and the surrounding sediment matrix, and a substantial imprint of the electrogenic metabolism on mineral diagenesis and sedimentary biogeochemical cycling. In particular, the encrustation process leaves many open questions for further research. For example, we hypothesize that the complete encrustation of filaments might create a diffusion barrier and negatively impact the metabolism of the cable bacteria.
Future deep-sea mining for polymetallic nodules in abyssal plains will negatively impact the benthic ecosystem, but it is largely unclear whether this ecosystem will be able to recover from mining disturbance and if so, to what extent and at what timescale. During the “DISturbance and reCOLonization” (DISCOL) experiment, a total of 22 % of the seafloor within a 10.8 km2 circular area of the nodule-rich seafloor in the Peru Basin (SE Pacific) was ploughed in 1989 to bury nodules and mix the surface sediment. This area was revisited 0.1, 0.5, 3, 7, and 26 years after the disturbance to assess macrofauna, invertebrate megafauna and fish density and diversity. We used this unique abyssal faunal time series to develop carbon-based food web models for each point in the time series using the linear inverse modeling approach for sediments subjected to two disturbance levels: (1) outside the plough tracks; not directly disturbed by plough, but probably suffered from additional sedimentation; and (2) inside the plough tracks. Total faunal carbon stock was always higher outside plough tracks compared with inside plough tracks. After 26 years, the carbon stock inside the plough tracks was 54 % of the carbon stock outside plough tracks. Deposit feeders were least affected by the disturbance, with modeled respiration, external predation, and excretion rates being reduced by only 2.6 % inside plough tracks compared with outside plough tracks after 26 years. In contrast, the respiration rate of filter and suspension feeders was 79.5 % lower in the plough tracks after 26 years. The “total system throughput” (T..), i.e., the total sum of modeled carbon flows in the food web, was higher throughout the time series outside plough tracks compared with the corresponding inside plough tracks area and was lowest inside plough tracks directly after the disturbance (8.63 × 10−3 ± 1.58 × 10−5 mmol C m−2 d−1). Even 26 years after the DISCOL disturbance, the discrepancy of T.. between outside and inside plough tracks was still 56 %. Hence, C cycling within the faunal compartments of an abyssal plain ecosystem remains reduced 26 years after physical disturbance, and a longer period is required for the system to recover from such a small-scale sediment disturbance experiment.
We present a mapped climatology (GLODAPv2.2016b) of ocean biogeochemical variables based on the new GLODAP version 2 data product (Olsen et al., 2016; Key et al., 2015), which covers all ocean basins over the years 1972 to 2013. The quality-controlled and internally consistent GLODAPv2 was used to create global 1° × 1° mapped climatologies of salinity, temperature, oxygen, nitrate, phosphate, silicate, total dissolved inorganic carbon (TCO2), total alkalinity (TAlk), pH, and CaCO3 saturation states using the Data-Interpolating Variational Analysis (DIVA) mapping method. Improving on maps based on an earlier but similar dataset, GLODAPv1.1, this climatology also covers the Arctic Ocean. Climatologies were created for 33 standard depth surfaces. The conceivably confounding temporal trends in TCO2 and pH due to anthropogenic influence were removed prior to mapping by normalizing these data to the year 2002 using first-order calculations of anthropogenic carbon accumulation rates. We additionally provide maps of accumulated anthropogenic carbon in the year 2002 and of preindustrial TCO2. For all parameters, all data from the full 1972–2013 period were used, including data that did not receive full secondary quality control. The GLODAPv2.2016b global 1° × 1° mapped climatologies, including error fields and ancillary information, are available at the GLODAPv2 web page at the Carbon Dioxide Information Analysis Center (CDIAC; doi:10.3334/CDIAC/OTG.NDP093_GLODAPv2).
The Black Sea northwestern shelf (NWS) is a shallow eutrophic area in which the seasonal stratification of the water column isolates the bottom waters from the atmosphere. This prevents ventilation from counterbalancing the large consumption of oxygen due to respiration in the bottom waters and in the sediments, and sets the stage for the development of seasonal hypoxia. A three-dimensional (3-D) coupled physical–biogeochemical model is used to investigate the dynamics of bottom hypoxia in the Black Sea NWS, first at seasonal and then at interannual scales (1981–2009), and to differentiate its driving factors (climatic versus eutrophication). Model skills are evaluated by a quantitative comparison of the model results to 14 123 in situ oxygen measurements available in the NOAA World Ocean and the Black Sea Commission databases, using different error metrics. This validation exercise shows that the model is able to represent the seasonal and interannual variability of the oxygen concentration and of the occurrence of hypoxia, as well as the spatial distribution of oxygen-depleted waters. During the period 1981–2009, each year exhibits seasonal bottom hypoxia at the end of summer. This phenomenon essentially covers the northern part of the NWS – which receives large inputs of nutrients from the Danube, Dniester and Dnieper rivers – and extends, during the years of severe hypoxia, towards the Romanian bay of Constanta. An index H which merges the aspects of the spatial and temporal extension of the hypoxic event is proposed to quantify, for each year, the intensity of hypoxia as an environmental stressor. In order to explain the interannual variability of H and to disentangle its drivers, we analyze the long time series of model results by means of a stepwise multiple linear regression. This statistical model gives a general relationship that links the intensity of hypoxia to eutrophication and climate-related variables. A total of 82% of the interannual variability of H is explained by the combination of four predictors: the annual riverine nitrate load (N), the sea surface temperature in the month preceding stratification (Ts), the amount of semi-labile organic matter accumulated in the sediments (C) and the sea surface temperature during late summer (Tf). Partial regression indicates that the climatic impact on hypoxia is almost as important as that of eutrophication. Accumulation of organic matter in the sediments introduces an important inertia in the recovery process after eutrophication, with a typical timescale of 9.3 yr. Seasonal fluctuations and the heterogeneous spatial distribution complicate the monitoring of bottom hypoxia, leading to contradictory conclusions when the interpretation is done from different sets of data. In particular, it appears that the recovery reported in the literature after 1995 was overestimated due to the use of observations concentrated in areas and months not typically affected by hypoxia. This stresses the urgent need for a dedicated monitoring effort in the Black Sea NWS focused on the areas and months concerned by recurrent hypoxic events.
Coastal areas are impacted by multiple natural and anthropogenic processes and experience stronger pH fluctuations than the open ocean. These variations can weaken or intensify the ocean acidification signal induced by increasing atmospheric pCO2. The development of eutrophication-induced hypoxia intensifies coastal acidification, since the CO2 produced during respiration decreases the buffering capacity in any hypoxic bottom water. To assess the combined ecosystem impacts of acidification and hypoxia, we quantified the seasonal variation in pH and oxygen dynamics in the water column of a seasonally stratified coastal basin (Lake Grevelingen, the Netherlands). Monthly water-column chemistry measurements were complemented with estimates of primary production and respiration using O2 light–dark incubations, in addition to sediment–water fluxes of dissolved inorganic carbon (DIC) and total alkalinity (TA). The resulting data set was used to set up a proton budget on a seasonal scale. Temperature-induced seasonal stratification combined with a high community respiration was responsible for the depletion of oxygen in the bottom water in summer. The surface water showed strong seasonal variation in process rates (primary production, CO2 air–sea exchange), but relatively small seasonal pH fluctuations (0.46 units on the total hydrogen ion scale). In contrast, the bottom water showed less seasonality in biogeochemical rates (respiration, sediment–water exchange), but stronger pH fluctuations (0.60 units). This marked difference in pH dynamics could be attributed to a substantial reduction in the acid–base buffering capacity of the hypoxic bottom water in the summer period. Our results highlight the importance of acid–base buffering in the pH dynamics of coastal systems and illustrate the increasing vulnerability of hypoxic, CO2-rich waters to any acidifying process.
Predicting the climate for the future and how it will impact ice sheet evolution requires coupling ice sheet models with climate models. However, before we attempt to develop a realistic coupled setup, we propose, in this study, to first analyse the impact of a model simulated climate on an ice sheet. We undertake this exercise for a set of regional and global climate models. Modelled near surface air temperature and precipitation are provided as upper boundary conditions to the GRISLI (GRenoble Ice Shelf and Land Ice model) hybrid ice sheet model (ISM) in its Greenland configuration. After 20 kyrs of simulation, the resulting ice sheets highlight the differences between the climate models. While modelled ice sheet sizes are generally comparable to the observed one, there are considerable deviations among the ice sheets on regional scales. These deviations can be explained by biases in temperature and precipitation near the coast. This is especially true in the case of global models. But the deviations between the climate models are also due to the differences in the atmospheric general circulation. To account for these differences in the context of coupling ice sheet models with climate models, we conclude that appropriate downscaling methods will be needed. In some cases, systematic corrections of the climatic variables at the interface may be required to obtain realistic results for the Greenland ice sheet (GIS).
Masson-Delmotte, V.; Steen-Larsen, H. C.; Ortega, P.; Swingedouw, D.; Popp, T.; Vinther, B. M.; Oerter, H.; Sveinbjornsdottir, A. E.; Gudlaugsdottir, H.; Box, J. E.; +13 more
Masson-Delmotte, V.; Steen-Larsen, H. C.; Ortega, P.; Swingedouw, D.; Popp, T.; Vinther, B. M.; Oerter, H.; Sveinbjornsdottir, A. E.; Gudlaugsdottir, H.; Box, J. E.; Falourd, S.; Fettweis, X.; Gallée, H.; Garnier, E.; Gkinis, V.; Jouzel, J.; Landais, A.; Minster, B.; Paradis, N.; Orsi, A.; Risi, C.; Werner, M.; White, J. W. C.;
Project: EC | PAST4FUTURE (243908)
Combined records of snow accumulation rate, δ18O and deuterium excess were produced from several shallow ice cores and snow pits at NEEM (North Greenland Eemian Ice Drilling), covering the period from 1724 to 2007. They are used to investigate recent climate variability and characterise the isotope–temperature relationship. We find that NEEM records are only weakly affected by inter-annual changes in the North Atlantic Oscillation. Decadal δ18O and accumulation variability is related to North Atlantic sea surface temperature and is enhanced at the beginning of the 19th century. No long-term trend is observed in the accumulation record. By contrast, NEEM δ18O shows multidecadal increasing trends in the late 19th century and since the 1980s. The strongest annual positive δ18O values are recorded at NEEM in 1928 and 2010, while maximum accumulation occurs in 1933. The last decade is the most enriched in δ18O (warmest), while the 11-year periods with the strongest depletion (coldest) are depicted at NEEM in 1815–1825 and 1836–1846, which are also the driest 11-year periods. The NEEM accumulation and δ18O records are strongly correlated with outputs from atmospheric models, nudged to atmospheric reanalyses. Best performance is observed for ERA reanalyses. Gridded temperature reconstructions, instrumental data and model outputs at NEEM are used to estimate the multidecadal accumulation–temperature and δ18O–temperature relationships for the strong warming period in 1979–2007. The accumulation sensitivity to temperature is estimated at 11 ± 2 % °C−1 and the δ18O–temperature slope at 1.1 ± 0.2 ‰ °C−1, about twice as large as previously used to estimate last interglacial temperature change from the bottom part of the NEEM deep ice core.