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The configuration files provided here produced the CROCO model output analysed in "The land-sea breeze influences the oceanography of the southern Benguela upwelling system at multiple time-scales" by Fearon et. al (2023) submitted to Frontiers in Marine Science, section Physical Oceanography. The provided files include the adopted compile options, code used to generate the model forcing files (grids, boundary conditions and surface forcing), and model runtime settings.

There are several research infrastructures or other data services running in Europe that cover a multitude of marine-related sciences, providing specific datasets coming from observations collected with different methods. These infrastructures constitute a diverse world, each looking at a piece of the big picture, sometimes hindering collaboration and data sharing. Blue-Cloud aims to overcome fragmentation and build a bridge between thematic science clusters - such as marine, climate, food and agriculture sciences - and EOSC, creating a data federation and providing a common access to a so-called thematic EOSC for marine data. By connecting leading marine data management infrastructures with horizontal e-infrastructures, the project aims to maximise the exploitation of data resources available from different sources. The Blue-Cloud framework consists of two major technical components: (1) a Blue-Cloud Data Discovery and Access service, already presented in a previous EOSC in practice story, to serve federated discovery and access to blue data infrastructures, and (2) a Blue-Cloud Virtual Research Environment (VRE) to provide computing platforms and analytical services facilitating the collaboration between researchers, which is detailed hereafter. The Blue-Cloud VRE is powered by the D4Science Infrastructure. [M. Assante et al. (2019) Enacting open science by D4Science. Future Gener. Comput. Syst. 101: 555-563 10.1016/j.future.2019.05.063 ] The full list of EOSC in practice stories is available here

The multi-species ecosystem model SS-DBEM integrates a species based model (DBEM) with the spectrum approach (SS). This model includes a large number of mechanisms and ecological processes such as population growth, movement, and dispersal of adults and larvae, as well as the ecophysiological effects of temperature, oxygen, and pH on body size, growth, mortality, and reproduction. The SS-DBEM model provides spatially (at a 0.5x0.5º resolution) and temporally (yearly) resolved predictions of changes in species’ size, abundance and biomass with consideration of competition. The competition algorithm describes the resource allocation between different species co-occurring in a spatial unit (thereafter cell) by comparing the flux of energy (in biomass) that can be supported (estimated with the SS model) with the energy demanded by the species predicted to inhabit that cell (estimated with the DBEM model). In addition, the environmental conditions are considered in the mechanisms and since there are different environmental conditions that are provided by the biogeochemical models, species responses are also different spatially. See readme.txt for scientific publications developing and using the model.

This dataset presents temperature and precipitation reconstruction from pollen records of the Northern Hemisphere. Most of the pollen proxy data where retrieved from the Neotoma Paleoecology Database (https://www.neotomadb.org/), with additional data from Cao et al. (2020; https://doi.org/10.5194/essd-12-119-2020), Cao et al. (2013, https://doi.org/10.1016/j.revpalbo.2013.02.003) and our own collection. Mean July temperature, annual mean temperature and annual precipitation were reconstructed for 2593 sites (1030 sites in North America, 1075 sites in Europe and 488 sites in Asia) using the full modern temperature and precipitation range, as well as using a "tailored" version, where we restricted a climate variable range to reconstruct the respective other climate variable in order to minimize the impact of co-correlation. Statistics on the used calibration sets (i.e. all samples within 2000 km distance to the fossil pollen records) are also provided, as well as results from the significance test of the reconstructions sensu Telford & Birks (2011). The data collection is subdivided in 4 geographical regions: The European, the Asian and for North America the Western North American and the Eastern North American sector. We complement the data publication by providing the source information on the references (most data are related to Neotoma) as a table linked to each Dataset ID, The Dataset- and Site-IDs are from Neotoma if the data sets are derived from the Neotoma repository. In case of our own data collection efforts (Cao et al. (2020), Cao et al. (2013) and our own data) we used the already published PANGAEA event names in case they are related to the data or created own site names with referencing to geographical regions similar to the Neotoma data naming principle.

This bundled publication contains data sets on 1) Polyp size and sex: biometric data of polyps from Dendrophyllia ramea, as well as the sex of each analysed polyp; 2) Oocyte per mesentery: number of oocytes per analysed mesentery; 3) Oocytes per polyp: these data have been used to calculate fecundity; 4) Oocyte developmental stages: oocyte sizes and developmental stage are included; 5. Spermatic cysts: spermatic cysts sizes and developmental stage are included. A total of three polyps per each coral colony have been analysed by histological methods and a total of three coral colonies have been analysed for each sampling month: February 2018, May 2017, July 2018 and October 2017. Samples have been collected in the protected area of Punta La Mona (Granada, Alborán Sea, western Mediterranean) between 30 and 37 meters depth by scuba diving.

This study aimed at isolating microorganisms associated with the mesopelagic jellyfish Periphylla periphylla collected in Irminger Sea at a depth of 325 m in July 2020. Three different solid cultivation media; Hastings, Marine agar and Wickerham media were used for the isolation of the associated microorganisms. A total of 43 bacteria were isolated from the inner and outer surfaces of the umbrella of P. periphylla, but unfortunately, no fungal strain was isolated. Isolates were further identified by Sanger sequencing of the 16S rRNA gene, and based on phylogenetic distinctiveness (differences in closest relative species according to the nucleotide BLAST), 16 bacteria belonging to 8 different genera were selected and subjected to an OSMAC cultivation regime approach using liquid and solid marine broth and glucose– yeast–malt media. After 7 days of cultivation, cultures were extracted with ethyl acetate and assessed for antimicrobial activity against fish and human pathogens. Based on antimicrobial activity assessment, four most bioactive strains; Polaribacter sp. SU124, Shewanella sp. SU126, Psychrobacter sp. SU143 and Psychrobacter sp. SU137, were prioritized for a comparative and untargeted metabolomics analysis using feature-based molecular networking. These findings highlight the biotechnological potential of P. periphylla-associated microbiota.

Here, we present internal reflection horizons (IRHs) picked in radargrams in the Dome Fuji region, Antarctica based on 22 radar profiles collected with the airborne radio-echo sounding (RES) system of the AWI mounted on its Basler BT-67 aircraft during the 2016/17 Antarctic season. 6 or 7 IRHs are traced in each radargram. The IRHs are then conneced to the Dome Fuji ice core and used to transfer the age-depth scale from the ice core to the large Dome Fuji region. The age-depth information of the IRHs are then input to a 1D ice flow model to recostruct the age field in the lower part of ice, and to evaluate basal thermal state.

Results from six firn cores obtained during a 426 km long northern Greenland traverse in 2015 between the NEEM and the EGRIP deep drilling stations situated on the Western and Eastern side of the Greenland ice sheet, respectively. The cores (9 to 14 m long) are analysed for chemical impurities by means of Continuous Flow Analysis (CFA); Insoluble dust, ammonium, calcium, acid, conductivity and peroxide. The data was dated by means of annual layer counting of mainly peroxide supplemented by calcium seasonal cycles and spans 18 to 53 years (±3 yrs) depending on local snow accumulation that decreases from west to east. Insoluble dust, ammonium, and calcium concentrations in the 6 firn cores overlap, and also the seasonal cycles are similar in timing and magnitude across sites, while peroxide (H2O2) and conductivity both have spatial variations. H2O2 is driven by the accumulation pattern and conductivity is likely influenced by sea salt. Data is published as part of Kjær et al. 2022, Climate of the past, https://doi.org/10.5194/cp-2021-99

Three high resolution multicore records have been collected at three sites in the western Mediterranean with a MC400-Multicorer system during the MedSeA cruise (Mediterranean Sea Acidification in a changing climate) on 2 May to 2 June 2013 onboard the R/V Angeles Álvarino. Core MedSeA-S3-c1 was retrieved in the Alboran basin (Lat. 36.0746° N, Long. 04.11040° W) at a water depth of 1137 m, with a core length of 33 cm. Core MedSeA-S23-c1 was recovered at a water depth of 1156 m in the Balearic basin offshore Barcelona (Lat. 41.1121° N, Long. 2.38200° E) with a core length of 43 cm. MedSeA-S7-c2 was collected at the Strait of Sicily (Lat. 37.7080° N, Long. 12.40553° E) at a water depth of 263 m, with a core length of 46.5 cm. All three cores have been analyzed for changes in size normalized weight (SNW) and stable carbon isotopes (δ13C), measured in planktic foraminiferal clacite shells of the two species Globigerina bulloides and Globigerinoides elongatus. Boron (δ11B) isotopes have been measured in tests of Globigerinoides elongatus at the Alboran site, and in Globigerinoides ruber albus at the Strait of Sicily. Complementary data for the Strait of Sicily record has been obtained, including a 210Pb based age depth model, sea surface temperatures (SST), alkenone concentrations and planktic foraminiferal assemblage changes. The Strait of Sicily record (MedSeA-S7-c2) covers around the last 200 a, describing environmental changes throughout the Industrial Era (IE) at high temporal resolution. The Alboran (MedSeA-S3-c1) and Balearic Sea (MedSeA-S23-c1) records spanning the last about 1 ka at lower temporal resolution, displaying oceanographic changes throughout the transition from the pre-industrial era to present, as discussed in (Pallacks et al., 2021; doi:10.1016/j.gloplacha.2021.103549). Data has been collected to investigate the response of marine calcifiers to the combined effects of climate change stressors on decadal to centennial timescales, caused by anthropogenic CO2 emissions.

This REcoM code version was used in Seifert et al. 2022 (doi:10.1525/elementa.2021.00104). More information in readme.txt. Full Changelog: https://github.com/mseifert93/Seifert_et_al_2022_REcoM_code/commits/v1.0.0