research data . Dataset . 2022

May2022 reference datasets for Mitohelper

Lim,Jean; Thompson,Luke;
Open Access English
  • Published: 06 May 2022
  • Publisher: Zenodo
Abstract
Reference datasets (May 2022 update) for Mitohelper (https://github.com/aomlomics/mitohelper) Mitohelper is a repository built to facilitate experimental design, alignment visualization, and reference sequence analysis in fish eDNA studies. Refer to our paper and Mitohelper's wiki for database construction pipeline. I. Reference database files in tab-separated format, containing gene, taxonomy, and sequence information: mitofish.all.May2022.tsv (738,109 records) mitofish.12S.May2022.tsv (40,245 records) mitofish.COI.May2022.tsv (258,943 records) II. De-replicated QIIME 2-compatible 12S/12S+16S+18S rRNA reference datasets: 12S-seqs-derep-uniq.qza 12S-tax-derep-uniq.qza 12S-16S-18S-seqs.qza 12S-16S-18S-tax.qza If you use Mitohelper, please cite: Jean Lim, S, Thompson, LR. Mitohelper: A mitochondrial reference sequence analysis tool for fish eDNA studies. Environmental DNA. 2021; 00: 1– 10. https://doi.org/10.1002/edn3.187
Persistent Identifiers
Subjects
free text keywords: eDNA, fish, metabarcoding
Communities
  • European Marine Science
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ZENODO
Dataset . 2022
Providers: ZENODO
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