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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Aumont, Olivier; Rodgers, Keith;

    The repository contains the version of PISCES that was used to investigate the role played by low latitudes and the Southern Ocean at sustaining export production and PP in the low latitudes. This code is based on version 3.6 of NEMO and the repository only includes routines that have been changed with respect to this version. The code is in Fortran 90.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Jong, Dirk; Bröder, Lisa; Tesi, Tommaso; Tanski, George; +6 Authors

    This study aims to give insight into the processes affecting permafrost organic carbon (OC) during transport from its source to its sink, through a study on three sediment fractions along a land-to-ocean transect. Material was followed from thawing permafrost, through a dynamic 'disturbed zone' and the nearshore zone, to an enclosed basin offshore Herschel Island - Qikiqtaruk, to assess sorting and degradation processes on specific fractions of sediment OC. Sediment, soil and permafrost samples were taken along a transect from the source (undisturbed active layer and permafrost), via two transitional zones (a terrestrial disturbed zone, i.e. the 'scar zone' of the RTS, and the marine nearshore zone up to a water depth of 5 m), to sink (basin sediment, water depth >20 m) at the coast of Herschel Island – Qikiqtaruk and the (semi-enclosed) Herschel Basin in Yukon, Canada, just west of the Mackenzie River delta. Samples were taken in May 2016 and July 2017. Sample material was fractionated with an aqueous (MilliQ) solution of sodium polytungstate (SPT; Na6[H2W12O40]), with a density of 1.8 g cm³, followed by wet-sieving over a 63 µm mesh, thus separating loose OC from mineral-associated OC. Each fraction was analysed for element content (TOC, TN), carbon isotopes (δ¹³C, Δ¹⁴C), molecular biomarkers (n-alkanes, n-alkanoic acids, lignin phenols, cutin acids), and mineral surface area. The relative abundance of specific biomarkers can also be used as indicator for degradation of organic carbon. Furthermore, the OC 'loading' (concentration of OC normalised to mineral surface area; in mgOC/m²) and terrestrial biomarker loading (µgOC/m²) can be used to assess loss of (permafrost) OC from mineral particles. The combination of these methods allows us to disentangle sorting processes from degradation of OC along the land-to-ocean continuum, and provides a detailed insight into the fate of thawed and eroded permafrost OC.

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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ PANGAEA - Data Publi...arrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Guillerm, Emmanuel; Gardien, Véronique; Waldmann, Nicolas D; Brall, Niels S; +5 Authors

    The rain regime in the Eastern Mediterranean is primarily controlled by Mediterranean winter cyclonic systems. The lake level of the Dead Sea responds sensitively to hydrological changes, and can be used to track the evolution of the Mediterranean hydroclimate during the late Quaternary. However, lake level reconstructions beyond 70 ka are limited by a lack of paleoshorelines and dating methodologies. Here, we reconstruct the Dead Sea lake level back to 237 ka using measurements of brine density from halite fluid inclusions of the deep ICDP core 5017-1-A. We combine our mass balance-based reconstruction with an age reevaluation of published sequence stratigraphy-based lake levels, by tying their chronology to the ICDP core. The lake levels obtained with the two different methods compare very well, within better than 10 m. Combined with a compilation of published paleoshorelines for the last 70 ka, our reconstruction covers three glacial-interglacial cycles.

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    Authors: Pinho, Tainã Marcos Lima; Chiessi, Cristiano Mazur; Campos, Marília C; Portilho-Ramos, Rodrigo Costa; +9 Authors

    To comprehensively document the δ13C content of the South Atlantic Central Water (SACW), we used high-resolution thermocline-dwelling foraminiferal δ13C data obtained from three distinct marine sediment cores situated in the NW, SW, and SE regions of the South Atlantic. Our dataset enables a comprehensive examination of millennial-scale variations in SACW δ13C content across the entire basin. Notably, the thermocline δ13C records from the SE and NW sectors of the South Atlantic consistently exhibit concurrent negative excursions during most of the Heinrich Stadials (HS), a pattern that contrasts sharply with the absence of such negative excursions in the thermocline δ13C record from the SW sector of the South Atlantic

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ PANGAEA - Data Publi...arrow_drop_down
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ PANGAEA - Data Publi...arrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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    Authors: Trouche, Blandine;

    Anvi'o databases of the 47 ammonia-oxidizing archaea MAGs from abyssal and hadal surface sediments presented in Trouche et al, 2023 (https://doi.org/10.1038/s43705-023-00341-6). 

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    Other ORP type . 2023
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    Authors: Delaporte, Baptiste; Arsouze, Thomas; Keppel, Gunnar; Jullien, Swen; +2 Authors

    Version reviewed for software paper in "The Journal of Open Source Software". You can find the article here

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    ZENODO
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    ZENODO
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      ZENODO
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    Authors: Baptiste Delaporte; Thomas, Arsouze; Thomas Ibanez; Gunnar, Keppel; +2 Authors

    Version reviewed for software paper in "The Journal of Open Source Software". You can find the article here

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    Authors: Gentili, Bernard; Gattuso, Jean-Pierre; Schlegel, Robert William;

    Satellite data collected between 2003 and 2022, in conjunction with gridded bathymetric data (50-150 m resolution), are used to estimate the irradiance reaching the bottom of a series of representative EU Arctic fjords. An Earth System Science Data (ESSD) manuscript, Schlegel et al. (2023, in review), that provides a detailed explanation of the methodology is currently in review.

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    Authors: Martínez Moreno, Josué;

    This dataset includes the NEMO 4.0.2 configuration used and analysed in the paper titled "Eddy-driven heterogeneity in sea ice during the ice-growth season". The output data is approximately 4TB for the 3 idealised configuration used in the manuscript, thus we opted to distribute the configuration. Note: The initial conditions for each simulation are compressed into the file `init_cond.zip` The configuration for one of the simulations is compressed in the file `config.zip` In order to reproduce all the runs, it's only required to change the initial conditions in the file namelist_cfg and namelist_ice_cfg. Further information and scripts to reproduce the result of the manuscript can be found at: https://github.com/josuemtzmo/Ice_formation

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    ZENODO
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    Authors: Baptiste Delaporte; Thomas Arsouze; Thomas Ibanez; Gunnar, Keppel; +2 Authors

    CRAN first version Adjust vignettes for CRAN submission Remove sp dependences Minor bugfixes

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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Aumont, Olivier; Rodgers, Keith;

    The repository contains the version of PISCES that was used to investigate the role played by low latitudes and the Southern Ocean at sustaining export production and PP in the low latitudes. This code is based on version 3.6 of NEMO and the repository only includes routines that have been changed with respect to this version. The code is in Fortran 90.

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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Jong, Dirk; Bröder, Lisa; Tesi, Tommaso; Tanski, George; +6 Authors

    This study aims to give insight into the processes affecting permafrost organic carbon (OC) during transport from its source to its sink, through a study on three sediment fractions along a land-to-ocean transect. Material was followed from thawing permafrost, through a dynamic 'disturbed zone' and the nearshore zone, to an enclosed basin offshore Herschel Island - Qikiqtaruk, to assess sorting and degradation processes on specific fractions of sediment OC. Sediment, soil and permafrost samples were taken along a transect from the source (undisturbed active layer and permafrost), via two transitional zones (a terrestrial disturbed zone, i.e. the 'scar zone' of the RTS, and the marine nearshore zone up to a water depth of 5 m), to sink (basin sediment, water depth >20 m) at the coast of Herschel Island – Qikiqtaruk and the (semi-enclosed) Herschel Basin in Yukon, Canada, just west of the Mackenzie River delta. Samples were taken in May 2016 and July 2017. Sample material was fractionated with an aqueous (MilliQ) solution of sodium polytungstate (SPT; Na6[H2W12O40]), with a density of 1.8 g cm³, followed by wet-sieving over a 63 µm mesh, thus separating loose OC from mineral-associated OC. Each fraction was analysed for element content (TOC, TN), carbon isotopes (δ¹³C, Δ¹⁴C), molecular biomarkers (n-alkanes, n-alkanoic acids, lignin phenols, cutin acids), and mineral surface area. The relative abundance of specific biomarkers can also be used as indicator for degradation of organic carbon. Furthermore, the OC 'loading' (concentration of OC normalised to mineral surface area; in mgOC/m²) and terrestrial biomarker loading (µgOC/m²) can be used to assess loss of (permafrost) OC from mineral particles. The combination of these methods allows us to disentangle sorting processes from degradation of OC along the land-to-ocean continuum, and provides a detailed insight into the fate of thawed and eroded permafrost OC.

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    Authors: Guillerm, Emmanuel; Gardien, Véronique; Waldmann, Nicolas D; Brall, Niels S; +5 Authors

    The rain regime in the Eastern Mediterranean is primarily controlled by Mediterranean winter cyclonic systems. The lake level of the Dead Sea responds sensitively to hydrological changes, and can be used to track the evolution of the Mediterranean hydroclimate during the late Quaternary. However, lake level reconstructions beyond 70 ka are limited by a lack of paleoshorelines and dating methodologies. Here, we reconstruct the Dead Sea lake level back to 237 ka using measurements of brine density from halite fluid inclusions of the deep ICDP core 5017-1-A. We combine our mass balance-based reconstruction with an age reevaluation of published sequence stratigraphy-based lake levels, by tying their chronology to the ICDP core. The lake levels obtained with the two different methods compare very well, within better than 10 m. Combined with a compilation of published paleoshorelines for the last 70 ka, our reconstruction covers three glacial-interglacial cycles.

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    Authors: Pinho, Tainã Marcos Lima; Chiessi, Cristiano Mazur; Campos, Marília C; Portilho-Ramos, Rodrigo Costa; +9 Authors

    To comprehensively document the δ13C content of the South Atlantic Central Water (SACW), we used high-resolution thermocline-dwelling foraminiferal δ13C data obtained from three distinct marine sediment cores situated in the NW, SW, and SE regions of the South Atlantic. Our dataset enables a comprehensive examination of millennial-scale variations in SACW δ13C content across the entire basin. Notably, the thermocline δ13C records from the SE and NW sectors of the South Atlantic consistently exhibit concurrent negative excursions during most of the Heinrich Stadials (HS), a pattern that contrasts sharply with the absence of such negative excursions in the thermocline δ13C record from the SW sector of the South Atlantic

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    Authors: Trouche, Blandine;

    Anvi'o databases of the 47 ammonia-oxidizing archaea MAGs from abyssal and hadal surface sediments presented in Trouche et al, 2023 (https://doi.org/10.1038/s43705-023-00341-6). 

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    ZENODO
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Delaporte, Baptiste; Arsouze, Thomas; Keppel, Gunnar; Jullien, Swen; +2 Authors

    Version reviewed for software paper in "The Journal of Open Source Software". You can find the article here

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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Baptiste Delaporte; Thomas, Arsouze; Thomas Ibanez; Gunnar, Keppel; +2 Authors

    Version reviewed for software paper in "The Journal of Open Source Software". You can find the article here

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