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295 research outcomes, page 1 of 30
  • publication . 2022
    English
    Authors:
    Lemane, Téo; Medvedev, Paul; Chikhi, Rayan; Peterlongo, Pierre;
    Publisher: HAL CCSD
    Country: France
    Project: TARA | Tara Oceans (2), ANR | PRAIRIE (ANR-19-P3IA-0001), ANR | INCEPTION (ANR-16-CONV-0005), ANR | SeqDigger (ANR-19-CE45-0008)

    International audience; When indexing large collections of short-read sequencing data, a common operation that has now been implemented in several tools (Sequence Bloom Trees and variants, BIGSI,.) is to construct a collection of Bloom filters, one per sample. Each Bloo...

  • publication . Preprint . 2021
    Open Access English
    Authors:
    Paul Frémont; Marion Gehlen; Mathieu Vrac; Jade Leconte; Tom O. Delmont; Patrick Wincker; Daniele Iudicone; Olivier Jaillon;
    Persistent Identifiers
    Publisher: HAL CCSD
    Country: France
    Project: TARA | Tara Oceans (2)

    AbstractThe impact of climate change on diversity, functioning and biogeography of marine plankton remains a major unresolved issue. Here, niche theory is applied to plankton metagenomes of 6 size fractions, from viruses to meso-zooplankton, sampled during the Tara Ocea...

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  • publication . Preprint . Article . 2021
    Open Access English
    Authors:
    Hiroto Kaneko; Romain Blanc-Mathieu; Hisashi Endo; Samuel Chaffron; Tom O. Delmont; Morgan Gaia; Nicolas Henry; Rodrigo Hernández-Velázquez; Canh Hao Nguyen; Hiroshi Mamitsuka; ...
    Publisher: Elsevier BV
    Country: France
    Project: TARA | Tara Oceans (2), ANR | OCEANOMICS (ANR-11-BTBR-0008)

    Summary The biological carbon pump, in which carbon fixed by photosynthesis is exported to the deep ocean through sinking, is a major process in Earth's carbon cycle. The proportion of primary production that is exported is termed the carbon export efficiency (CEE). Bas...

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  • publication . Preprint . 2021
    Open Access English
    Authors:
    Samuel Chaffron; Erwan Delage; Marko Budinich; Damien Vintache; Nelly Henry; Charlotte Nef; Mathieu Ardyna; Ahmed A. Zayed; Pedro C. Junger; Pierre E. Galand; ...
    Persistent Identifiers
    Publisher: HAL CCSD
    Country: France
    Project: EC | DIATOMIC (835067), ANR | Amidex (ANR-11-IDEX-0001), ANR | OCEANOMICS (ANR-11-BTBR-0008), TARA | Tara Oceans (2), EC | AtlantECO (862923)

    AbstractMarine plankton form complex communities of interacting organisms at the base of the food web, which sustain oceanic biogeochemical cycles, and help regulate climate. Though global surveys are starting to reveal ecological drivers underlying planktonic community...

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  • publication . Article . 2021
    Open Access English
    Authors:
    Cheng, Jingguang; Jacquin, Justine; Conan, Pascal; Pujo-Pay, Mireille; Barbe, Valérie; George, Matthieu; Fabre, Pascale; Bruzaud, Stephane; Ter Halle, Alexandra; Meistertzheim, Anne-Leila; ...
    Persistent Identifiers
    Publisher: HAL CCSD
    Country: France
    Project: TARA | Tara Oceans (2)

    International audience; The thin film of life that inhabits all plastics in the oceans, so-called “plastisphere,” has multiple effects on the fate and impacts of plastic in the marine environment. Here, we aimed to evaluate the relative influence of the plastic size, sh...

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  • publication . Preprint . Article . Other literature type . 2020
    Open Access English
    Authors:
    Ramiro Logares; Ina M. Deutschmann; Pedro C. Junger; Caterina R. Giner; Anders K. Krabberød; Thomas Schmidt; Laura Rubinat-Ripoll; Mireia Mestre; Guillem Salazar; Clara Ruiz-González; ...
    Publisher: BioMed Central
    Countries: France, Spain, Switzerland
    Project: TARA | Tara Oceans (2), EC | SINGEK (675752)

    Background: The ocean microbiota modulates global biogeochemical cycles and changes in its configuration may have large-scale consequences. Yet, the underlying ecological mechanisms structuring it are unclear. Here, we investigate how fundamental ecological mechanisms (...

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  • publication . Article . 2020
    Open Access English
    Authors:
    Alicia S. Arroyo; Romain Iannes; Eric Bapteste; Iñaki Ruiz-Trillo;
    Persistent Identifiers
    Publisher: Oxford University Press
    Countries: France, Spain
    Project: TARA | Tara Oceans (2)

    The Holozoa clade comprises animals and several unicellular lineages (choanoflagellates, filastereans, and teretosporeans). Understanding their full diversity is essential to address the origins of animals and other evolutionary questions. However, they are poorly known...

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  • publication . Article . 2020
    Open Access English
    Authors:
    Greta Busseni; Luigi Caputi; Roberta Piredda; Paul Frémont; Bruno Hay Mele; Lucia Campese; Eleonora Scalco; Colomban de Vargas; Chris Bowler; Francesco d'Ovidio; ...
    Persistent Identifiers
    Publisher: HAL CCSD
    Country: France
    Project: TARA | Tara Oceans (2), EC | EMBRIC (654008)

    International audience

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  • publication . Article . 2020
    Open Access English
    Authors:
    Carradec, Quentin; Poulain, Julie; Boissin, Emilie; Hume, Benjamin; Voolstra, Christian; Ziegler, Maren; Engelen, Stefan; Cruaud, Corinne; Planes, Serge; Wincker, Patrick;
    Persistent Identifiers
    Publisher: HAL CCSD
    Countries: France, Germany
    Project: TARA | Tara Pacific (4)

    International audience; Abstract Molecular characterization of the coral host and the microbial assemblages associated with it (referred to as the coral holobiont) is currently undertaken via marker gene sequencing. This requires bulky instruments and controlled laborat...

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  • publication . Preprint . 2020
    Open Access English
    Authors:
    Marta Royo-Llonch; Pablo Sánchez; Clara Ruiz-González; Guillem Salazar; Carlos Pedrós-Alió; Karine Labadie; Lucas Paoli; Samuel Chaffron; Damien Eveillard; Eric Karsenti; ...
    Persistent Identifiers
    Publisher: HAL CCSD
    Country: France
    Project: TARA | Tara Oceans (2), ANR | Amidex (ANR-11-IDEX-0001), ANR | OCEANOMICS (ANR-11-BTBR-0008)

    The Arctic Ocean is a key player in the regulation of climate and at the same time is under increasing pressure as a result of climate change. Predicting the future of this ecosystem requires understanding of the responses of Arctic microorganisms to environmental chang...

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295 research outcomes, page 1 of 30