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Supplementary tables (Table S1-15) from Marine transmissible cancer navigates urbanized waters, threatening to spillover
Research datakeyboard_double_arrow_right Dataset 2024Publisher:The Royal SocietyFunded by:ANR | TRANSCAN
ANR| TRANSCAN
Authors: HAMMEL, M.; Touchard, F.; Burioli, E. A. V.; Paradis, L.; +9 Authors
HAMMEL, M.; Touchard, F.; Burioli, E. A. V.; Paradis, L.; Cerqueira, F.; Chailler, E.; Bernard, I.; Cochet, H.; Simon, A.; THOMAS, F.; Destoumieux-Garzón, D.; Charrière, G. M.; Bierne, N.;
doi: 10.6084/m9.figshare.25148886.v1 , 10.6084/m9.figshare.25148886
doi: 10.6084/m9.figshare.25148886.v1 , 10.6084/m9.figshare.25148886
This document contains all raw data, environemental data sources, primers sequences, PCR results and statistical results. Each table is referred in the main document.
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Table S6.xlsx from Transcriptomics of mussel transmissible cancer MtrBTN2 suggests accumulation of multiple cancer traits and oncogenic pathways shared among bilaterians
Research datakeyboard_double_arrow_right Dataset 2023Publisher:The Royal SocietyFunded by:INCa
INCa
Authors: Burioli, E. A. V.; Hammel, M.; Vignal, E.; Vidal-Dupiol, J.; +5 Authors
Burioli, E. A. V.; Hammel, M.; Vignal, E.; Vidal-Dupiol, J.; Mitta, G.; Thomas, F.; Bierne, N.; Destoumieux-Garzón, D.; Charrière, G. M.;
doi: 10.6084/m9.figshare.24278389 , 10.6084/m9.figshare.24278389.v1
doi: 10.6084/m9.figshare.24278389 , 10.6084/m9.figshare.24278389.v1
Table S6: List of genes clustered by Gene Ontology (GO) terms comprised in enriched biological processes (p.adj<0.05).
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Table S1.txt from Transcriptomics of mussel transmissible cancer MtrBTN2 suggests accumulation of multiple cancer traits and oncogenic pathways shared among bilaterians
Research datakeyboard_double_arrow_right Dataset 2023Publisher:The Royal SocietyFunded by:INCa
INCa
Authors: Burioli, E. A. V.; Hammel, M.; Vignal, E.; Vidal-Dupiol, J.; +5 Authors
Burioli, E. A. V.; Hammel, M.; Vignal, E.; Vidal-Dupiol, J.; Mitta, G.; Thomas, F.; Bierne, N.; Destoumieux-Garzón, D.; Charrière, G. M.;
doi: 10.6084/m9.figshare.24278368 , 10.6084/m9.figshare.24278368.v1
doi: 10.6084/m9.figshare.24278368 , 10.6084/m9.figshare.24278368.v1
Table S1: Transcript annotation
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Figure S1.jpg from Transcriptomics of mussel transmissible cancer MtrBTN2 suggests accumulation of multiple cancer traits and oncogenic pathways shared among bilaterians
Research datakeyboard_double_arrow_right Image 2023Publisher:The Royal SocietyFunded by:INCa
INCa
Authors: Burioli, E. A. V.; Hammel, M.; Vignal, E.; Vidal-Dupiol, J.; +5 Authors
Burioli, E. A. V.; Hammel, M.; Vignal, E.; Vidal-Dupiol, J.; Mitta, G.; Thomas, F.; Bierne, N.; Destoumieux-Garzón, D.; Charrière, G. M.;
doi: 10.6084/m9.figshare.24278392 , 10.6084/m9.figshare.24278392.v1
doi: 10.6084/m9.figshare.24278392 , 10.6084/m9.figshare.24278392.v1
Figure S1: Validation of the results obtained from RNAseq data by RT-qPCR quantification on 10 additional samples (cancerous: CAN7-11, healthy: EDU7-11). A) Normalised Ct values (mean of three replicates) of 17 selected genes with contrasting expression levels and oncogenic relevance. Normalisation was performed on the mean of the Ct of three constitutively expressed genes (GAPDH, RPS28 and UBE2D3) within each sample; B) Comparison of Log2FC values between the two quantification methods (RT-qPCR and RNA-seq): Log2FCs for RNA-seq data have been calculated with DESeq2 on 9 samples (CAN1-3, EDU1-3, TRO1-3) and Log2FCs for RT-qPCRs have been calculated as follow for the 10 additional individuals (CAN7-11, EDU7-11): FC= efficiency of the qPCR mean of Ct of the 5 MtrBTN2-affected individuals - mean of Ct of the 5 MtrBTN2-free individuals
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Table S8.xlsx from Transcriptomics of mussel transmissible cancer MtrBTN2 suggests accumulation of multiple cancer traits and oncogenic pathways shared among bilaterians
Research datakeyboard_double_arrow_right Dataset 2023Publisher:The Royal SocietyFunded by:INCa
INCa
Authors: Burioli, E. A. V.; Hammel, M.; Vignal, E.; Vidal-Dupiol, J.; +5 Authors
Burioli, E. A. V.; Hammel, M.; Vignal, E.; Vidal-Dupiol, J.; Mitta, G.; Thomas, F.; Bierne, N.; Destoumieux-Garzón, D.; Charrière, G. M.;
doi: 10.6084/m9.figshare.24278404.v1 , 10.6084/m9.figshare.24278404
doi: 10.6084/m9.figshare.24278404.v1 , 10.6084/m9.figshare.24278404
Table S8: SNVs present in all MtrBTN2 samples and absent in MtrBTN2-free samples. VAF, variant allele frequency.
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Table S3.xlsx from Transcriptomics of mussel transmissible cancer MtrBTN2 suggests accumulation of multiple cancer traits and oncogenic pathways shared among bilaterians
Research datakeyboard_double_arrow_right Dataset 2023Publisher:The Royal SocietyFunded by:INCa
INCa
Authors: Burioli, E. A. V.; Hammel, M.; Vignal, E.; Vidal-Dupiol, J.; +5 Authors
Burioli, E. A. V.; Hammel, M.; Vignal, E.; Vidal-Dupiol, J.; Mitta, G.; Thomas, F.; Bierne, N.; Destoumieux-Garzón, D.; Charrière, G. M.;
doi: 10.6084/m9.figshare.24278380.v1 , 10.6084/m9.figshare.24278380
doi: 10.6084/m9.figshare.24278380.v1 , 10.6084/m9.figshare.24278380
Table S3: Samplings of Mytilus mussels used in the study.
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Figure S7.tif from Transcriptomics of mussel transmissible cancer MtrBTN2 suggests accumulation of multiple cancer traits and oncogenic pathways shared among bilaterians
Research datakeyboard_double_arrow_right Image 2023Publisher:The Royal SocietyFunded by:INCa
INCa
Authors: Burioli, E. A. V.; Hammel, M.; Vignal, E.; Vidal-Dupiol, J.; +5 Authors
Burioli, E. A. V.; Hammel, M.; Vignal, E.; Vidal-Dupiol, J.; Mitta, G.; Thomas, F.; Bierne, N.; Destoumieux-Garzón, D.; Charrière, G. M.;
doi: 10.6084/m9.figshare.24278401 , 10.6084/m9.figshare.24278401.v1
doi: 10.6084/m9.figshare.24278401 , 10.6084/m9.figshare.24278401.v1
Figure S7: RDA on normalized read counts to analyze the impact of explanatory variables (“cell type”: hemocyte/MtrBTN2 cells, species: trossulus/edulis, “environment”: Barents Sea/Channel Sea) on response variables (gene expression) followed by ANOVA like permutation test (nperm=999, model=“full”). Both “cell type” and “environment” were retained as significant explanatory variables (p<0.05).
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Figure S6.jpeg from Transcriptomics of mussel transmissible cancer MtrBTN2 suggests accumulation of multiple cancer traits and oncogenic pathways shared among bilaterians
Research datakeyboard_double_arrow_right Image 2023Publisher:The Royal SocietyFunded by:INCa
INCa
Authors: Burioli, E. A. V.; Hammel, M.; Vignal, E.; Vidal-Dupiol, J.; +5 Authors
Burioli, E. A. V.; Hammel, M.; Vignal, E.; Vidal-Dupiol, J.; Mitta, G.; Thomas, F.; Bierne, N.; Destoumieux-Garzón, D.; Charrière, G. M.;
doi: 10.6084/m9.figshare.24278377.v1 , 10.6084/m9.figshare.24278377
doi: 10.6084/m9.figshare.24278377.v1 , 10.6084/m9.figshare.24278377
Figure S6: Top-expressed transcripts of genes in whole flesh of MtrBTN2-affected additional samples (CAN 4–6).
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Table S4.xlsx from Transcriptomics of mussel transmissible cancer MtrBTN2 suggests accumulation of multiple cancer traits and oncogenic pathways shared among bilaterians
Research datakeyboard_double_arrow_right Dataset 2023Publisher:The Royal SocietyFunded by:INCa
INCa
Authors: Burioli, E. A. V.; Hammel, M.; Vignal, E.; Vidal-Dupiol, J.; +5 Authors
Burioli, E. A. V.; Hammel, M.; Vignal, E.; Vidal-Dupiol, J.; Mitta, G.; Thomas, F.; Bierne, N.; Destoumieux-Garzón, D.; Charrière, G. M.;
doi: 10.6084/m9.figshare.24278410 , 10.6084/m9.figshare.24278410.v1
doi: 10.6084/m9.figshare.24278410 , 10.6084/m9.figshare.24278410.v1
Table S4: List of the transcripts significantly differentially expressed with descriptions, Gene IDs, log2FC, mean normalised abundance, FDR, and QuantEval validation.
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Figure S3.jpg from Transcriptomics of mussel transmissible cancer MtrBTN2 suggests accumulation of multiple cancer traits and oncogenic pathways shared among bilaterians
Research datakeyboard_double_arrow_right Image 2023Publisher:The Royal SocietyFunded by:INCa
INCa
Authors: Burioli, E. A. V.; Hammel, M.; Vignal, E.; Vidal-Dupiol, J.; +5 Authors
Burioli, E. A. V.; Hammel, M.; Vignal, E.; Vidal-Dupiol, J.; Mitta, G.; Thomas, F.; Bierne, N.; Destoumieux-Garzón, D.; Charrière, G. M.;
doi: 10.6084/m9.figshare.24278407.v1 , 10.6084/m9.figshare.24278407
doi: 10.6084/m9.figshare.24278407.v1 , 10.6084/m9.figshare.24278407
Figure S3: Spearman's correlation between transcript and component (QuantEval) Log2FC. Orange points represent the 102 transcripts for which the significance of the differential expression obtained with DESeq2 v1.34 was not confirmed at the component level (FDR>0.05).
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Supplementary tables (Table S1-15) from Marine transmissible cancer navigates urbanized waters, threatening to spillover
Research datakeyboard_double_arrow_right Dataset 2024Publisher:The Royal SocietyFunded by:ANR | TRANSCAN
ANR| TRANSCAN
Authors: HAMMEL, M.; Touchard, F.; Burioli, E. A. V.; Paradis, L.; +9 Authors
HAMMEL, M.; Touchard, F.; Burioli, E. A. V.; Paradis, L.; Cerqueira, F.; Chailler, E.; Bernard, I.; Cochet, H.; Simon, A.; THOMAS, F.; Destoumieux-Garzón, D.; Charrière, G. M.; Bierne, N.;
doi: 10.6084/m9.figshare.25148886.v1 , 10.6084/m9.figshare.25148886
doi: 10.6084/m9.figshare.25148886.v1 , 10.6084/m9.figshare.25148886
This document contains all raw data, environemental data sources, primers sequences, PCR results and statistical results. Each table is referred in the main document.
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Table S6.xlsx from Transcriptomics of mussel transmissible cancer MtrBTN2 suggests accumulation of multiple cancer traits and oncogenic pathways shared among bilaterians
Research datakeyboard_double_arrow_right Dataset 2023Publisher:The Royal SocietyFunded by:INCa
INCa
Authors: Burioli, E. A. V.; Hammel, M.; Vignal, E.; Vidal-Dupiol, J.; +5 Authors
Burioli, E. A. V.; Hammel, M.; Vignal, E.; Vidal-Dupiol, J.; Mitta, G.; Thomas, F.; Bierne, N.; Destoumieux-Garzón, D.; Charrière, G. M.;
doi: 10.6084/m9.figshare.24278389 , 10.6084/m9.figshare.24278389.v1
doi: 10.6084/m9.figshare.24278389 , 10.6084/m9.figshare.24278389.v1
Table S6: List of genes clustered by Gene Ontology (GO) terms comprised in enriched biological processes (p.adj<0.05).
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Table S1.txt from Transcriptomics of mussel transmissible cancer MtrBTN2 suggests accumulation of multiple cancer traits and oncogenic pathways shared among bilaterians
Research datakeyboard_double_arrow_right Dataset 2023Publisher:The Royal SocietyFunded by:INCa
INCa
Authors: Burioli, E. A. V.; Hammel, M.; Vignal, E.; Vidal-Dupiol, J.; +5 Authors
Burioli, E. A. V.; Hammel, M.; Vignal, E.; Vidal-Dupiol, J.; Mitta, G.; Thomas, F.; Bierne, N.; Destoumieux-Garzón, D.; Charrière, G. M.;
doi: 10.6084/m9.figshare.24278368 , 10.6084/m9.figshare.24278368.v1
doi: 10.6084/m9.figshare.24278368 , 10.6084/m9.figshare.24278368.v1
Table S1: Transcript annotation
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Figure S1.jpg from Transcriptomics of mussel transmissible cancer MtrBTN2 suggests accumulation of multiple cancer traits and oncogenic pathways shared among bilaterians
Research datakeyboard_double_arrow_right Image 2023Publisher:The Royal SocietyFunded by:INCa
INCa
Authors: Burioli, E. A. V.; Hammel, M.; Vignal, E.; Vidal-Dupiol, J.; +5 Authors
Burioli, E. A. V.; Hammel, M.; Vignal, E.; Vidal-Dupiol, J.; Mitta, G.; Thomas, F.; Bierne, N.; Destoumieux-Garzón, D.; Charrière, G. M.;
doi: 10.6084/m9.figshare.24278392 , 10.6084/m9.figshare.24278392.v1
doi: 10.6084/m9.figshare.24278392 , 10.6084/m9.figshare.24278392.v1
Figure S1: Validation of the results obtained from RNAseq data by RT-qPCR quantification on 10 additional samples (cancerous: CAN7-11, healthy: EDU7-11). A) Normalised Ct values (mean of three replicates) of 17 selected genes with contrasting expression levels and oncogenic relevance. Normalisation was performed on the mean of the Ct of three constitutively expressed genes (GAPDH, RPS28 and UBE2D3) within each sample; B) Comparison of Log2FC values between the two quantification methods (RT-qPCR and RNA-seq): Log2FCs for RNA-seq data have been calculated with DESeq2 on 9 samples (CAN1-3, EDU1-3, TRO1-3) and Log2FCs for RT-qPCRs have been calculated as follow for the 10 additional individuals (CAN7-11, EDU7-11): FC= efficiency of the qPCR mean of Ct of the 5 MtrBTN2-affected individuals - mean of Ct of the 5 MtrBTN2-free individuals
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Table S8.xlsx from Transcriptomics of mussel transmissible cancer MtrBTN2 suggests accumulation of multiple cancer traits and oncogenic pathways shared among bilaterians
Research datakeyboard_double_arrow_right Dataset 2023Publisher:The Royal SocietyFunded by:INCa
INCa
Authors: Burioli, E. A. V.; Hammel, M.; Vignal, E.; Vidal-Dupiol, J.; +5 Authors
Burioli, E. A. V.; Hammel, M.; Vignal, E.; Vidal-Dupiol, J.; Mitta, G.; Thomas, F.; Bierne, N.; Destoumieux-Garzón, D.; Charrière, G. M.;
doi: 10.6084/m9.figshare.24278404.v1 , 10.6084/m9.figshare.24278404
doi: 10.6084/m9.figshare.24278404.v1 , 10.6084/m9.figshare.24278404
Table S8: SNVs present in all MtrBTN2 samples and absent in MtrBTN2-free samples. VAF, variant allele frequency.
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Table S3.xlsx from Transcriptomics of mussel transmissible cancer MtrBTN2 suggests accumulation of multiple cancer traits and oncogenic pathways shared among bilaterians
Research datakeyboard_double_arrow_right Dataset 2023Publisher:The Royal SocietyFunded by:INCa
INCa
Authors: Burioli, E. A. V.; Hammel, M.; Vignal, E.; Vidal-Dupiol, J.; +5 Authors
Burioli, E. A. V.; Hammel, M.; Vignal, E.; Vidal-Dupiol, J.; Mitta, G.; Thomas, F.; Bierne, N.; Destoumieux-Garzón, D.; Charrière, G. M.;
doi: 10.6084/m9.figshare.24278380.v1 , 10.6084/m9.figshare.24278380
doi: 10.6084/m9.figshare.24278380.v1 , 10.6084/m9.figshare.24278380
Table S3: Samplings of Mytilus mussels used in the study.
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Figure S7.tif from Transcriptomics of mussel transmissible cancer MtrBTN2 suggests accumulation of multiple cancer traits and oncogenic pathways shared among bilaterians
Research datakeyboard_double_arrow_right Image 2023Publisher:The Royal SocietyFunded by:INCa
INCa
Authors: Burioli, E. A. V.; Hammel, M.; Vignal, E.; Vidal-Dupiol, J.; +5 Authors
Burioli, E. A. V.; Hammel, M.; Vignal, E.; Vidal-Dupiol, J.; Mitta, G.; Thomas, F.; Bierne, N.; Destoumieux-Garzón, D.; Charrière, G. M.;
doi: 10.6084/m9.figshare.24278401 , 10.6084/m9.figshare.24278401.v1
doi: 10.6084/m9.figshare.24278401 , 10.6084/m9.figshare.24278401.v1
Figure S7: RDA on normalized read counts to analyze the impact of explanatory variables (“cell type”: hemocyte/MtrBTN2 cells, species: trossulus/edulis, “environment”: Barents Sea/Channel Sea) on response variables (gene expression) followed by ANOVA like permutation test (nperm=999, model=“full”). Both “cell type” and “environment” were retained as significant explanatory variables (p<0.05).
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Figure S6.jpeg from Transcriptomics of mussel transmissible cancer MtrBTN2 suggests accumulation of multiple cancer traits and oncogenic pathways shared among bilaterians
Research datakeyboard_double_arrow_right Image 2023Publisher:The Royal SocietyFunded by:INCa
INCa
Authors: Burioli, E. A. V.; Hammel, M.; Vignal, E.; Vidal-Dupiol, J.; +5 Authors
Burioli, E. A. V.; Hammel, M.; Vignal, E.; Vidal-Dupiol, J.; Mitta, G.; Thomas, F.; Bierne, N.; Destoumieux-Garzón, D.; Charrière, G. M.;
doi: 10.6084/m9.figshare.24278377.v1 , 10.6084/m9.figshare.24278377
doi: 10.6084/m9.figshare.24278377.v1 , 10.6084/m9.figshare.24278377
Figure S6: Top-expressed transcripts of genes in whole flesh of MtrBTN2-affected additional samples (CAN 4–6).
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Table S4.xlsx from Transcriptomics of mussel transmissible cancer MtrBTN2 suggests accumulation of multiple cancer traits and oncogenic pathways shared among bilaterians
Research datakeyboard_double_arrow_right Dataset 2023Publisher:The Royal SocietyFunded by:INCa
INCa
Authors: Burioli, E. A. V.; Hammel, M.; Vignal, E.; Vidal-Dupiol, J.; +5 Authors
Burioli, E. A. V.; Hammel, M.; Vignal, E.; Vidal-Dupiol, J.; Mitta, G.; Thomas, F.; Bierne, N.; Destoumieux-Garzón, D.; Charrière, G. M.;
doi: 10.6084/m9.figshare.24278410 , 10.6084/m9.figshare.24278410.v1
doi: 10.6084/m9.figshare.24278410 , 10.6084/m9.figshare.24278410.v1
Table S4: List of the transcripts significantly differentially expressed with descriptions, Gene IDs, log2FC, mean normalised abundance, FDR, and QuantEval validation.
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Figure S3.jpg from Transcriptomics of mussel transmissible cancer MtrBTN2 suggests accumulation of multiple cancer traits and oncogenic pathways shared among bilaterians
Research datakeyboard_double_arrow_right Image 2023Publisher:The Royal SocietyFunded by:INCa
INCa
Authors: Burioli, E. A. V.; Hammel, M.; Vignal, E.; Vidal-Dupiol, J.; +5 Authors
Burioli, E. A. V.; Hammel, M.; Vignal, E.; Vidal-Dupiol, J.; Mitta, G.; Thomas, F.; Bierne, N.; Destoumieux-Garzón, D.; Charrière, G. M.;
doi: 10.6084/m9.figshare.24278407.v1 , 10.6084/m9.figshare.24278407
doi: 10.6084/m9.figshare.24278407.v1 , 10.6084/m9.figshare.24278407
Figure S3: Spearman's correlation between transcript and component (QuantEval) Log2FC. Orange points represent the 102 transcripts for which the significance of the differential expression obtained with DESeq2 v1.34 was not confirmed at the component level (FDR>0.05).
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Supplementary tables (Table S1-15) from Marine transmissible cancer navigates urbanized waters, threatening to spillover

Table S6.xlsx from Transcriptomics of mussel transmissible cancer MtrBTN2 suggests accumulation of multiple cancer traits and oncogenic pathways shared among bilaterians

Table S1.txt from Transcriptomics of mussel transmissible cancer MtrBTN2 suggests accumulation of multiple cancer traits and oncogenic pathways shared among bilaterians

Figure S1.jpg from Transcriptomics of mussel transmissible cancer MtrBTN2 suggests accumulation of multiple cancer traits and oncogenic pathways shared among bilaterians

Table S8.xlsx from Transcriptomics of mussel transmissible cancer MtrBTN2 suggests accumulation of multiple cancer traits and oncogenic pathways shared among bilaterians

Table S3.xlsx from Transcriptomics of mussel transmissible cancer MtrBTN2 suggests accumulation of multiple cancer traits and oncogenic pathways shared among bilaterians

Figure S7.tif from Transcriptomics of mussel transmissible cancer MtrBTN2 suggests accumulation of multiple cancer traits and oncogenic pathways shared among bilaterians

Figure S6.jpeg from Transcriptomics of mussel transmissible cancer MtrBTN2 suggests accumulation of multiple cancer traits and oncogenic pathways shared among bilaterians

Table S4.xlsx from Transcriptomics of mussel transmissible cancer MtrBTN2 suggests accumulation of multiple cancer traits and oncogenic pathways shared among bilaterians

Figure S3.jpg from Transcriptomics of mussel transmissible cancer MtrBTN2 suggests accumulation of multiple cancer traits and oncogenic pathways shared among bilaterians

Supplementary tables (Table S1-15) from Marine transmissible cancer navigates urbanized waters, threatening to spillover

Table S6.xlsx from Transcriptomics of mussel transmissible cancer MtrBTN2 suggests accumulation of multiple cancer traits and oncogenic pathways shared among bilaterians

Table S1.txt from Transcriptomics of mussel transmissible cancer MtrBTN2 suggests accumulation of multiple cancer traits and oncogenic pathways shared among bilaterians

Figure S1.jpg from Transcriptomics of mussel transmissible cancer MtrBTN2 suggests accumulation of multiple cancer traits and oncogenic pathways shared among bilaterians

Table S8.xlsx from Transcriptomics of mussel transmissible cancer MtrBTN2 suggests accumulation of multiple cancer traits and oncogenic pathways shared among bilaterians

Table S3.xlsx from Transcriptomics of mussel transmissible cancer MtrBTN2 suggests accumulation of multiple cancer traits and oncogenic pathways shared among bilaterians

Figure S7.tif from Transcriptomics of mussel transmissible cancer MtrBTN2 suggests accumulation of multiple cancer traits and oncogenic pathways shared among bilaterians

Figure S6.jpeg from Transcriptomics of mussel transmissible cancer MtrBTN2 suggests accumulation of multiple cancer traits and oncogenic pathways shared among bilaterians

Table S4.xlsx from Transcriptomics of mussel transmissible cancer MtrBTN2 suggests accumulation of multiple cancer traits and oncogenic pathways shared among bilaterians

Figure S3.jpg from Transcriptomics of mussel transmissible cancer MtrBTN2 suggests accumulation of multiple cancer traits and oncogenic pathways shared among bilaterians

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