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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Chengfeng Zhang; Shengyan Su; Xinyuan Li; Bing Li; +3 Authors

    We have created a new, fast-growing strain of common carp with higher unsaturated fatty acid content in muscle. To better understand the impacts of gene regulation in intestinal tissue on growth and unsaturated fatty acid content, we conducted a comparative RNA-Seq transcriptome analysis between intestine samples of Selected and Control groups (and corroborated selected results by PCR). After eight weeks of cage culture, weight gain of the Selected group was 20.84% higher. In muscles of the control group, monounsaturated fatty acids (FAs) were more abundant, whereas polyunsaturated FAs were more abundant in muscles of the Selected group. In total, we found 106 differentially expressed genes (DEGs) between the two groups. Only the endocytosis pathway was significantly enriched in DEGs, with two upregulated genes: il2rb and ehd1. The latter is involved in the growth hormone/insulin-like growth factor (Gh/Igf) axis, which plays a key role in the regulation of growth in animals. tll2, which is known to be associated with intestinal regeneration, was extremely highly upregulated in both transcriptomic (infinite) and qPCR (610.70) analyses. Two of the upregulated genes are associated with the fatty acid metabolism, several genes are likely to be indicators of heightened transcription levels, several are associated with metabolic and developmental roles, several with neuronal functions (including two with vision), several with the immune system, and two downregulated genes with the development of vasculature. The higher growth rate of the Selected group is likely to be at least partially attributed to increased endocytosis efficiency and genetically-driven behavioural differences (higher aggression levels). There are some indications that this new strain might have slightly impaired immune responses, and a higher propensity for inherited diseases leading to sight impairment, as well for neurodegenerative diseases in general, but these indications still need to be confirmed.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Europe PubMed Centra...arrow_drop_down
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    PLoS ONE
    Article . 2018
    Data sources: DOAJ-Articles
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    DOAJ
    Article . 2018
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    PLoS ONE
    Article . 2018 . Peer-reviewed
    License: CC BY
    Data sources: Crossref
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Europe PubMed Centra...arrow_drop_down
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      PLoS ONE
      Article . 2018
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      DOAJ
      Article . 2018
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      PLoS ONE
      Article . 2018 . Peer-reviewed
      License: CC BY
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Zeleny, Reinhard; Nia, Yacine; Schimmel, Heinz; Mutel, Isabelle; +4 Authors

    Staphylococcal enterotoxins (SEs) account for a substantial number of food-poisoning outbreaks. European legislation (Commission Regulation 1441/2007) stipulates the reference procedure for SE analysis in milk and dairy products, which is based on extraction, dialysis concentration and immunochemical detection using one of two approved assays (VIDAS® SET2, Ridascreen® SET Total). However, certified reference materials (CRMs) are lacking to support laboratories in performing reliable detection of Staphylococcus aureus enterotoxin A (SEA) in relevant matrices at sub-nanogram per gram levels. The certification of a set of three reference materials (blank and two SEA-containing materials) for testing of the presence/absence of SEA in cheese is described. The reference procedure was applied in an intercomparison with 15 laboratories, and results were reported in a qualitative manner (presence or absence of SEA in the sample). No false-negative or false-positive results were obtained. The certified values were stated as diagnostic specificity (blank material) or diagnostic sensitivity (SEA-containing materials) and were 100 % in all cases. Stability studies demonstrated suitable material stability when stored cooled or frozen. An in-house study on the recovery of SEA in the cheese materials using a double-sandwich enzyme-linked immunosorbent assay (ELISA) revealed comparable recovery values of around 45 % at the two spiking levels and in both the SEA-containing CRMs as well as blank CRM freshly spiked prior to analysis. The values were also comparable over time and among different analysts. The materials provide valuable support to laboratories for method validation and method performance verification and will increase the reliability of measuring SEA in cheese. Electronic supplementary material The online version of this article (doi:10.1007/s00216-016-9642-5) contains supplementary material, which is available to authorized users.

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    Analytical and Bioanalytical Chemistry
    Article
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    Analytical and Bioanalytical Chemistry
    Article . 2016 . Peer-reviewed
    License: CC BY
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      Analytical and Bioanalytical Chemistry
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      Analytical and Bioanalytical Chemistry
      Article . 2016 . Peer-reviewed
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Durden, J.M.; Lallier, L.E.; Murphy, K.; Jaeckel, A.; +2 Authors

    Environmental Impact Assessment (EIA) is key to the robust environmental management of industrial projects; it is used to anticipate, assess and reduce environmental and social risks of a project. It is instrumental in project planning and execution, and often required for financing and regulatory approval to be granted. The International Seabed Authority currently requires an EIA for deep-sea mining (DSM) in areas beyond national jurisdiction (the Area), but the existing regulations present only a portion of a robust EIA process. This article presents an ideal EIA process for DSM, drawing upon the application of EIA from allied industries. It contains screening, scoping and assessment phases, along with the development of an environmental management plan. It also includes external review by experts, stakeholder consultation, and regulatory review. Lessons learned from application of EIA elsewhere are discussed in relation to DSM, including the integration of EIA into UK domestic law, and the reception of EIAs prepared for seabed ore extraction in the Exclusive Economic Zones of New Zealand and Papua New Guinea. Finally, four main challenges of implementing the EIA process to DSM in the Area are presented: 1) EIA process for DSM needs to incorporate mechanisms to address uncertainty; 2) detailed requirements for the ETA process phases should be made clear; 3) mechanisms are needed to ensure that the EIA influences decision making; and, 4) the ETA process requires substantial input and involvement from the regulator.

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    Authors: Luc Barbaro; Eric Allan; Evy Ampoorter; Bastien Castagneyrol; +15 Authors

    Bats and birds are key providers of ecosystem services in forests. How climate and habitat jointly shape their communities is well studied, but whether biotic predictors from other trophic levels may improve bird and bat diversity models is less known, especially across large bioclimatic gradients. Here, we achieved multi-taxa surveys in 209 mature forests replicated in six European countries from Spain to Finland, to investigate the importance of biotic predictors (i.e. the abundance or activity of defoliating insects, spiders, earthworms and wild ungulates) for bat and bird taxonomic and functional diversity. We found that nine out of 12 bird and bat diversity metrics were best explained when biotic factors were added to models including climate and habitat variables, with a mean gain in explained variance of 38% for birds and 15% for bats. Tree functional diversity was the most important habitat predictor for birds, while bats responded more to understorey structure. The best biotic predictors for birds were spider abundance and defoliating insect activity, while only bat functional evenness responded positively to insect herbivory. Accounting for potential biotic interactions between bats, birds and other taxa of lower trophic levels will help to understand how environmental changes along large biogeographical gradients affect higher-level predator diversity in forest ecosystems.

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    Europe PubMed Central
    Other literature type . 2019
    Data sources: PubMed Central
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    Oskar Bordeaux
    Article . 2019
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    Research@WUR; Proceedings of the Royal Society B Biological Sciences
    Article . 2019 . Peer-reviewed
    License: Royal Society Data Sharing and Accessibility
    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    Research@WUR
    Article . 2019
    Data sources: Research@WUR
    https://doi.org/10.7892/boris....
    Other literature type . 2019
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      Europe PubMed Central
      Other literature type . 2019
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      Oskar Bordeaux
      Article . 2019
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      Research@WUR; Proceedings of the Royal Society B Biological Sciences
      Article . 2019 . Peer-reviewed
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      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
      Research@WUR
      Article . 2019
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      https://doi.org/10.7892/boris....
      Other literature type . 2019
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    Authors: Eynard-bontemps, Guillaume; Abernathey, Ryan; Hamman, Joseph; Ponte, Aurelien; +1 Authors

    Pangeo[1] is a community-driven effort for open-source big data initially focused on the Earth System Sciences. One of its primary goals is to enable scientists in analyzing petascale datasets both on classical high-performance computing (HPC) and on public cloud infrastructure. In only a few years, Pangeo has grown into a very productive community collaborating on the development of open-source analysis tools for science. It provides a set of example deployments based on open-source Scientific Python packages like Jupyter[2], Dask[3], and Xarray[4] that bring together scientists and developer with their actual use-cases. In this paper, we first describe Pangeo ecosystem and community. We then present its impact on the work of scientists from CNES on the HPC deployment there. We conclude with a future outlook for Pangeo in this agency and beyond.

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    Part of book or chapter of book . 2019
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    Authors: Helmuth Thomas; Elizabeth H. Shadwick; Frank Dehairs; Bruno Lansard; +11 Authors

    The seasonal and spatial variability of dissolved Barium (Ba) in the Amundsen Gulf, southeastern Beaufort Sea, was monitored over a full year from September 2007 to September 2008. Dissolved Ba displays a nutrient-type behavior: the maximum water column concentration is located below the surface layer. The highest Ba concentrations are typically observed at river mouths, the lowest concentrations are found in water masses of Atlantic origin. Barium concentrations decrease eastward through the Canadian Arctic Archipelago. Barite (BaSO4) saturation is reached at the maximum dissolved Ba concentrations in the subsurface layer, whereas the rest of the water column is undersaturated. A three end-member mixing model comprising freshwater from sea-ice melt and rivers, as well as upper halocline water, is used to establish their relative contributions to the Ba concentrations in the upper water column of the Amundsen Gulf. Based on water column and riverine Ba contributions, we assess the depletion of dissolved Ba by formation and sinking of biologically bound Ba (bio-Ba), from which we derive an estimate of the carbon export production. In the upper 50 m of the water column of the Amundsen Gulf, riverine Ba accounts for up to 15% of the available dissolved Ba inventory, of which up to 20% is depleted by bio-Ba formation and export. Since riverine inputs and Ba export occur concurrently, the seasonal variability of dissolved Ba in the upper water column is moderate. Assuming a fixed organic carbon to bio-Ba flux ratio, carbon export out of the surface layer is estimated at 1.8 ± 0.45 mol C m‑2 yr‑1. Finally, we propose a climatological carbon budget for the Amundsen Gulf based on recent literature data and our findings, the latter bridging the surface and subsurface water carbon cycles. International audience

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    OceanRep
    Article . 2011 . Peer-reviewed
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    Journal of Geophysical Research Atmospheres
    Article . 2011 . Peer-reviewed
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      OceanRep
      Article . 2011 . Peer-reviewed
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      Journal of Geophysical Research Atmospheres
      Article . 2011 . Peer-reviewed
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    Authors: Stefano Cannicci; Marco Fusi; Filippo Cimò; Farid Dahdouh-Guebas; +1 Authors

    Background: The spatial distribution of mangrove crabs has been commonly associated with tree zonation and abiotic factors such as ground temperature and soil granulometry. Conversely, no studies were designed to investigate the role of competition for resources and predation in shaping crab distribution in mangroves, despite these biotic factors are recognised as key determinants for spatial patterns observed in the communities colonising rocky and sandy intertidal habitats.We studied floral and faunal assemblages in two zones of a Sri Lankan mangrove, a man-made upper intertidal level and a natural eulittoral, mid-shore one. Leaf choice experiments were designed to study both feeding rate and intra and inter-specific interactions for food of sesarmid crabs in the two habitats in order to better understand crab spatial distribution. Results: The two intertidal belts differed in terms of floral composition and crab species abundance. The eulittoral zone was strongly dominated by Neosarmatium smithi, while within the elevated littoral fringe four sesarmids (N. smithi, N. asiaticum, N. malabaricum and Muradium tetragonum) were more evenly distributed. At both levels, all sesarmids showed to collect significantly more Bruguiera spp. and Rhizophora apiculata leaves than Excoecaria agallocha ones. There was no temporal segregation in feeding activity among the four species, resulting in a high interference competition for leaves. Regardless of the habitat, N. smithi was always successful in winning inter-specific fights. Conclusions: Our results showed that the elevated littoral fringe was more crowded with crabs, but was less favourable in terms of food availability and environmental conditions. The dominance of N. smithi in gathering mangrove leaves suggests that this species may segregate the other sesarmids into less favourable habitats. The present data strongly suggest for the first time that interference competition for food can contribute to shape mangrove crab spatial distribution. info:eu-repo/semantics/published SCOPUS: ar.j

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    DI-fusion
    Article . 2018 . Peer-reviewed
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    BMC Ecology
    Article . 2018 . Peer-reviewed
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    BMC Ecology
    Article
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    DOAJ
    Article . 2018
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    BMC Ecology
    Article . 2018
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      DI-fusion
      Article . 2018 . Peer-reviewed
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      BMC Ecology
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      DOAJ
      Article . 2018
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      BMC Ecology
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    Authors: Evelyn Paredes-Coral; Tim Deprez; Melita Mokos; Ann Vanreusel; +2 Authors

    Human activities have put the ocean under unprecedented pressure. Nevertheless, levels of public awareness of ocean issues remain low. Ocean literacy is a global movement that aims to improve the understanding of the ocean and provide an incentive for positive change in people's behaviour. To date, there is no validated scale targeted to adults to measure ocean literacy that includes measuring people's knowledge about the ocean, as well as surveying their attitudes and willingness to act. The Blue Survey, an on -line instrument meant to measure ocean literacy in adult populations, was developed by a multidisciplinary team of experts. Using factor analysis, the present study explores the validity and internal consistency of the Blue Survey in a purposive online sample of 251 adults. We found ocean literacy to consist of six sub-dimensions captured by 34 survey items, viz. knowledge of ocean-related topics, personal interest in ocean-related aspects, ocean stewardship, ocean as an economic resource, ocean-friendly behaviour, and willingness to act responsibly towards the ocean. Our analysis resulted in the development of a new validated instrument to measure the various dimensions of ocean literacy. These results may help researchers and practitioners to better understand the factors which contribute to shaping an ocean-literate person. Further research should be carried out to assess the validity of the Blue Survey across different populations, including those closely related to the sea, such as maritime professionals.

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    Mediterranean Marine Science
    Article . 2021 . Peer-reviewed
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      Mediterranean Marine Science
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    Authors: H. Goelzer; H. Goelzer; H. Goelzer; S. Nowicki; +49 Authors

    Abstract. The Greenland ice sheet is one of the largest contributors to global meansea-level rise today and is expected to continue to lose mass as the Arcticcontinues to warm. The two predominant mass loss mechanisms are increasedsurface meltwater run-off and mass loss associated with the retreat ofmarine-terminating outlet glaciers. In this paper we use a large ensemble ofGreenland ice sheet models forced by output from a representative subset ofthe Coupled Model Intercomparison Project (CMIP5) global climate models to project ice sheet changes and sea-level risecontributions over the 21st century. The simulations are part of theIce Sheet Model Intercomparison Project for CMIP6 (ISMIP6). We estimate thesea-level contribution together with uncertainties due to future climateforcing, ice sheet model formulations and ocean forcing for the twogreenhouse gas concentration scenarios RCP8.5 and RCP2.6. The resultsindicate that the Greenland ice sheet will continue to lose mass in bothscenarios until 2100, with contributions of 90±50 and 32±17 mm to sea-level rise for RCP8.5 and RCP2.6, respectively. The largestmass loss is expected from the south-west of Greenland, which is governed bysurface mass balance changes, continuing what is already observed today.Because the contributions are calculated against an unforced controlexperiment, these numbers do not include any committed mass loss, i.e. massloss that would occur over the coming century if the climate forcingremained constant. Under RCP8.5 forcing, ice sheet model uncertaintyexplains an ensemble spread of 40 mm, while climate model uncertainty andocean forcing uncertainty account for a spread of 36 and 19 mm,respectively. Apart from those formally derived uncertainty ranges, thelargest gap in our knowledge is about the physical understanding andimplementation of the calving process, i.e. the interaction of the ice sheetwith the ocean. info:eu-repo/semantics/published

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    The Cryosphere; The Cryosphere (TC)
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      The Cryosphere; The Cryosphere (TC)
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    Authors: Mees, J.; Fockedey, N.;

    This note reports on the presence of a well established population of the isopod Synidotea laevidorsalis (Miers) in the Gironde estuary (southwestern France). This species is new for the European fauna. S. laevidorsalis is a nonendemic cool-temperate to subtropical, shallow-water species which was probably introduced into the study area from Asia. In the salinity range of 1 to 10 g l-1 of the Gironde the species constitutes an important component of the brackish-water hyperbenthic community. The population was already present in 1975 when it was misidentified as the native species Idotea emarginata (Fabricius).

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    Hydrobiologia
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      Hydrobiologia
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    Authors: Chengfeng Zhang; Shengyan Su; Xinyuan Li; Bing Li; +3 Authors

    We have created a new, fast-growing strain of common carp with higher unsaturated fatty acid content in muscle. To better understand the impacts of gene regulation in intestinal tissue on growth and unsaturated fatty acid content, we conducted a comparative RNA-Seq transcriptome analysis between intestine samples of Selected and Control groups (and corroborated selected results by PCR). After eight weeks of cage culture, weight gain of the Selected group was 20.84% higher. In muscles of the control group, monounsaturated fatty acids (FAs) were more abundant, whereas polyunsaturated FAs were more abundant in muscles of the Selected group. In total, we found 106 differentially expressed genes (DEGs) between the two groups. Only the endocytosis pathway was significantly enriched in DEGs, with two upregulated genes: il2rb and ehd1. The latter is involved in the growth hormone/insulin-like growth factor (Gh/Igf) axis, which plays a key role in the regulation of growth in animals. tll2, which is known to be associated with intestinal regeneration, was extremely highly upregulated in both transcriptomic (infinite) and qPCR (610.70) analyses. Two of the upregulated genes are associated with the fatty acid metabolism, several genes are likely to be indicators of heightened transcription levels, several are associated with metabolic and developmental roles, several with neuronal functions (including two with vision), several with the immune system, and two downregulated genes with the development of vasculature. The higher growth rate of the Selected group is likely to be at least partially attributed to increased endocytosis efficiency and genetically-driven behavioural differences (higher aggression levels). There are some indications that this new strain might have slightly impaired immune responses, and a higher propensity for inherited diseases leading to sight impairment, as well for neurodegenerative diseases in general, but these indications still need to be confirmed.

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      PLoS ONE
      Article . 2018 . Peer-reviewed
      License: CC BY
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    Authors: Zeleny, Reinhard; Nia, Yacine; Schimmel, Heinz; Mutel, Isabelle; +4 Authors

    Staphylococcal enterotoxins (SEs) account for a substantial number of food-poisoning outbreaks. European legislation (Commission Regulation 1441/2007) stipulates the reference procedure for SE analysis in milk and dairy products, which is based on extraction, dialysis concentration and immunochemical detection using one of two approved assays (VIDAS® SET2, Ridascreen® SET Total). However, certified reference materials (CRMs) are lacking to support laboratories in performing reliable detection of Staphylococcus aureus enterotoxin A (SEA) in relevant matrices at sub-nanogram per gram levels. The certification of a set of three reference materials (blank and two SEA-containing materials) for testing of the presence/absence of SEA in cheese is described. The reference procedure was applied in an intercomparison with 15 laboratories, and results were reported in a qualitative manner (presence or absence of SEA in the sample). No false-negative or false-positive results were obtained. The certified values were stated as diagnostic specificity (blank material) or diagnostic sensitivity (SEA-containing materials) and were 100 % in all cases. Stability studies demonstrated suitable material stability when stored cooled or frozen. An in-house study on the recovery of SEA in the cheese materials using a double-sandwich enzyme-linked immunosorbent assay (ELISA) revealed comparable recovery values of around 45 % at the two spiking levels and in both the SEA-containing CRMs as well as blank CRM freshly spiked prior to analysis. The values were also comparable over time and among different analysts. The materials provide valuable support to laboratories for method validation and method performance verification and will increase the reliability of measuring SEA in cheese. Electronic supplementary material The online version of this article (doi:10.1007/s00216-016-9642-5) contains supplementary material, which is available to authorized users.

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    Analytical and Bioanalytical Chemistry
    Article
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    Analytical and Bioanalytical Chemistry
    Article . 2016 . Peer-reviewed
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      Analytical and Bioanalytical Chemistry
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      Analytical and Bioanalytical Chemistry
      Article . 2016 . Peer-reviewed
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    Authors: Durden, J.M.; Lallier, L.E.; Murphy, K.; Jaeckel, A.; +2 Authors

    Environmental Impact Assessment (EIA) is key to the robust environmental management of industrial projects; it is used to anticipate, assess and reduce environmental and social risks of a project. It is instrumental in project planning and execution, and often required for financing and regulatory approval to be granted. The International Seabed Authority currently requires an EIA for deep-sea mining (DSM) in areas beyond national jurisdiction (the Area), but the existing regulations present only a portion of a robust EIA process. This article presents an ideal EIA process for DSM, drawing upon the application of EIA from allied industries. It contains screening, scoping and assessment phases, along with the development of an environmental management plan. It also includes external review by experts, stakeholder consultation, and regulatory review. Lessons learned from application of EIA elsewhere are discussed in relation to DSM, including the integration of EIA into UK domestic law, and the reception of EIAs prepared for seabed ore extraction in the Exclusive Economic Zones of New Zealand and Papua New Guinea. Finally, four main challenges of implementing the EIA process to DSM in the Area are presented: 1) EIA process for DSM needs to incorporate mechanisms to address uncertainty; 2) detailed requirements for the ETA process phases should be made clear; 3) mechanisms are needed to ensure that the EIA influences decision making; and, 4) the ETA process requires substantial input and involvement from the regulator.

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    Authors: Luc Barbaro; Eric Allan; Evy Ampoorter; Bastien Castagneyrol; +15 Authors

    Bats and birds are key providers of ecosystem services in forests. How climate and habitat jointly shape their communities is well studied, but whether biotic predictors from other trophic levels may improve bird and bat diversity models is less known, especially across large bioclimatic gradients. Here, we achieved multi-taxa surveys in 209 mature forests replicated in six European countries from Spain to Finland, to investigate the importance of biotic predictors (i.e. the abundance or activity of defoliating insects, spiders, earthworms and wild ungulates) for bat and bird taxonomic and functional diversity. We found that nine out of 12 bird and bat diversity metrics were best explained when biotic factors were added to models including climate and habitat variables, with a mean gain in explained variance of 38% for birds and 15% for bats. Tree functional diversity was the most important habitat predictor for birds, while bats responded more to understorey structure. The best biotic predictors for birds were spider abundance and defoliating insect activity, while only bat functional evenness responded positively to insect herbivory. Accounting for potential biotic interactions between bats, birds and other taxa of lower trophic levels will help to understand how environmental changes along large biogeographical gradients affect higher-level predator diversity in forest ecosystems.

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    Europe PubMed Central
    Other literature type . 2019
    Data sources: PubMed Central
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    Oskar Bordeaux
    Article . 2019
    Data sources: Oskar Bordeaux
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    Research@WUR; Proceedings of the Royal Society B Biological Sciences
    Article . 2019 . Peer-reviewed
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    Research@WUR
    Article . 2019
    Data sources: Research@WUR
    https://doi.org/10.7892/boris....
    Other literature type . 2019
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      Oskar Bordeaux
      Article . 2019
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      Research@WUR; Proceedings of the Royal Society B Biological Sciences
      Article . 2019 . Peer-reviewed
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      Research@WUR
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      https://doi.org/10.7892/boris....
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    Authors: Eynard-bontemps, Guillaume; Abernathey, Ryan; Hamman, Joseph; Ponte, Aurelien; +1 Authors

    Pangeo[1] is a community-driven effort for open-source big data initially focused on the Earth System Sciences. One of its primary goals is to enable scientists in analyzing petascale datasets both on classical high-performance computing (HPC) and on public cloud infrastructure. In only a few years, Pangeo has grown into a very productive community collaborating on the development of open-source analysis tools for science. It provides a set of example deployments based on open-source Scientific Python packages like Jupyter[2], Dask[3], and Xarray[4] that bring together scientists and developer with their actual use-cases. In this paper, we first describe Pangeo ecosystem and community. We then present its impact on the work of scientists from CNES on the HPC deployment there. We conclude with a future outlook for Pangeo in this agency and beyond.

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    Authors: Helmuth Thomas; Elizabeth H. Shadwick; Frank Dehairs; Bruno Lansard; +11 Authors

    The seasonal and spatial variability of dissolved Barium (Ba) in the Amundsen Gulf, southeastern Beaufort Sea, was monitored over a full year from September 2007 to September 2008. Dissolved Ba displays a nutrient-type behavior: the maximum water column concentration is located below the surface layer. The highest Ba concentrations are typically observed at river mouths, the lowest concentrations are found in water masses of Atlantic origin. Barium concentrations decrease eastward through the Canadian Arctic Archipelago. Barite (BaSO4) saturation is reached at the maximum dissolved Ba concentrations in the subsurface layer, whereas the rest of the water column is undersaturated. A three end-member mixing model comprising freshwater from sea-ice melt and rivers, as well as upper halocline water, is used to establish their relative contributions to the Ba concentrations in the upper water column of the Amundsen Gulf. Based on water column and riverine Ba contributions, we assess the depletion of dissolved Ba by formation and sinking of biologically bound Ba (bio-Ba), from which we derive an estimate of the carbon export production. In the upper 50 m of the water column of the Amundsen Gulf, riverine Ba accounts for up to 15% of the available dissolved Ba inventory, of which up to 20% is depleted by bio-Ba formation and export. Since riverine inputs and Ba export occur concurrently, the seasonal variability of dissolved Ba in the upper water column is moderate. Assuming a fixed organic carbon to bio-Ba flux ratio, carbon export out of the surface layer is estimated at 1.8 ± 0.45 mol C m‑2 yr‑1. Finally, we propose a climatological carbon budget for the Amundsen Gulf based on recent literature data and our findings, the latter bridging the surface and subsurface water carbon cycles. International audience

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    OceanRep
    Article . 2011 . Peer-reviewed
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    Journal of Geophysical Research Atmospheres
    Article . 2011 . Peer-reviewed
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      Journal of Geophysical Research Atmospheres
      Article . 2011 . Peer-reviewed
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    Authors: Stefano Cannicci; Marco Fusi; Filippo Cimò; Farid Dahdouh-Guebas; +1 Authors

    Background: The spatial distribution of mangrove crabs has been commonly associated with tree zonation and abiotic factors such as ground temperature and soil granulometry. Conversely, no studies were designed to investigate the role of competition for resources and predation in shaping crab distribution in mangroves, despite these biotic factors are recognised as key determinants for spatial patterns observed in the communities colonising rocky and sandy intertidal habitats.We studied floral and faunal assemblages in two zones of a Sri Lankan mangrove, a man-made upper intertidal level and a natural eulittoral, mid-shore one. Leaf choice experiments were designed to study both feeding rate and intra and inter-specific interactions for food of sesarmid crabs in the two habitats in order to better understand crab spatial distribution. Results: The two intertidal belts differed in terms of floral composition and crab species abundance. The eulittoral zone was strongly dominated by Neosarmatium smithi, while within the elevated littoral fringe four sesarmids (N. smithi, N. asiaticum, N. malabaricum and Muradium tetragonum) were more evenly distributed. At both levels, all sesarmids showed to collect significantly more Bruguiera spp. and Rhizophora apiculata leaves than Excoecaria agallocha ones. There was no temporal segregation in feeding activity among the four species, resulting in a high interference competition for leaves. Regardless of the habitat, N. smithi was always successful in winning inter-specific fights. Conclusions: Our results showed that the elevated littoral fringe was more crowded with crabs, but was less favourable in terms of food availability and environmental conditions. The dominance of N. smithi in gathering mangrove leaves suggests that this species may segregate the other sesarmids into less favourable habitats. The present data strongly suggest for the first time that interference competition for food can contribute to shape mangrove crab spatial distribution. info:eu-repo/semantics/published SCOPUS: ar.j

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    DI-fusion
    Article . 2018 . Peer-reviewed
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    BMC Ecology
    Article . 2018 . Peer-reviewed
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    BMC Ecology
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    DOAJ
    Article . 2018
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    BMC Ecology
    Article . 2018
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      DI-fusion
      Article . 2018 . Peer-reviewed
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      BMC Ecology
      Article . 2018 . Peer-reviewed
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      BMC Ecology
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      DOAJ
      Article . 2018
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      BMC Ecology
      Article . 2018
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    Authors: Evelyn Paredes-Coral; Tim Deprez; Melita Mokos; Ann Vanreusel; +2 Authors

    Human activities have put the ocean under unprecedented pressure. Nevertheless, levels of public awareness of ocean issues remain low. Ocean literacy is a global movement that aims to improve the understanding of the ocean and provide an incentive for positive change in people's behaviour. To date, there is no validated scale targeted to adults to measure ocean literacy that includes measuring people's knowledge about the ocean, as well as surveying their attitudes and willingness to act. The Blue Survey, an on -line instrument meant to measure ocean literacy in adult populations, was developed by a multidisciplinary team of experts. Using factor analysis, the present study explores the validity and internal consistency of the Blue Survey in a purposive online sample of 251 adults. We found ocean literacy to consist of six sub-dimensions captured by 34 survey items, viz. knowledge of ocean-related topics, personal interest in ocean-related aspects, ocean stewardship, ocean as an economic resource, ocean-friendly behaviour, and willingness to act responsibly towards the ocean. Our analysis resulted in the development of a new validated instrument to measure the various dimensions of ocean literacy. These results may help researchers and practitioners to better understand the factors which contribute to shaping an ocean-literate person. Further research should be carried out to assess the validity of the Blue Survey across different populations, including those closely related to the sea, such as maritime professionals.

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    Mediterranean Marine Science
    Article . 2021 . Peer-reviewed
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      Mediterranean Marine Science
      Article . 2021 . Peer-reviewed
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    Authors: H. Goelzer; H. Goelzer; H. Goelzer; S. Nowicki; +49 Authors

    Abstract. The Greenland ice sheet is one of the largest contributors to global meansea-level rise today and is expected to continue to lose mass as the Arcticcontinues to warm. The two predominant mass loss mechanisms are increasedsurface meltwater run-off and mass loss associated with the retreat ofmarine-terminating outlet glaciers. In this paper we use a large ensemble ofGreenland ice sheet models forced by output from a representative subset ofthe Coupled Model Intercomparison Project (CMIP5) global climate models to project ice sheet changes and sea-level risecontributions over the 21st century. The simulations are part of theIce Sheet Model Intercomparison Project for CMIP6 (ISMIP6). We estimate thesea-level contribution together with uncertainties due to future climateforcing, ice sheet model formulations and ocean forcing for the twogreenhouse gas concentration scenarios RCP8.5 and RCP2.6. The resultsindicate that the Greenland ice sheet will continue to lose mass in bothscenarios until 2100, with contributions of 90±50 and 32±17 mm to sea-level rise for RCP8.5 and RCP2.6, respectively. The largestmass loss is expected from the south-west of Greenland, which is governed bysurface mass balance changes, continuing what is already observed today.Because the contributions are calculated against an unforced controlexperiment, these numbers do not include any committed mass loss, i.e. massloss that would occur over the coming century if the climate forcingremained constant. Under RCP8.5 forcing, ice sheet model uncertaintyexplains an ensemble spread of 40 mm, while climate model uncertainty andocean forcing uncertainty account for a spread of 36 and 19 mm,respectively. Apart from those formally derived uncertainty ranges, thelargest gap in our knowledge is about the physical understanding andimplementation of the calving process, i.e. the interaction of the ice sheetwith the ocean. info:eu-repo/semantics/published

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    DI-fusion
    Article . 2020 . Peer-reviewed
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    St Andrews Research Repository
    Article . 2020 . Peer-reviewed
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    The Cryosphere
    Article . 2020
    Data sources: NARCIS
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    The Cryosphere (TC)
    Article . 2020
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    https://doi.org/10.5194/tc-201...
    Preprint . 2020
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    Authors: Mees, J.; Fockedey, N.;

    This note reports on the presence of a well established population of the isopod Synidotea laevidorsalis (Miers) in the Gironde estuary (southwestern France). This species is new for the European fauna. S. laevidorsalis is a nonendemic cool-temperate to subtropical, shallow-water species which was probably introduced into the study area from Asia. In the salinity range of 1 to 10 g l-1 of the Gironde the species constitutes an important component of the brackish-water hyperbenthic community. The population was already present in 1975 when it was misidentified as the native species Idotea emarginata (Fabricius).

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