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Ocean acidification (OA) has been identified as one of the major climate-change related threats, mainly due to its significant impacts on marine calcifiers. Among those are the calcareous green algae of the genus Halimeda that are known to be major carbonate producers in shallow tropical and subtropical seas. Hence, any negative OA impacts on these organisms may translate into significant declines in regional and global carbonate production. In this study, we compiled the available information regarding Halimeda spp. responses to OA (experimental, in situ), with special focus on the calcification responses, one of the most studied response parameters in this group. Furthermore, among the compiled studies (n = 31), we selected those reporting quantitative data of OA effects on algal net calcification in an attempt to identify potential general patterns of species- and/or regional-specific OA responses and hence, impacts on carbonate production. While obtaining general patterns was largely hampered by the often scarce number of studies on individual species and/or regions, the currently available information indicates species-specific susceptibility to OA, seemingly unrelated to evolutionary lineages (and associated differences in morphology), that is often accompanied by differences in a species� response across different regions. Thus, for projections of future declines in Halimeda-associated carbonate production, we used available regional reports of species-specific carbonate production in conjunction with experimental OA responses for the respective species and regions. Based on the available information, declines can be expected worldwide, though some regions harbouring more sensitive species might be more impacted than others.

Geological histories of volcanic ocean islands can be revealed by the sediments shed by them. Hence there is an interest in studying cores of volcaniclastic sediments that are particularly preserved in the many flat-floored basins lying close to the Azores islands. We analyse four gravity cores collected around the central group of the islands. Three sedimentary facies (F1-F2a, F2b) are recognized based on visual core logging, particle morphometric and geochemical analyses. F1 is clay-rich hemipelagite comprising homogeneous mud with mottled structures from bioturbation. F2a and F2b are both clay-poor volcaniclastic deposits, which are carbonate-rich and carbonate-poor, respectively. More biogenic carbonate in F2a reflects the incorporation of unconsolidated calcareous material from island shelves or bioturbation. Within F2a and F2b we identify deposits emplaced by pyroclastic fallout, primary or secondary turbidity currents by combining multiple information from lithological composition, sedimentary structures, chemical composition of volcanic glass shards and morphometric characteristics of volcanic particles. Primary volcaniclastic sediments were found in all four cores, echoing activity known to have occurred up to historical times on the adjacent islands. These preliminary results suggest that greater details of geological events could be inferred for other volcanic islands by adopting a similar approach to core analysis.

This review focuses on the recognition of volcanic ash occurrences in marine sediment cores and on using their appearance and properties to deduce their origin. Widespread marine tephra layers are important marker horizons for both volcanological as well as general geological investigations. We describe ash detection by visual inspection and logging of sediment cores. Ash layer structure and texture, particle morphologies and lithological compositions of primary volcanic deposits are summarized and processes modifying them are discussed, both natural processes acting on and in the seafloor, i.e. erosion and bioturbation, and anthropogenic modifications during drilling/coring and core preparation. We discuss primary emplacement processes of marine fall and flow tephra deposits derived from either subaerial or submarine sources in order to identify distinguishing properties. We also elaborate on processes generating secondary, resedimented volcaniclastic layers such as submarine landslides and shelf erosion as well as fluvial input and ice-rafting, and how they can be distinguished from primary volcaniclastic deposits, which is essential in tephrostratigraphy. Finally, methods of tephra correlation between cores and on-land deposits/volcanoes are illustrated because they allow us to extend the 1D information from single cores to 3D distribution and facies changes of tephras and to bridge the land–sea gap.

Europe has experienced a substantial increase in non-indigenous crayfish species (NICS) since the mid-20th century due to their extensive use in fisheries, aquaculture and, more recently, pet trade. Despite relatively long invasion histories of some NICS and negative impacts on biodiversity and ecosystem functioning, large spatio-temporal analyses of their occurrences are lacking. Here, we used a large freshwater macroinvertebrate database to evaluate what information on NICS can be obtained from widely applied biomonitoring approaches and how usable such data is for descriptions of trends in identified NICS species. We found 160 time-series containing NICS between 1983 and 2019, to infer temporal patterns and environmental drivers of species and region-specific trends. Using a combination of meta-regression and generalized linear models, we found no significant temporal trend for the abundance of any species (Procambarus clarkii, Pacifastacus leniusculus or Faxonius limosus) at the European scale, but identified species-specific predictors of abundances. While analysis of the spatial range expansion of NICS was positive (i.e. increasing spread) in England and negative (significant retreat) in northern Spain, no trend was detected in Hungary and the Dutch-German-Luxembourg region. The average invasion velocity varied among countries, ranging from 30 km/year in England to 90 km/year in Hungary. The average invasion velocity gradually decreased over time in the long term, with declines being fastest in the Dutch-German-Luxembourg region, and much slower in England. Considering that NICS pose a substantial threat to aquatic biodiversity across Europe, our study highlights the utility and importance of collecting high resolution (i.e. annual) biomonitoring data using a sampling protocol that is able to estimate crayfish abundance, enabling a more profound understanding of NICS impacts on biodiversity.

The Carpathian-Pannonian Region (CPR) hosted some of the largest silicic volcanic eruptions in Europe during the Early and Middle Miocene, contemporaneously with major lithospheric thinning of the Pannonian Basin. This was recorded as an ignimbrite flare-up event from approximately 18.1–14.4 Ma. To gain in-depth perspectives on the eruption chronology, tephrostratigraphy, and petrogenesis at the onset of CPR silicic volcanism, we applied a multi-proxy approach to Lower Miocene rhyolitic ignimbrites and pyroclastic fall deposits from the northern CPR to the Dinaride Lake System. High-precision zircon U-Pb geochronology distinguished two Lower Miocene groups of volcaniclastic rocks at ∼ 18.1 Ma and ∼ 17.3 Ma. Based on combined tephrostratigraphic signatures we propose that the ∼ 18.1 Ma Kalnik and ∼ 17.3 Ma Eger eruptions produced widespread (intermediate to) large caldera-forming massive rhyolitic ignimbrites, deposited across northern and southwestern regions of the CPR. Due to easterly winds that carried volcanic ash hundreds of kilometers to the southwest, Eger eruption products also reached distal intra-montane Dinaride lacustrine basins, recorded as pyroclastic fall deposits. Heterogeneous major and trace elemental compositions of ∼ 18.1 Ma volcanic glass shards suggest that the Kalnik eruption was sourced from complex silicic magmatic systems, with simultaneous tapping of two discrete melt bodies during the eruption. The homogeneous geochemical composition of ∼ 17.3 Ma glasses is distinct from the older glasses. Integrated zircon and bulk glass Nd-Hf isotope compositions have a positive correlation, defining a regional mantle array, and are more radiogenic in the younger phase of volcanism. The recorded systematic isotopic change, moving from older more crustal signatures to younger more juvenile compositions, imply that during the period of lithospheric thinning of the Pannonian Basin the region underwent more complex variations in the interaction between metasomatized lithospheric mantle-derived magmas and various crustal components than previously recognized.

Harmful marine bacteria, such as Vibrio or Aeromonas species, typically exist at low abundance in ocean environments but represent a reservoir from which epidemics can arise. Particularly, Vibrio strains and their associated infections are on the rise globally due to increasing sea surface temperature representing an emergent threat for human and animal health also being responsible for large economic losses in the aquaculture industry worldwide. New technological approaches are needed to improve strategies targeting these pathogens. This review discusses new approaches based on improved sampling strategies and novel analytical methods offering increased accuracy, high throughput, and informativeness to study and detect microbial pathogens in the marine environment. Detecting and characterizing ultra-low-abundance pathogenic strains can serve as a critical tool in risk management and outbreak prevention of diseases caused by emerging marine pathogens.

In our previous study, a β-N-acetylhexosaminidase (HaHex74) from Haloferula sp. showing high human milk oligosaccharides (HMOs) synthesis ability was identified and characterized. In this study, HaHex74 was further engineered by directed evolution and site-saturation mutagenesis to improve its transglycosylation activity for HMOs synthesis. A mutant (mHaHex74) with improved transglycosylation activity (HaHex74-Asn401Ile/His394Leu) was obtained and characterized. mHaHex74 exhibited maximal activity at pH 5.5 and 35 °C, respectively, which were distinct from that of HaHex74 (pH 6.5 and 45 °C). Moreover, mHaHex74 showed the highest LNT2 conversion ratio of 28.2% from N,N’-diacetyl chitobiose (GlcNAc2), which is 2.2 folds higher than that of HaHex74. A three-enzyme cascade reaction for the synthesis of LNT2 and LNnT from chitin was performed in a 5–L reactor, and the contents of LNT2 and LNnT reached up to 15.0 g Lsingle bond1 and 4.9 g Lsingle bond1, respectively. Therefore, mHaHex74 maybe a good candidate for enzymatic synthesis of HMOs.

Highlights: • First eddy–mean flow interaction analysis in the Deep Western Boundary Current between 5°S and 16°S. • Eddy kinetic energy is mainly generated via barotropic instability. • Enhanced upstream mean flow induces intensification in the downstream eddy field. Abstract: Thirty-six years output of a 1/10° eddy-resolving Ocean General Circulation Model are used to analyze the energetics of eddy–mean flow interactions in the Deep Western Boundary Current (DWBC) region of the tropical South Atlantic between 5°S and 16°S. The DWBC flow has a coherent structure between 5°S and 8°S but breaks up into a train of eddies downstream of a region of strong bathymetric curvature at 8°S. In the train of eddies area, the seasonal cycle of eddy kinetic energy (EKE) exhibits poleward phase propagation from May to September. The connection between the seasonal cycle of mean kinetic energy and EKE indicates an intensification of the downstream eddy field associated with enhanced upstream mean flow. The magnitudes of the baroclinic conversion and vertical eddy density flux terms are small in the DWBC core layer depth but somewhat elevated 500 m above and below the core. Eddy processes, including eddy generation and propagation, are accompanied by high EKE and large barotropic conversion. While in the global ocean baroclinic conversion is thought to dominate the energy transfer to EKE, our results suggest that barotropic energy conversion is the primary source of EKE and modulates its variability in the DWBC region of the deeper ocean.

Alteration of volcanogenic aluminosilicates (VAs) in marine sediments is recognized as critical in regulating geochemical cycles and sustaining the oceanic deep biosphere, but rates of VA alteration and its associated authigenic mineral formation are not commonly reported. Here we present results on analyses of sediments and pore water recovered from the upper 150 mbsf of four sites drilled on the northern Hikurangi margin during IODP Expeditions 372 and 375. Petrographic analyses show that volcanogenic materials (glass shards, feldspar, volcanic lithoclasts) constitute important components (15–45 wt%) of the hemipelagic mud, and reveal ongoing glass alteration with accompanying authigenic phase formation. A reaction-transport model constrained by pore water Sr, 87Sr/86Sr, Ca, Mg, and Si was applied to simulate VA diagenetic reactions. Our model results yield VA alteration rates of 0.047–0.64 mmol Sr m−2 yr−1, with substantially higher values at Sites U1517 and U1520 that experienced rapid sediment emplacement. In addition, our simulations show that >99% of the dissolved Si generated by VA alteration is fixed in silica cement and authigenic clay, and that ∼50% of Ca incorporated in the authigenic carbonate is supplied by VA alteration. First-order estimates suggest that, in addition to authigenic carbonate precipitation, authigenic clay formation may represent an important sink for dissolved Mg. This study quantitatively examines the linkage between VA alteration and formation of authigenic phases, highlights its role in subsurface geochemical cycles, and indicates that slope instability may play an important role in promoting VA diagenesis.

Highlights • Zinc and copper isotope characterization of metalliferous sediments formed by brine pool deposition in the Atlantis II Deep. • Enrichments of light zinc and copper isotopes in sediments when compared to the hydrothermal inputs to the basin. • Isotopic data are consistent with metal sulfide precipitation and lesser adsorption of metals onto Si-Fe-OOH particles. • Increase of δ66Zn with increasing distance from hydrothermal metal release due to uptake of light isotopes by metal sulfides. • Zinc isotope patterns due to metal sulfide precipitation could be of interest in mineral exploration. Abstract This study provides a zinc and copper stable isotope characterization (δ66Zn, δ68Zn, and δ65Cu) of metalliferous seafloor sediments from the Atlantis II Deep, a hydrothermally influenced brine basin in the Red Sea. Samples collected from box cores that capture the entire stratigraphy in the Deep have δ66Zn and δ65Cu values of −0.31 to 0.34 ‰ (0.02 ‰ median) and − 1.81 to 1.02 ‰ (−0.34 ‰ median) relative to the JMC-Lyon and NIST SRM 976 standards, respectively. These results suggest enrichments of light stable isotopes in sediments compared to the hydrothermal inputs to the basin, which likely overlap the mantle-like isotopic signatures of basalts beneath the Deep. Such shifts to lower δ66Zn and δ65Cu values are consistent with widespread metal sulfide deposition from the brines because sulfide anions preferentially consume the light stable isotopes of zinc and copper. However, this interpretation contrasts with observations in the open ocean, where the fractionation of zinc and copper stable isotopes is strongly influenced by biological utilization and organic matter. Previous studies proposed that metal deposition in the Atlantis II Deep is also driven by adsorption onto iron oxides/hydroxides and their weakly crystalline (Si-)Fe-OOH precursor phases within the brines. However, because this process should accumulate heavy zinc and copper stable isotopes, its influence on isotopic fractionation is likely limited. Controls by metal sulfide precipitation are also indicated by spatial covariations between δ66Zn and concentrations of zinc and copper, that is, δ66Zn values increase whereas metal contents decrease with distance away from hydrothermal venting. Comparable trends are lacking for copper isotopes, perhaps because of additional influence by redox processes or, compared to zinc, a much stronger influence by adsorption onto (Si-)Fe-OOH phases, particularly in areas distal to hydrothermal venting where reduced sulfur could be scarce. Collectively, our results from the Atlantis II Deep indicate that zinc and copper stable isotopes could provide information about base and precious metals deposits from similar paleoenvironments. Firstly, zinc and copper stable isotopes shed light on metal sourcing and accumulation processes. Secondly, mineral precipitation in hydrothermally influenced brine pools produces zinc stable isotope patterns that, at least theoretically, could be of interest in mineral exploration at sub-basin and deposit scales.