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DRYAD; NARCIS
Dataset . 2019
License: CC 0
Data sources: Datacite; NARCIS
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DANS-EASY
Dataset . 2018
Data sources: B2FIND
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ZENODO
Dataset . 2019
License: CC 0
Data sources: ZENODO
Borealis
Dataset . 2021
Data sources: Datacite
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Data from: The evolutionary history of dogs in the Americas

Authors: Leathlobhair, Máire Ní; Perri, Angela R.; Irving-Pease, Evan K.; Witt, Kelsey E.; Linderholm, Anna; Haile, James; Lebrasseur, Ophelie; +43 Authors

Data from: The evolutionary history of dogs in the Americas

Abstract

Dogs were present in the Americas prior to the arrival of European colonists, but the origin and fate of these pre-contact dogs are largely unknown. We sequenced 71 mitochondrial and seven nuclear genomes from ancient North American and Siberian dogs spanning ~9,000 years. Our analysis indicates that American dogs were not domesticated from North American wolves. Instead, American dogs form a monophyletic lineage that likely originated in Siberia and dispersed into the Americas alongside people. After the arrival of Europeans, native American dogs almost completely disappeared, leaving a minimal genetic legacy in modern dog populations. Remarkably, the closest detectable extant lineage to pre-contact American dogs is the canine transmissible venereal tumor, a contagious cancer clone derived from an individual dog that lived up to 8,000 years ago.

Mitochondrial DNA FASTA fileFASTA file containing 1166 dog mtDNA genomes used in this studyfull_mtDNA_alignment.fastaNEXUS treeMaximum likelihood tree (RAxML) of 1166 dogs mtDNA genomes used in this studyfull_mtDNA_alignment.treExcel sheetPublication source of the 1166 mtDNA genomes used in this studyfull_mtDNA_alignment.xlsxPlink (bed) fileContains genotype for dogs 54 dogsfull_data.bedPlink file (bim)Contains genotype for 54 dogsfull_data.bimPlink file (fam)Contains genotype for 54 dogsfull_data.famNJ tree in Figure 2bNJ tree in Figure 2b (see Table S2 for more info)Figure_b.treNexus fileNexus file used for producing Figure S12 (MKV model in MrBayes)Binary_char_MKV.nexNEXUS treeBayesian tree in Figure S12 (see Table S2 for more info)Figure_S12.tre

Keywords

medicine and health care, Canis lupus familiaris, Medicine, Life sciences, Canis lupus

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Funded byView all
EC| UNDEAD
Project
UNDEAD
Unifying Domestication and Evolution through Ancient DNA
  • Funder: European Commission (EC)
  • Project Code: 337574
  • Funding stream: FP7 | SP2 | ERC
,
NIH| Comprehensive Characterization of Canine Genomic Structural Diversity
Project
  • Funder: National Institutes of Health (NIH)
  • Project Code: 5R01GM103961-03
  • Funding stream: NATIONAL INSTITUTE OF GENERAL MEDICAL SCIENCES
result:project:semrel
,
NSF| Doctoral Dissertation Research: Human Population Inferences Via Canine Genetics
Project
  • Funder: National Science Foundation (NSF)
  • Project Code: 1540336
result:project:semrel
,
EC| Extinction Genomics
Project
Extinction Genomics
Exploring and exploiting the potential of extinct genome sequencing
  • Funder: European Commission (EC)
  • Project Code: 681396
  • Funding stream: H2020 | ERC | ERC-COG
result:project:semrel
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