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Abstract Pakistan is an agricultural country and fisheries play a very important role in the economic development of the country. Different diseases are prevalent in Pakistani fish but information related to the causative agents is not well-known. Keeping in view the significance of bacterial pathogens as the causative agents of multiple fish diseases, the present study was conducted for identification, characterization and analysis of virulence genes of Aeromonas spp. isolated from diseased fishes. A total of fifty fish samples having multiple clinical indications were collected from different fish farms of district Kasur, Punjab Pakistan. For isolation of Aeromonas spp. samples were enriched and inoculated on Aeromonas isolation medium. Isolates were identified and characterized by different biochemical tests, Analytical Profile Index (API) 20E kit and Polymerase Chain Reaction (PCR) assays. All isolates were screened for three putative virulence genes including aerolysin (aer), haemolysin (hyl) and heat labile cytotonic enterotoxin (alt). Seven isolates of Aeromonas (A.) hydrophila were retrieved and identified based on API 20E. These isolates were further confirmed as A. hydrophila on the basis of PCR assays. Three isolates were detected positive for the presence of virulence genes (alt and hyl). Whereas aerolysin (aer) gene was not present in any of A. hydrophila isolates. The present study confirmed A. hydrophila as the causative agent of epizootic ulcerative syndrome and motile Aeromonas septicemia in fish farms of district Kasur, Punjab Pakistan. Moreover, detection of two virulence genes (alt and hyl) in A. hydrophila isolates is a threat for fish consumers of study area. Resumo O Paquistão é um país agrícola, onde a pesca desempenha um papel muito importante para o desenvolvimento econômico. Diferentes doenças são prevalentes em peixes do Paquistão, mas as informações relacionadas aos agentes causadores não são bem conhecidas. Tendo em vista a importância dos patógenos bacterianos como agentes causadores de múltiplas doenças em peixes, o presente estudo foi conduzido para identificação, caracterização e análise de genes de virulência de isolados de Aeromonas spp. de peixes doentes. Foram coletadas 50 amostras de peixes com múltiplas indicações clínicas em diferentes fazendas do distrito de Kasur, Punjab, Paquistão. Para isolar Aeromonas spp., as amostras foram enriquecidas e inoculadas em meio de isolamento. Os isolados foram identificados e caracterizados por diferentes testes bioquímicos, kit Analytical Profile Index (API) 20E, e ensaios de reação em cadeia da polimerase (PCR). Todos os isolados foram selecionados para três genes de virulência putativos, incluindo aerolisina (aer), hemolisina (hyl) e enterotoxina citotônica termolábil (alt). Sete isolados de Aeromonas hydrophila foram recuperados e identificados com base no API 20E. Esses isolados foram posteriormente confirmados como A. hydrophila de acordo com ensaios de PCR. Três isolados indicaram a presença de genes de virulência (alt e hyl), enquanto o gene aerolisina (aer) não esteve presente em nenhum dos isolados de A. hydrophila. O presente estudo confirmou A. hydrophila como o agente causador da síndrome ulcerativa epizoótica e septicemia móvel por Aeromonas em fazendas de peixes, no distrito de Kasur, Punjab, Paquistão. Além disso, a detecção de dois genes de virulência (alt e hyl) em isolados de A. hydrophila é uma ameaça para os consumidores de peixes da área de estudo.

Coastal nature-based solutions (NbS) are increasingly recognized for their multiple benefits to socio-ecological systems, including climate mitigation and adaptation (e.g. conservation, restoration and sustainable management of coastal ecosystems for climate). National climate plans, such as the Nationally Determined Contributions (NDCs) developed under the Paris Agreement, include coastal NbS as a practical and effective action to help countries achieve their climate and biodiversity targets. However, the absence of a standardized NDC structure and the lack of guidance about how NbS should be included in NDCs can hinder access to external funding for developing countries and prevent transparent reporting on progress at the international level. In this context, our aim is to understand how coastal NbS are currently included in NDCs by evaluating their alignment with the IUCN Global Standard for NbS. Our analysis focuses on the description of coastal NbS in the NDCs of Pacific Small Island Developing States (PSIDS), as they are among the most vulnerable countries to the impacts of climate change. Overall, we find that, for the 22 coastal NbS examined in the NDCs of PSIDS, the degree of alignment with the eight criteria of the IUCN Global Standard is insufficient or partial, with slightly better alignment with the standard in revised NDCs than in original NDCs. We discuss opportunities provided by the standardization of the description of coastal NbS in NDCs, in terms of access to funding and stock taking to monitor the effectiveness of implementation and progress towards long-term goals. We also discuss the relevance of using the IUCN Global Standard for reporting on NbS in NDCs for PSIDS.

Ocean acidification (OA) has been identified as one of the major climate-change related threats, mainly due to its significant impacts on marine calcifiers. Among those are the calcareous green algae of the genus Halimeda that are known to be major carbonate producers in shallow tropical and subtropical seas. Hence, any negative OA impacts on these organisms may translate into significant declines in regional and global carbonate production. In this study, we compiled the available information regarding Halimeda spp. responses to OA (experimental, in situ), with special focus on the calcification responses, one of the most studied response parameters in this group. Furthermore, among the compiled studies (n = 31), we selected those reporting quantitative data of OA effects on algal net calcification in an attempt to identify potential general patterns of species- and/or regional-specific OA responses and hence, impacts on carbonate production. While obtaining general patterns was largely hampered by the often scarce number of studies on individual species and/or regions, the currently available information indicates species-specific susceptibility to OA, seemingly unrelated to evolutionary lineages (and associated differences in morphology), that is often accompanied by differences in a species� response across different regions. Thus, for projections of future declines in Halimeda-associated carbonate production, we used available regional reports of species-specific carbonate production in conjunction with experimental OA responses for the respective species and regions. Based on the available information, declines can be expected worldwide, though some regions harbouring more sensitive species might be more impacted than others.

Despite the importance of marine megafauna on ecosystem functioning, their contribution to the oceanic carbon cycle is still poorly known. Here, we explored the role of baleen whales in the biological carbon pump across the southern hemisphere based on the historical and forecasted abundance of five baleen whale species. We modelled whale-mediated carbon sequestration through the sinking of their carcasses after natural death. We provide the first temporal dynamics of this carbon pump from 1890 to 2100, considering both the effects of exploitation and climate change on whale populations. We reveal that at their pre-exploitation abundance, the five species of southern whales could sequester 4.0 × 10 5 tonnes of carbon per year (tC yr −1 ). This estimate dropped to 0.6 × 10 5 tC yr −1 by 1972 following commercial whaling. However, with the projected restoration of whale populations under a RCP8.5 climate scenario, the sequestration would reach 1.7 × 10 5 tC yr −1 by 2100, while without climate change, recovered whale populations could sequester nearly twice as much (3.2 × 10 5 tC yr −1 ) by 2100. This highlights the persistence of whaling damages on whale populations and associated services as well as the predicted harmful impacts of climate change on whale ecosystem services.

Bolder individuals have greater access to food sources and reproductive partners but are also at increased risk of predation. Boldness is believed to be consistent across time and contexts, but few studies have investigated the stability of this trait across variable environments, such as varying stress loads or long periods of time. Moreover, the underlying molecular components of boldness are poorly studied. Here, we report that boldness of 1154 European sea bass, evaluated using group risk-taking tests, is consistent over seven months and for individuals subjected to multiple environments, including a chronically stressful environment. Differences in risk-taking behaviour were further supported by differences observed in the responses to a novel environment test: shy individuals displayed more group dispersion, more thigmotaxic behaviour and lower activity levels. Transcriptomic analyses performed on extreme phenotypes revealed that bold individuals display greater expression for genes involved in social and exploration behaviours, and memory in the pituitary, and genes involved in immunity and responses to stimuli in the head kidney. This study demonstrates that personality traits come with an underpinning molecular signature, especially in organs involved in the endocrine and immune systems. As such, our results help to depict state–behaviour feedback mechanisms, previously proposed as key in shaping animal personality.

This review focuses on the recognition of volcanic ash occurrences in marine sediment cores and on using their appearance and properties to deduce their origin. Widespread marine tephra layers are important marker horizons for both volcanological as well as general geological investigations. We describe ash detection by visual inspection and logging of sediment cores. Ash layer structure and texture, particle morphologies and lithological compositions of primary volcanic deposits are summarized and processes modifying them are discussed, both natural processes acting on and in the seafloor, i.e. erosion and bioturbation, and anthropogenic modifications during drilling/coring and core preparation. We discuss primary emplacement processes of marine fall and flow tephra deposits derived from either subaerial or submarine sources in order to identify distinguishing properties. We also elaborate on processes generating secondary, resedimented volcaniclastic layers such as submarine landslides and shelf erosion as well as fluvial input and ice-rafting, and how they can be distinguished from primary volcaniclastic deposits, which is essential in tephrostratigraphy. Finally, methods of tephra correlation between cores and on-land deposits/volcanoes are illustrated because they allow us to extend the 1D information from single cores to 3D distribution and facies changes of tephras and to bridge the land–sea gap.

Sea ice decline in the North Atlantic and Nordic Seas has been proposed to contribute to the repeated abrupt atmospheric warmings recorded in Greenland ice cores during the last glacial period, known as Dansgaard-Oeschger (D-O) events. However, the understanding of how sea ice changes were coupled with abrupt climate changes during D-O events has remained incomplete due to a lack of suitable high-resolution sea ice proxy records from northwestern North Atlantic regions. Here, we present a subdecadal-scale bromine enrichment (Br enr ) record from the NEEM ice core (Northwest Greenland) and sediment core biomarker records to reconstruct the variability of seasonal sea ice in the Baffin Bay and Labrador Sea over a suite of D-O events between 34 and 42 ka. Our results reveal repeated shifts between stable, multiyear sea ice (MYSI) conditions during cold stadials and unstable, seasonal sea ice conditions during warmer interstadials. The shift from stadial to interstadial sea ice conditions occurred rapidly and synchronously with the atmospheric warming over Greenland, while the amplitude of high-frequency sea ice fluctuations increased through interstadials. Our findings suggest that the rapid replacement of widespread MYSI with seasonal sea ice amplified the abrupt climate warming over the course of D-O events and highlight the role of feedbacks associated with late-interstadial seasonal sea ice expansion in driving the North Atlantic ocean–climate system back to stadial conditions.

Feed conversion ratio (FCR) is an important trait to target in fish breeding programs, and the aim of the present study is to underline how the genetic improvement of FCR in gilthead sea bream (Sparus aurata) drives to changes in transcriptional and behavioural patterns. Groups of fish with high (FCR+) and low (FCR-) individual FCR were established at the juvenile stage (161–315 dph) by rearing isolated fish on a restricted ration. Fish were then grouped on the basis of their individual FCR and they grew up until behavioural monitoring and gene expression analyses were done at 420 dph. The AEFishBIT datalogger (externally attached to operculum) was used for simultaneous measurements of physical activity and ventilation rates. This allowed discrimination of FCR+ and FCR- groups according to their different behaviour and energy partitioning for growth and locomotor activity. Gene expression profiling of liver and white muscle was made using customized PCR-arrays of 44 and 29 genes, respectively. Up to 15 genes were differentially expressed in liver and muscle tissues highlighting a different metabolic scope of FCR+ and FCR- fish. Hepatic gene expression profile of FCR- fish displayed a lower lipogenic activity that was concurrent with a down-regulation of markers of mitochondrial activity and oxidative stress, as well as a reallocation of body fat depots with an enhanced flux of lipids towards skeletal muscle. Muscle gene expression profile of FCR- fish matched with stimulatory and inhibitory growth signals, and an activation of energy sensors and antioxidant defence as part of the operating mechanisms for a more efficient muscle growth. These new insights contribute to phenotype the genetically mediated differences in fish FCR thanks to the combination of transcriptomic and behavioural approaches that contribute to better understand the mechanisms involved in a reliable FCR improvement of farmed gilthead sea bream.

Remote fish sizing is desirable in fisheries (e.g., pre-catch) and research (e.g., platforms without biological sampling capacity) applications. In those contexts, the high spatial resolution of pulse compressed broadband echoes combined with narrow beamwidth transducers makes it feasible to resolve the scattering from different parts of the fish body and hence can be used to measure the body size. A motorized apparatus was used to suspend individual fish in the acoustic beam of two laterally oriented transducers (45–90 kHz, 160–260 kHz, 12.2 m range) with precise control of rotation angle. Broadband scattering was measured from tethered Atlantic mackerel (Scomber scombrus), saithe (Pollachius virens), and pollack (Pollachius pollachius) ranging in standard length from 239 to 491 mm as a function of orientation angle to validate sizing based on the acoustic resolution of fish body parts. Under these controlled conditions, fish size was underestimated by 11–19 mm, varying with broadband pulse characteristics, orientation angle, species, and fish size. The best remote acoustic sizing results were obtained using 160–260 kHz pulses with a slow rise and fall of pulse amplitude (aka, taper).

Resumo O objetivo deste trabalho foi analisar os fatores determinantes do consumo domiciliar de pescados no Brasil. Foram utilizados os microdados da POF 2017-2018. Especificamente, buscou-se identificar como o consumo de pescados é influenciado pelas variáveis relacionadas à localização, características e hábitos domiciliares, de forma geral e por faixas de renda. Para a estimação, utilizou-se o modelo econométrico Probit. Ao todo, foram selecionados 2289 produtos distribuídos entre 9 categorias distintas, sendo 5 delas relacionadas a pescados e 4 relacionadas a proteínas elencadas como possíveis substitutas. Os resultados mostram que residir na zona rural, em regiões litorâneas ou na região Norte contribui positivamente para a aquisição de pescados, o que indica a importância dos fatores ligados à oferta. A escolaridade do responsável pelo domicílio não teve efeito significativo na propensão a consumir. Já a presença de crianças e adolescentes nos domicílios e o aumento da renda tiveram efeito positivo sobre a propensão a consumir. Abstract The objective of this work was to analyze the determinants of household consumption of fish in Brazil. Microdata from POF 2017-2018 were used. Specifically, we sought to identify how fish consumption is influenced by variables related to location and to household habits and characteristics, in general, and by income groups. For the estimation, the Probit econometric model was used. Altogether, 2289 products were selected and distributed among 9 different categories, 5 of them related to fish and 4 related to proteins listed as possible substitutes. The results show that living in the rural area, coastal regions, or in the North region contributes positively to the acquisition of fish, which indicates the importance of supply factors. The level of education of the person responsible for the household had no significant effect on the propensity to consume. The presence of children and adolescents in households and the increase in income positively affected the propensity to consume.