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  • Marine Micropaleontology

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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Onodera, Jonaotaro; Kemp, Alan E.S.; Pearce, Richard B.; Horikawa, Keiji; +1 Authors

    Laminated diatomaceous sediments occur intermittently in the Bering Sea over the past 5 million years. A varve (annually deposited) origin for the laminae has been suggested, but there is currently no consensus. Here, we report results of a study of two laminated intervals dating from ∼528 ka and ∼ 782 ka from IODP Site U1340 on the Bowers Ridge. We combine conventional micropaleontological methods with scanning electron microscope analysis that resolves the seasonal cycle of flux events recorded and demonstrates an annual origin for the laminae. Resting spores of Chaetoceros spp., and more rarely of Thalassiosira antarctica represent early spring blooms with the latter likely due to increased meltwater input. Diatom laminae containing concentrations of Shionodiscus trifultus, Thalassiosira spp., Actinocyclus curvulatus, and Neodenticula seminae, represent flux from the main spring-summer bloom episodes, with the latter indicating influx of seed populations from the North Pacific Alaskan Stream. Concentrations of Coscinodiscus spp. in the uppermost part of the diatom laminae represent “Fall Dump” sedimentation of these stratified-adapted diatoms in response to break down of summer stratification in autumn/early-winter storms. The lithogenic laminae represent mainly winter deposition and rare earth element analysis suggests provenance from the southern Bering Sea shelf and the Aleutian Arc. Productivity was high in the studied intervals with total mass fluxes around 5 times higher than modern values. Variation in lamina thickness and diatom composition contain periodicities of 2–8 years, as well as a bi-decadal variability likely related to influence of the Pacific Decadal Oscillation.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ e-Prints Sotonarrow_drop_down
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    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Marine Micropaleontology
    Article . 2024 . Peer-reviewed
    License: CC BY
    Data sources: Crossref
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ e-Prints Sotonarrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      Marine Micropaleontology
      Article . 2024 . Peer-reviewed
      License: CC BY
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Davies, Joanna; Lloyd, Jeremy; Pearce, Christof; Seidenkrantz, Marit-Solveig;

    Analysis of benthic foraminifera in surface samples from 23 sites on the Northeast Greenland continental shelf reveal key assemblage differences between sites. Cluster analysis creates two clear geographical faunal assemblage zones: the 1) inner shelf, and 2) mid and outer shelf sites. These assemblages differ significantly, with the inner shelf sites being characterised by a high percentage and concentration of calcareous species, whilst the mid and outer shelf sites are dominated by agglutinated taxa. At almost all sites, the calcareous assemblages are dominated by Cassidulina neoteretis and Cassidulina reniforme, suggesting that they thrive across the shelf. Stetsonia horvathi, Oridorsalis tener, as well as Glomulina oculus and other miliolid species are found to be key calcareous species at many sites in the inner shelf zone, but they are rare-to-absent on the mid and outer shelf. Canonical correspondence analysis shows that September sea-ice cover and bottom water oxygen content are positively correlated with benthic foraminiferal assemblages at inner shelf sites, whereas organic carbon content is correlated with those in the mid and outer shelf. The formation of seasonal sea-ice and the Northeast Water polynya rejects brine into surrounding waters and transports CO2 to the seafloor, creating a highly corrosive environment for calcium carbonate. These environments are also highly productive, as indicated by the high organic carbon content and low bottom water oxygen content. The oxidation of this organic material creates CO2. We propose that these processes are key drivers in the dissolution of calcareous tests. In contrast, extensive sea-ice, high bottom water oxygen content and low primary productivity in the glacier-proximal region facilitates carbonate preservation.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ PURE Aarhus Universi...arrow_drop_down
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    ZENODO; Marine Micropaleontology
    Article . 2023 . Peer-reviewed
    License: CC BY
    Data sources: ZENODO; Crossref
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ PURE Aarhus Universi...arrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      ZENODO; Marine Micropaleontology
      Article . 2023 . Peer-reviewed
      License: CC BY
      Data sources: ZENODO; Crossref
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  • image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    Authors: McCartney, Kevin; Chakraborty, Arindam; Ghosh, Amit K.; Soeding, Emanuel; +1 Authors

    Highlights: • Silicoflagellates more common and diverse in late Eocene, lower in Oligocene. • Record of new species Corbisema tajmahalii from Late Eocene, with interpreted double skeleton (DS). • First known Bachmannocena DS, has corner-aligned configuration. • Observation of early evolution of Stephanocha raupii, transferred to Distephanopsis. Abstract Study of the South Pacific Ocean sediments from IODP Expedition 378, Holes U1553A and U1553B, shows 19 late Eocene to late Oligocene silicoflagellate species. The late Eocene includes Corbisema tajmahalii n. sp., observed over a ∼ 8.4 m interval and proposed as a new subzone within the Corbisema apiculata Zone. The new species is characterized by the presence of basal ring that has three sides and an arrowhead-shaped outline with the two minor-axis corners more closely spaced. This study has found the first known Bachmannocena double skeleton, in corner-aligned configuration that suggests evolutionary relationship with the Corbisema triacantha group of Cenozoic silicoflagellates. Also observed is the apparent early evolution of Stephanocha raupii at ∼29.6 Ma, derived from a skeletal diversity related to Distephanopsis crux, thus the species is here transferred to Distephanopsis (abbreviated as Ds.). Silicoflagellate skeletal abundance declines after the Eocene-Oligocene boundary, with generally low abundance except for two sediment samples immediately below the Ds. raupii n. comb. first appearance.

    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao OceanRep; Marine Mic...arrow_drop_down
    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao OceanRep; Marine Mic...arrow_drop_down
      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Mertens, Kenneth; Morquecho, Lourdes; Carbonell-Moore, Consuelo; Meyvisch, Pjotr; +8 Authors

    A new Pentaplacodinium species with six precingular plates is described from Bahía Concepción and Bahía de la Paz, Gulf of California. The non-fossil motile stage is described as Pentaplacodinium lapazense, whilst the fossil stage is described as Operculodinium lapazense. The cyst morphology is compared to topotype material of Operculodinium israelianum, which is larger, has longer processes and has a different wall structure. The motile cells display a plate formula of Po, Pt, X, 2′ + *2′, 6′′, 6c, 7 s, 5′′′, 1p, 1′′′′. A typical gonyaulacalean fission line and plate overlap are observed. SSU-ITS-LSU ribosomal DNA sequences demonstrate that Pentaplacodinium saltonense is its closest relative. The species is homothallic. This species occurs in relatively shallow and restricted coastal areas, and has a preference for higher sea-surface temperatures and salinities. MicroFTIR spectra of the cysts are compared to spectra of cysts of other gonyaulacaleans and suggest very similar compositions. No yessotoxins were detected in any of the analyzed strains, hence, this species is unlikely to be responsible for the elevated yessotoxin concentration observed in shellfish on the southern and central coastal region of the Gulf of California.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ArchiMer - Instituti...arrow_drop_down
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    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    Marine Micropaleontology
    Article . 2023 . Peer-reviewed
    License: Elsevier TDM
    Data sources: Crossref
    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ArchiMer - Instituti...arrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
      Marine Micropaleontology
      Article . 2023 . Peer-reviewed
      License: Elsevier TDM
      Data sources: Crossref
      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Gurdebeke, Pieter R.; Mertens, Kenneth Neil; Rajter, Lubomir; Meyvisch, Pjotr; +5 Authors

    The acritarch genus Radiosperma has been reported from plankton and sediments since the late 19th century, with suggested biological affinities ranging from invertebrate eggs to tintinnids. Here, the genus description is improved and its two species, Radiosperma corbiferum and Radiosperma textum, are redescribed. Radiosperma textum is shown to be a ciliate cyst related to Askenasia based on new SSU and LSU rRNA sequences. The spatiotemporal distribution and ecology of both species are discussed. The chemical composition is documented based on micro-Fourier Transform Infrared spectroscopy. Furthermore, new SSU and LSU rRNA sequences for several flask shaped ciliate cysts (Fusopsis, Strombidium) are also included in the analysis and the occurrence of fossilizable cysts in the ciliophoran clade is reviewed.

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    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    Marine Micropaleontology
    Article . 2023 . Peer-reviewed
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ArchiMer - Instituti...arrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
      Marine Micropaleontology
      Article . 2023 . Peer-reviewed
      License: Elsevier TDM
      Data sources: Crossref
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    Authors: Èric Pairet; Juan David Hernandez; Marc Carreras; Yvan Petillot; +1 Authors

    Safe autonomous navigation is an essential and challenging problem for robots operating in highly unstructured or completely unknown environments. Under these conditions, not only robotic systems must deal with limited localization information but also their maneuverability is constrained by their dynamics and often suffers from uncertainty. In order to cope with these constraints, this article proposes an uncertainty-based framework for mapping and planning feasible motions online with probabilistic safety guarantees. The proposed approach deals with the motion, probabilistic safety, and online computation constraints by: 1) incrementally mapping the surroundings to build an uncertainty-aware representation of the environment and 2) iteratively (re)planning trajectories to goal that is kinodynamically feasible and probabilistically safe through a multilayered sampling-based planner in the belief space. In-depth empirical analyses illustrate some important properties of this approach, namely: 1) the multilayered planning strategy enables rapid exploration of the high-dimensional belief space while preserving asymptotic optimality and completeness guarantees and 2) the proposed routine for probabilistic collision checking results in tighter probability bounds in comparison to other uncertainty-aware planners in the literature. Furthermore, real-world in-water experimental evaluation on a nonholonomic torpedo-shaped autonomous underwater vehicle and simulated trials in an urban environment on an unmanned aerial vehicle demonstrate the efficacy of the method and its suitability for systems with limited onboard computational power. Note to Practitioners—Emergent robotic applications require operating in previously unmapped scenarios. This article presents a unified mapping–planning strategy that enables robots to navigate autonomously and safely in harsh environments This work was supported in part by the School of Engineering and Physical Sciences (EPS), Heriot-Watt University, as part of the Centre for Doctoral Training (CDT) in Robotics and Autonomous Systems (Heriot-Watt University and The University of Edinburgh); in part by the Scottish Informatics and Computer Science Alliance (SICSA), ORCA Hub EPSRC (EP/R026173/1), and consortium partners; and in part by the EXCELLABUST and ARCHROV projects under Grant H2020-TWINN2015, CSA, ID:691980 and Grant DPI2014-57746-C3-3-R, respectively, for conducting the experiments in Section VII-A at the Computer Vision and Robotics Institute (VICOROB), University of Girona

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    arXiv.org e-Print Archive
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    IEEE Transactions on Automation Science and Engineering
    Article . 2022 . Peer-reviewed
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    Article . 2020
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      arXiv.org e-Print Archive
      Other literature type . Preprint . 2020
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      IEEE Transactions on Automation Science and Engineering
      Article . 2022 . Peer-reviewed
      License: CC BY
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      https://doi.org/10.48550/arxiv...
      Article . 2020
      License: arXiv Non-Exclusive Distribution
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    Authors: Roylands, Tobias; Hilton, Robert G.; Garnett, Mark H.; Soulet, Guillaume; +3 Authors

    Weathering of organic carbon contained in sedimentary rocks (petrogenic OC, OCpetro) is an important control on the concentrations of carbon dioxide (CO2) and oxygen in the atmosphere. Of particular significance are steep mountainous catchments, where high rates of physical erosion introduce OCpetro to the surface, where oxygen in air and water can help drive oxidative weathering reactions, yet measurements of CO2 emissions from OCpetro oxidation are still scarce. Here, we use in situ gas accumulation chambers and show that CO2 fluxes, and their environmental controls, can be determined during a stand-alone, short-term (8 days) field campaign, applied to a remote setting. In the rapidly eroding Waiapu River catchment, New Zealand, dominated by mudstones, we measured high rates of CO2 release (222–1590 mgC m−2 d−1) in five accumulation chambers in the near-surface of naturally fractured and bedded rock outcrops. The corresponding CO2 concentrations are very high (pCO2 ~ 4700–27,100 ppmv), and such values could influence acid-hydrolysis reactions during chemical weathering of co-occurring silicate minerals. The CO2 is radiocarbon depleted (fraction modern, F14C = 0.0122–0.0547), confirming it is petrogenic in origin. Stable carbon isotopes suggest a source from OCpetro, but δ13C values of the CO2 are lower by ~3.5–3.7 ± 0.1 ‰ from those of OCpetro (−25.9 ± 0.1 ‰), consistent with isotope fractionation associated with microbial respiration of OCpetro. Over 6 days of measurement, we find that CO2 fluxes respond quickly to changes in temperature and humidity, indicating an environmental regulation that is captured by our short-term installation. The approaches applied here mean that future research can now seek to constrain the climatic, lithological and biological controls on OCpetro oxidation across regional to global scales.

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    Authors: S.E. Rannala; A. Meo; S. Ruta; W. Pantasri; +3 Authors

    Micromagnetic modelling provides the ability to simulate large magnetic systems accurately without the computational cost limitation imposed by atomistic modelling. Through micromagnetic modelling it is possible to simulate systems consisting of thousands of grains over a time range of nanoseconds to years, depending upon the solver used. Here we present the creation and release of an open-source multi-timescale micromagnetic code combining three key solvers: Landau-Lifshitz-Gilbert; Landau-Lifshitz-Bloch; Kinetic Monte Carlo. This code, called MARS (Models of Advanced Recording Systems), is capable of accurately simulating the magnetisation dynamics in large and structurally complex single- and multi-layered granular systems. The short timescale simulations are achieved for systems far from and close to the Curie point via the implemented Landau-Lifshitz-Gilbert and Landau-Lifshitz-Bloch solvers respectively. This enables read/write simulations for general perpendicular magnetic recording and also state of the art heat assisted magnetic recording (HAMR). The long timescale behaviour is simulated via the Kinetic Monte Carlo solver, enabling investigations into signal-to-noise ratio and data longevity. The combination of these solvers opens up the possibility of multi-timescale simulations within a single software package. For example the entire HAMR process from initial data writing and data read back to long term data storage is possible via a single simulation using MARS. The use of atomistic parameterisation for the material input of MARS enables highly accurate material descriptions which provide a bridge between atomistic simulation and real world experimentation. Thus MARS is capable of performing simulations for all aspects of recording media research and development. This ranges from material characterisation and optimisation to system design and implementation. Comment: 21 pages, 21 figures

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    arXiv.org e-Print Archive
    Other literature type . Preprint . 2022
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    Computer Physics Communications
    Article . 2022 . Peer-reviewed
    License: CC BY
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    https://doi.org/10.48550/arxiv...
    Article . 2022
    License: CC BY NC ND
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      arXiv.org e-Print Archive
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      Computer Physics Communications
      Article . 2022 . Peer-reviewed
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      Article . 2022
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    Authors: Schaal, Patrick; Cheaib, Bachar; Kaufmann, Joshka; Phillips, Karl; +3 Authors

    AbstractBackgroundRapidly spreading parasitic infections like amoebic gill disease (AGD) are increasingly problematic for Atlantic salmon reared in aquaculture facilities and potentially pose a risk to wild fish species in surrounding waters. Currently, it is not known whether susceptibility to AGD differs between wild and farmed salmon. Wild Atlantic salmon populations are declining and this emerging disease could represent an additional threat to their long-term viability. A better understanding of how AGD affects fish health is therefore relevant for the accurate assessment of the associated risk, both to farming and to the well-being of wild populations. In this study, we assessed the impact of natural exposure to AGD on wild, hybrid and farmed post-smolt Atlantic salmon reared in a sea farm together under common garden conditions.ResultsWild fish showed substantially higher mortality levels (64%) than farmed fish (25%), with intermediate levels for hybrid fish (39%) suggesting that AGD susceptibility has an additive genetic basis. Metabolic rate measures representing physiological performance were similar among the genetic groups but were significantly lower in AGD-symptomatic fish than healthy fish. Gut microbial diversity was significantly lower in infected fish. We observed major shifts in gut microbial community composition in response to AGD infections. In symptomatic fish the relative abundance of key taxaAliivibrio,MarinomonasandPseudoalteromonasdeclined, whereas the abundance of PolaribacterandVibrioincreased compared to healthy fish.ConclusionsOur results highlight the stress AGD imposes on fish physiology and suggest that low metabolic-rate fish phenotypes may be associated with better infection outcomes. We consider the role increased AGD outbreak events and a warmer future may have in driving secondary bacterial infections and in reducing performance in farmed and wild fish.

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    Animal Microbiome
    Article . 2022 . Peer-reviewed
    License: CC BY
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    Animal Microbiome
    Article . 2022
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      Animal Microbiome
      Article . 2022 . Peer-reviewed
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    Authors: O. Meinander; P. Dagsson-Waldhauserova; P. Dagsson-Waldhauserova; P. Amosov; +59 Authors

    Dust particles from high latitudes have a potentially large local, regional, and global significance to climate and the environment as short-lived climate forcers, air pollutants, and nutrient sources. Identifying the locations of local dust sources and their emission, transport, and deposition processes is important for understanding the multiple impacts of high-latitude dust (HLD) on the Earth's systems. Here, we identify, describe, and quantify the source intensity (SI) values, which show the potential of soil surfaces for dust emission scaled to values 0 to 1 concerning globally best productive sources, using the Global Sand and Dust Storms Source Base Map (G-SDS-SBM). This includes 64 HLD sources in our collection for the northern (Alaska, Canada, Denmark, Greenland, Iceland, Svalbard, Sweden, and Russia) and southern (Antarctica and Patagonia) high latitudes. Activity from most of these HLD sources shows seasonal character. It is estimated that high-latitude land areas with higher (SI ≥0.5), very high (SI ≥0.7), and the highest potential (SI ≥0.9) for dust emission cover >1 670 000 km2, >560 000 km2, and >240 000 km2, respectively. In the Arctic HLD region (≥60∘ N), land area with SI ≥0.5 is 5.5 % (1 035 059 km2), area with SI ≥0.7 is 2.3 % (440 804 km2), and area with SI ≥0.9 is 1.1 % (208 701 km2). Minimum SI values in the northern HLD region are about 3 orders of magnitude smaller, indicating that the dust sources of this region greatly depend on weather conditions. Our spatial dust source distribution analysis modeling results showed evidence supporting a northern HLD belt, defined as the area north of 50∘ N, with a “transitional HLD-source area” extending at latitudes 50–58∘ N in Eurasia and 50–55∘ N in Canada and a “cold HLD-source area” including areas north of 60∘ N in Eurasia and north of 58∘ N in Canada, with currently “no dust source” area between the HLD and low-latitude dust (LLD) dust belt, except for British Columbia. Using the global atmospheric transport model SILAM, we estimated that 1.0 % of the global dust emission originated from the high-latitude regions. About 57 % of the dust deposition in snow- and ice-covered Arctic regions was from HLD sources. In the southern HLD region, soil surface conditions are favorable for dust emission during the whole year. Climate change can cause a decrease in the duration of snow cover, retreat of glaciers, and an increase in drought, heatwave intensity, and frequency, leading to the increasing frequency of topsoil conditions favorable for dust emission, which increases the probability of dust storms. Our study provides a step forward to improve the representation of HLD in models and to monitor, quantify, and assess the environmental and climate significance of HLD.

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    Atmospheric Chemistry and Physics
    Article . 2022
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    KITopen
    Article . 2022
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    https://doi.org/10.5445/ir/100...
    Article . 2022
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    https://doi.org/10.17169/refub...
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      Atmospheric Chemistry and Physics
      Article . 2022
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      KITopen
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      https://doi.org/10.5445/ir/100...
      Article . 2022
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Onodera, Jonaotaro; Kemp, Alan E.S.; Pearce, Richard B.; Horikawa, Keiji; +1 Authors

    Laminated diatomaceous sediments occur intermittently in the Bering Sea over the past 5 million years. A varve (annually deposited) origin for the laminae has been suggested, but there is currently no consensus. Here, we report results of a study of two laminated intervals dating from ∼528 ka and ∼ 782 ka from IODP Site U1340 on the Bowers Ridge. We combine conventional micropaleontological methods with scanning electron microscope analysis that resolves the seasonal cycle of flux events recorded and demonstrates an annual origin for the laminae. Resting spores of Chaetoceros spp., and more rarely of Thalassiosira antarctica represent early spring blooms with the latter likely due to increased meltwater input. Diatom laminae containing concentrations of Shionodiscus trifultus, Thalassiosira spp., Actinocyclus curvulatus, and Neodenticula seminae, represent flux from the main spring-summer bloom episodes, with the latter indicating influx of seed populations from the North Pacific Alaskan Stream. Concentrations of Coscinodiscus spp. in the uppermost part of the diatom laminae represent “Fall Dump” sedimentation of these stratified-adapted diatoms in response to break down of summer stratification in autumn/early-winter storms. The lithogenic laminae represent mainly winter deposition and rare earth element analysis suggests provenance from the southern Bering Sea shelf and the Aleutian Arc. Productivity was high in the studied intervals with total mass fluxes around 5 times higher than modern values. Variation in lamina thickness and diatom composition contain periodicities of 2–8 years, as well as a bi-decadal variability likely related to influence of the Pacific Decadal Oscillation.

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    Marine Micropaleontology
    Article . 2024 . Peer-reviewed
    License: CC BY
    Data sources: Crossref
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      Marine Micropaleontology
      Article . 2024 . Peer-reviewed
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Davies, Joanna; Lloyd, Jeremy; Pearce, Christof; Seidenkrantz, Marit-Solveig;

    Analysis of benthic foraminifera in surface samples from 23 sites on the Northeast Greenland continental shelf reveal key assemblage differences between sites. Cluster analysis creates two clear geographical faunal assemblage zones: the 1) inner shelf, and 2) mid and outer shelf sites. These assemblages differ significantly, with the inner shelf sites being characterised by a high percentage and concentration of calcareous species, whilst the mid and outer shelf sites are dominated by agglutinated taxa. At almost all sites, the calcareous assemblages are dominated by Cassidulina neoteretis and Cassidulina reniforme, suggesting that they thrive across the shelf. Stetsonia horvathi, Oridorsalis tener, as well as Glomulina oculus and other miliolid species are found to be key calcareous species at many sites in the inner shelf zone, but they are rare-to-absent on the mid and outer shelf. Canonical correspondence analysis shows that September sea-ice cover and bottom water oxygen content are positively correlated with benthic foraminiferal assemblages at inner shelf sites, whereas organic carbon content is correlated with those in the mid and outer shelf. The formation of seasonal sea-ice and the Northeast Water polynya rejects brine into surrounding waters and transports CO2 to the seafloor, creating a highly corrosive environment for calcium carbonate. These environments are also highly productive, as indicated by the high organic carbon content and low bottom water oxygen content. The oxidation of this organic material creates CO2. We propose that these processes are key drivers in the dissolution of calcareous tests. In contrast, extensive sea-ice, high bottom water oxygen content and low primary productivity in the glacier-proximal region facilitates carbonate preservation.

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    ZENODO; Marine Micropaleontology
    Article . 2023 . Peer-reviewed
    License: CC BY
    Data sources: ZENODO; Crossref
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      ZENODO; Marine Micropaleontology
      Article . 2023 . Peer-reviewed
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      Data sources: ZENODO; Crossref
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  • image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    Authors: McCartney, Kevin; Chakraborty, Arindam; Ghosh, Amit K.; Soeding, Emanuel; +1 Authors

    Highlights: • Silicoflagellates more common and diverse in late Eocene, lower in Oligocene. • Record of new species Corbisema tajmahalii from Late Eocene, with interpreted double skeleton (DS). • First known Bachmannocena DS, has corner-aligned configuration. • Observation of early evolution of Stephanocha raupii, transferred to Distephanopsis. Abstract Study of the South Pacific Ocean sediments from IODP Expedition 378, Holes U1553A and U1553B, shows 19 late Eocene to late Oligocene silicoflagellate species. The late Eocene includes Corbisema tajmahalii n. sp., observed over a ∼ 8.4 m interval and proposed as a new subzone within the Corbisema apiculata Zone. The new species is characterized by the presence of basal ring that has three sides and an arrowhead-shaped outline with the two minor-axis corners more closely spaced. This study has found the first known Bachmannocena double skeleton, in corner-aligned configuration that suggests evolutionary relationship with the Corbisema triacantha group of Cenozoic silicoflagellates. Also observed is the apparent early evolution of Stephanocha raupii at ∼29.6 Ma, derived from a skeletal diversity related to Distephanopsis crux, thus the species is here transferred to Distephanopsis (abbreviated as Ds.). Silicoflagellate skeletal abundance declines after the Eocene-Oligocene boundary, with generally low abundance except for two sediment samples immediately below the Ds. raupii n. comb. first appearance.

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      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Mertens, Kenneth; Morquecho, Lourdes; Carbonell-Moore, Consuelo; Meyvisch, Pjotr; +8 Authors

    A new Pentaplacodinium species with six precingular plates is described from Bahía Concepción and Bahía de la Paz, Gulf of California. The non-fossil motile stage is described as Pentaplacodinium lapazense, whilst the fossil stage is described as Operculodinium lapazense. The cyst morphology is compared to topotype material of Operculodinium israelianum, which is larger, has longer processes and has a different wall structure. The motile cells display a plate formula of Po, Pt, X, 2′ + *2′, 6′′, 6c, 7 s, 5′′′, 1p, 1′′′′. A typical gonyaulacalean fission line and plate overlap are observed. SSU-ITS-LSU ribosomal DNA sequences demonstrate that Pentaplacodinium saltonense is its closest relative. The species is homothallic. This species occurs in relatively shallow and restricted coastal areas, and has a preference for higher sea-surface temperatures and salinities. MicroFTIR spectra of the cysts are compared to spectra of cysts of other gonyaulacaleans and suggest very similar compositions. No yessotoxins were detected in any of the analyzed strains, hence, this species is unlikely to be responsible for the elevated yessotoxin concentration observed in shellfish on the southern and central coastal region of the Gulf of California.

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    Marine Micropaleontology
    Article . 2023 . Peer-reviewed
    License: Elsevier TDM
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      Marine Micropaleontology
      Article . 2023 . Peer-reviewed
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    Authors: Gurdebeke, Pieter R.; Mertens, Kenneth Neil; Rajter, Lubomir; Meyvisch, Pjotr; +5 Authors

    The acritarch genus Radiosperma has been reported from plankton and sediments since the late 19th century, with suggested biological affinities ranging from invertebrate eggs to tintinnids. Here, the genus description is improved and its two species, Radiosperma corbiferum and Radiosperma textum, are redescribed. Radiosperma textum is shown to be a ciliate cyst related to Askenasia based on new SSU and LSU rRNA sequences. The spatiotemporal distribution and ecology of both species are discussed. The chemical composition is documented based on micro-Fourier Transform Infrared spectroscopy. Furthermore, new SSU and LSU rRNA sequences for several flask shaped ciliate cysts (Fusopsis, Strombidium) are also included in the analysis and the occurrence of fossilizable cysts in the ciliophoran clade is reviewed.

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    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    Marine Micropaleontology
    Article . 2023 . Peer-reviewed
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      Marine Micropaleontology
      Article . 2023 . Peer-reviewed
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    Authors: Èric Pairet; Juan David Hernandez; Marc Carreras; Yvan Petillot; +1 Authors

    Safe autonomous navigation is an essential and challenging problem for robots operating in highly unstructured or completely unknown environments. Under these conditions, not only robotic systems must deal with limited localization information but also their maneuverability is constrained by their dynamics and often suffers from uncertainty. In order to cope with these constraints, this article proposes an uncertainty-based framework for mapping and planning feasible motions online with probabilistic safety guarantees. The proposed approach deals with the motion, probabilistic safety, and online computation constraints by: 1) incrementally mapping the surroundings to build an uncertainty-aware representation of the environment and 2) iteratively (re)planning trajectories to goal that is kinodynamically feasible and probabilistically safe through a multilayered sampling-based planner in the belief space. In-depth empirical analyses illustrate some important properties of this approach, namely: 1) the multilayered planning strategy enables rapid exploration of the high-dimensional belief space while preserving asymptotic optimality and completeness guarantees and 2) the proposed routine for probabilistic collision checking results in tighter probability bounds in comparison to other uncertainty-aware planners in the literature. Furthermore, real-world in-water experimental evaluation on a nonholonomic torpedo-shaped autonomous underwater vehicle and simulated trials in an urban environment on an unmanned aerial vehicle demonstrate the efficacy of the method and its suitability for systems with limited onboard computational power. Note to Practitioners—Emergent robotic applications require operating in previously unmapped scenarios. This article presents a unified mapping–planning strategy that enables robots to navigate autonomously and safely in harsh environments This work was supported in part by the School of Engineering and Physical Sciences (EPS), Heriot-Watt University, as part of the Centre for Doctoral Training (CDT) in Robotics and Autonomous Systems (Heriot-Watt University and The University of Edinburgh); in part by the Scottish Informatics and Computer Science Alliance (SICSA), ORCA Hub EPSRC (EP/R026173/1), and consortium partners; and in part by the EXCELLABUST and ARCHROV projects under Grant H2020-TWINN2015, CSA, ID:691980 and Grant DPI2014-57746-C3-3-R, respectively, for conducting the experiments in Section VII-A at the Computer Vision and Robotics Institute (VICOROB), University of Girona

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    arXiv.org e-Print Archive
    Other literature type . Preprint . 2020
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    IEEE Transactions on Automation Science and Engineering
    Article . 2022 . Peer-reviewed
    License: CC BY
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    https://doi.org/10.48550/arxiv...
    Article . 2020
    License: arXiv Non-Exclusive Distribution
    Data sources: Datacite
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      Other literature type . Preprint . 2020
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      IEEE Transactions on Automation Science and Engineering
      Article . 2022 . Peer-reviewed
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      https://doi.org/10.48550/arxiv...
      Article . 2020
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    Authors: Roylands, Tobias; Hilton, Robert G.; Garnett, Mark H.; Soulet, Guillaume; +3 Authors

    Weathering of organic carbon contained in sedimentary rocks (petrogenic OC, OCpetro) is an important control on the concentrations of carbon dioxide (CO2) and oxygen in the atmosphere. Of particular significance are steep mountainous catchments, where high rates of physical erosion introduce OCpetro to the surface, where oxygen in air and water can help drive oxidative weathering reactions, yet measurements of CO2 emissions from OCpetro oxidation are still scarce. Here, we use in situ gas accumulation chambers and show that CO2 fluxes, and their environmental controls, can be determined during a stand-alone, short-term (8 days) field campaign, applied to a remote setting. In the rapidly eroding Waiapu River catchment, New Zealand, dominated by mudstones, we measured high rates of CO2 release (222–1590 mgC m−2 d−1) in five accumulation chambers in the near-surface of naturally fractured and bedded rock outcrops. The corresponding CO2 concentrations are very high (pCO2 ~ 4700–27,100 ppmv), and such values could influence acid-hydrolysis reactions during chemical weathering of co-occurring silicate minerals. The CO2 is radiocarbon depleted (fraction modern, F14C = 0.0122–0.0547), confirming it is petrogenic in origin. Stable carbon isotopes suggest a source from OCpetro, but δ13C values of the CO2 are lower by ~3.5–3.7 ± 0.1 ‰ from those of OCpetro (−25.9 ± 0.1 ‰), consistent with isotope fractionation associated with microbial respiration of OCpetro. Over 6 days of measurement, we find that CO2 fluxes respond quickly to changes in temperature and humidity, indicating an environmental regulation that is captured by our short-term installation. The approaches applied here mean that future research can now seek to constrain the climatic, lithological and biological controls on OCpetro oxidation across regional to global scales.

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    Authors: S.E. Rannala; A. Meo; S. Ruta; W. Pantasri; +3 Authors

    Micromagnetic modelling provides the ability to simulate large magnetic systems accurately without the computational cost limitation imposed by atomistic modelling. Through micromagnetic modelling it is possible to simulate systems consisting of thousands of grains over a time range of nanoseconds to years, depending upon the solver used. Here we present the creation and release of an open-source multi-timescale micromagnetic code combining three key solvers: Landau-Lifshitz-Gilbert; Landau-Lifshitz-Bloch; Kinetic Monte Carlo. This code, called MARS (Models of Advanced Recording Systems), is capable of accurately simulating the magnetisation dynamics in large and structurally complex single- and multi-layered granular systems. The short timescale simulations are achieved for systems far from and close to the Curie point via the implemented Landau-Lifshitz-Gilbert and Landau-Lifshitz-Bloch solvers respectively. This enables read/write simulations for general perpendicular magnetic recording and also state of the art heat assisted magnetic recording (HAMR). The long timescale behaviour is simulated via the Kinetic Monte Carlo solver, enabling investigations into signal-to-noise ratio and data longevity. The combination of these solvers opens up the possibility of multi-timescale simulations within a single software package. For example the entire HAMR process from initial data writing and data read back to long term data storage is possible via a single simulation using MARS. The use of atomistic parameterisation for the material input of MARS enables highly accurate material descriptions which provide a bridge between atomistic simulation and real world experimentation. Thus MARS is capable of performing simulations for all aspects of recording media research and development. This ranges from material characterisation and optimisation to system design and implementation. Comment: 21 pages, 21 figures

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    arXiv.org e-Print Archive
    Other literature type . Preprint . 2022
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    Computer Physics Communications
    Article . 2022 . Peer-reviewed
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    https://doi.org/10.48550/arxiv...
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      Computer Physics Communications
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    Authors: Schaal, Patrick; Cheaib, Bachar; Kaufmann, Joshka; Phillips, Karl; +3 Authors

    AbstractBackgroundRapidly spreading parasitic infections like amoebic gill disease (AGD) are increasingly problematic for Atlantic salmon reared in aquaculture facilities and potentially pose a risk to wild fish species in surrounding waters. Currently, it is not known whether susceptibility to AGD differs between wild and farmed salmon. Wild Atlantic salmon populations are declining and this emerging disease could represent an additional threat to their long-term viability. A better understanding of how AGD affects fish health is therefore relevant for the accurate assessment of the associated risk, both to farming and to the well-being of wild populations. In this study, we assessed the impact of natural exposure to AGD on wild, hybrid and farmed post-smolt Atlantic salmon reared in a sea farm together under common garden conditions.ResultsWild fish showed substantially higher mortality levels (64%) than farmed fish (25%), with intermediate levels for hybrid fish (39%) suggesting that AGD susceptibility has an additive genetic basis. Metabolic rate measures representing physiological performance were similar among the genetic groups but were significantly lower in AGD-symptomatic fish than healthy fish. Gut microbial diversity was significantly lower in infected fish. We observed major shifts in gut microbial community composition in response to AGD infections. In symptomatic fish the relative abundance of key taxaAliivibrio,MarinomonasandPseudoalteromonasdeclined, whereas the abundance of PolaribacterandVibrioincreased compared to healthy fish.ConclusionsOur results highlight the stress AGD imposes on fish physiology and suggest that low metabolic-rate fish phenotypes may be associated with better infection outcomes. We consider the role increased AGD outbreak events and a warmer future may have in driving secondary bacterial infections and in reducing performance in farmed and wild fish.

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    Animal Microbiome
    Article . 2022 . Peer-reviewed
    License: CC BY
    Data sources: Crossref
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    Animal Microbiome
    Article . 2022
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      Animal Microbiome
      Article . 2022 . Peer-reviewed
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      Animal Microbiome
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    Authors: O. Meinander; P. Dagsson-Waldhauserova; P. Dagsson-Waldhauserova; P. Amosov; +59 Authors

    Dust particles from high latitudes have a potentially large local, regional, and global significance to climate and the environment as short-lived climate forcers, air pollutants, and nutrient sources. Identifying the locations of local dust sources and their emission, transport, and deposition processes is important for understanding the multiple impacts of high-latitude dust (HLD) on the Earth's systems. Here, we identify, describe, and quantify the source intensity (SI) values, which show the potential of soil surfaces for dust emission scaled to values 0 to 1 concerning globally best productive sources, using the Global Sand and Dust Storms Source Base Map (G-SDS-SBM). This includes 64 HLD sources in our collection for the northern (Alaska, Canada, Denmark, Greenland, Iceland, Svalbard, Sweden, and Russia) and southern (Antarctica and Patagonia) high latitudes. Activity from most of these HLD sources shows seasonal character. It is estimated that high-latitude land areas with higher (SI ≥0.5), very high (SI ≥0.7), and the highest potential (SI ≥0.9) for dust emission cover >1 670 000 km2, >560 000 km2, and >240 000 km2, respectively. In the Arctic HLD region (≥60∘ N), land area with SI ≥0.5 is 5.5 % (1 035 059 km2), area with SI ≥0.7 is 2.3 % (440 804 km2), and area with SI ≥0.9 is 1.1 % (208 701 km2). Minimum SI values in the northern HLD region are about 3 orders of magnitude smaller, indicating that the dust sources of this region greatly depend on weather conditions. Our spatial dust source distribution analysis modeling results showed evidence supporting a northern HLD belt, defined as the area north of 50∘ N, with a “transitional HLD-source area” extending at latitudes 50–58∘ N in Eurasia and 50–55∘ N in Canada and a “cold HLD-source area” including areas north of 60∘ N in Eurasia and north of 58∘ N in Canada, with currently “no dust source” area between the HLD and low-latitude dust (LLD) dust belt, except for British Columbia. Using the global atmospheric transport model SILAM, we estimated that 1.0 % of the global dust emission originated from the high-latitude regions. About 57 % of the dust deposition in snow- and ice-covered Arctic regions was from HLD sources. In the southern HLD region, soil surface conditions are favorable for dust emission during the whole year. Climate change can cause a decrease in the duration of snow cover, retreat of glaciers, and an increase in drought, heatwave intensity, and frequency, leading to the increasing frequency of topsoil conditions favorable for dust emission, which increases the probability of dust storms. Our study provides a step forward to improve the representation of HLD in models and to monitor, quantify, and assess the environmental and climate significance of HLD.

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    Atmospheric Chemistry and Physics
    Article . 2022
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    KITopen
    Article . 2022
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    https://doi.org/10.5445/ir/100...
    Article . 2022
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    https://doi.org/10.17169/refub...
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      https://doi.org/10.5445/ir/100...
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