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Funding: Fundação para a Ciência e a Tecnologia (UIDB/00006/2020); US Navy (Living Marine Resources N3943019C2176) - TAM. Animal songs can change within and between populations as the result of different evolutionary processes. When these processes include cultural transmission, the social learning of information or behaviours from conspecifics, songs can undergo rapid evolutions because cultural novelties can emerge more frequently than genetic mutations. Understanding these song variations over large temporal and spatial scales can provide insights into the patterns, drivers and limits of song evolution that can ultimately inform on the species' capacity to adapt to rapidly changing acoustic environments. Here, we analysed changes in fin whale (Balaenoptera physalus) songs recorded over two decades across the central and eastern North Atlantic Ocean. We document a rapid replacement of song INIs (inter-note intervals) over just four singing seasons, that co-occurred with hybrid songs (with both INIs), and a clear geographic gradient in the occurrence of different song INIs during the transition period. We also found gradual changes in INIs and note frequencies over more than a decade with fin whales adopting song changes. These results provide evidence of vocal learning in fin whales and reveal patterns of song evolution that raise questions on the limits of song variation in this species. Publisher PDF Peer reviewed

Hydropower can have significant impacts on riverine ecosystems due to hydropeaking (i.e., artificial rapid and short-term fluctuations in water flow and water levels downstream and upstream of hydropower stations) that negatively affect downstream fish. However, when it comes to analyzing species habitat use and availability above and below small hydropower plants (SHPPs), studies conducted at the microhabitat scale are scarcer, particularly in Mediterranean rivers. The goal of this study is to assess the seasonal (early and late summer) and size-related (juveniles and adults) microhabitat use by native fish above and below SHPPs. Fish were sampled by a modified point electrofishing procedure, and a multivariate approach was used to analyze microhabitat use and availability data from sites located upstream (reference) and downstream (disturbed) from two SHPPs in northeast Portugal. Cover and water depth were the most influential variables in the use of microhabitat for all species at both the reference and disturbed sites, although some differences in the variable rankings were found. Leuciscids exhibited similar patterns of non-random (i.e., selective) microhabitat use between the reference and the disturbed sites. Overall, the seasonal and size-related patterns in species microhabitat use were similar, with the majority of species displaying seasonal patterns in microhabitat use from early summer to late summer. This study showed that differences in fish microhabitat use between downstream SHPP and upstream reference sites were negligible. Cover might have had a significant role in tempering the effects of detrimental environmental conditions, namely, peaking flows, by providing hydraulic shelter, highlighting the need to maintain riparian vegetation strips and mosaics of submerged aquatic macrophytes, as well as the provision of coarse substrata that can be critical for fish. Future studies are needed to better clarify how different size classes of fish select microhabitats when facing past and present hydropeaking conditions.

[Introduction] The production of resting cysts is a key dispersal and survival strategy of many dinoflagellate species. However, little is known about the role of suspended cysts in the benthic nepheloid layer (BNL) in the initiation and decline of planktonic populations. [Method] In September 2019, sampling of the dinoflagellate cyst community at different water depths in the water column and in the bottom sediments, and studies of spatio-temporal changes in physical properties (temperature, salinity, density and suspended sediment concentration), were carried out along a land-sea transect off Figueira da Foz (NW Portugal) to investigate the dinoflagellate cyst distribution and the factors (physical and biological) affecting it. A clustering analysis was used to compare the BNL and sediment cyst records with the cyst rain recorded by a sediment trap at a fixed station. Furthermore, Lagrangian particle experiments enabled simulating cyst trajectories in the BNL 5 and 10 days before sampling and assessing cross-shore, vertical and alongshore transport within the studied region. [Results] A well-developed BNL was present during the survey, which covered a change from active (14th of September) to relaxed (19th of September) upwelling conditions. Organic-walled dinoflagellate cysts were dominant in all samples, although calcareous dinoflagellate cysts consistently occurred (at low abundances). High proportions of full cysts were observed in the BNL, of which a significant portion was viable as shown by excystment experiments. Moreover, BNL cyst records collected on the 19th of September along the land-sea transect were similar to the sediment trap cyst record but greatly differed from sediment cyst records. The heterotrophic small spiny brown cysts (SBC) and cysts of the autotrophic yessotoxin-producer Protoceratium reticulatum notably increased during the survey, in the BNL and in the water column above. [Discussion] The comparison of the BNL, surface sediment and sediment trap cyst records supported that the main origin of cysts in the BNL was the recent production in the water column. The spatial coincidences in the distribution of cysts and vegetative cells of Protoceratium reticulatum also supported that full cysts in the water column were being produced in surface waters. New data evidenced the presence of a significant reservoir of viable cysts in the BNL that have the potential to seed new planktonic blooms. Furthermore, back-track particle modelling evidenced that alongshore advection was the main physical mechanism controlling cyst dynamics in the BNL during most part of the survey period, being particularly intense in coastal stations (<100 m depth). Consequently, the sediment cyst signal is a mixture of locally and regionally produced cysts. We provide multi-disciplinary data evidencing that cysts recently formed in the photic zone can be laterally advected within the studied region through the BNL, contributing to a better understanding of the role of the BNL in cyst dynamics and tracing the seed sources of the new blooms This work is a contribution to HABWAVE project LISBOA-01-0145-FEDER-031265, co-funded by EU ERDF funds, within the PT2020 Partnership Agreement and Compete 2020, and national funds through Fundação para a Ciência e Tecnologia, I.P.(FCT, I.P.) also to AQUIMAR project MAR2020; MAR-02.01.01-FEAMP-017. This study had the support of FCT through the strategic projects UIDB/04292/2020 and UIDP/04292/2020 awarded to MARE and through project LA/P/0069/2020 granted to the Associate Laboratory ARNET, the strategic project UIDB/04326/2020 awarded to CCMAR. Thanks are also due for the financial support to CESAM by FCT/MCTES (UIDP/50017/2020+UIDB/50017/2020+LA/P/0094/2020), Partnership Agreement and Compete 2020. IG-M was supported by a postdoctoral fellowship from Xunta de Galicia, Spain (ref. ED481B-2019-074, 2019). JM gratefully acknowledges the Fundação para a Ciência e Tecnologia and its support via strategic funding UIDB/04423/2020 and UIDP/04423/2020, and project MIWAVES (PTDC/2022.01215.PTDC) 30 pages, 12 figures, 3 tables.-- This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY) Peer reviewed

In this work, we propose a model-based deep learning reconstruction algorithm for optical projection tomography (ToMoDL), to greatly reduce acquisition and reconstruction times. The proposed method iterates over a data consistency step and an image domain artefact removal step achieved by a convolutional neural network. A preprocessing stage is also included to avoid potential misalignments between the sample center of rotation and the detector. The algorithm is trained using a database of wild-type zebrafish (Danio rerio) at different stages of development to minimise the mean square error for a fixed number of iterations. Using a cross-validation scheme, we compare the results to other reconstruction methods, such as filtered backprojection, compressed sensing and a direct deep learning method where the pseudo-inverse solution is corrected by a U-Net. The proposed method performs equally well or better than the alternatives. For a highly reduced number of projections, only the U-Net method provides images comparable to those obtained with ToMoDL. However, ToMoDL has a much better performance if the amount of data available for training is limited, given that the number of network trainable parameters is smaller. LCF/PR/HR22/00533; Grant agreement no.101094250; WT 203148/Z/16/Z info:eu-repo/semantics/publishedVersion

Argyrosomus regius (commonly referred to as meagre), is one of Europe's largest coastal bony fish species and supports important recreational and commercial fisheries in the Atlantic and Mediterranean coasts. Demand for this species, and more recently for their swim bladders, has led to regional population declines and growing importance as an aquaculture species. Despite intense research in captivity, little is known about the spatial ecology of A. regius's wild population, including basic information such as vertical migrations and depth/temperature preferences. Previous research based on indirect data suggests a seasonal habitat shift from shallow to deeper waters, but this has never been validated through direct high-resolution movement data. In this study, we tagged 13 adult A. regius with pop-up satellite archival tags in the South of Portugal, which successfully returned data from 11 individuals including high-resolution data from six recovered tags (mean, range: 167 days, 28-301 days). We found that adults of this population spend 95.2% of their time between 5 and 75 m depth (mean +/- SD, 30.9m +/- 18.3m) and do not venture beyond 125 m. Across seasons, A. regius move across water temperatures between 13.3 and 24.8 degrees C with a preferred thermal range between 14 and 18 degrees C where they spent 75.4% of their time. The inferential modelling using this electronic data validated previous hypotheses by showing significant differences between a shallower and warmer summer habitat vs. a deeper and cooler winter habitat. Visual investigation of the diel effects on depth preferences suggests subtle changes in depth use between day and night during the warmer months of the year. We speculate that these patterns are in response to the species' behavioural ecology and physiology, reflecting the seasonal changes in water stratification and presence of prey, as well as on the species reproduction, which results in summer spawning aggregations in shallower areas. info:eu-repo/semantics/publishedVersion

Cephalopods are well known for their cognitive capabilities and unique behavioural repertoires. Yet, certain life strategies and behaviours are still not fully understood. For instance, coastal octopuses have been documented (mainly through citizen science and TV documentaries) to occasionally leave the water and crawl in intertidal areas. Yet, there is a complete lack of knowledge on this behaviour's physiological and biochemical basis. Within this context, this study aimed to investigate, for the first time, physiological (routine and maximum metabolic rates and aerobic scope) and biochemical (i.e., antioxidant enzymes activities, heat shock protein and ubiquitin levels, DNA damage, lipid peroxidation) responses of the common octopus, Octopus vulgaris, to emersion. The octopuses’ physiological performance was determined by measuring metabolic rates in different emersion treatments and biochemical markers. The size-adjusted maximum metabolic rates (MMRadj) of octopuses exposed to 2:30 min of air exposure followed by re-immersion did not differ significantly from the MMRadj of the chased individuals (control group). Yet, most biochemical markers revealed no significant differences among the different emersion treatments. Our findings showed that O. vulgaris could tolerate exposure to short-term emersion periods due to an efficient antioxidant machinery and cellular repair mechanisms. Alongside, we argue that the use of atmospheric air through the mucus-covered gills and/or cutaneous respiration may also help octopus withstand emersion and crawling on land.