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  • European Marine Science
  • 2022-2022

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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: De Casamajor, Marie-noelle; Sartoretto, Stephane; Gouillieux, Benoît; Saint Germain, Annaëlle; +4 Authors

    Ce rapport présente un bilan des résultats obtenus à partir des données récoltées au cours des projets Circareef et Circatax sur les habitats circalittoraux d’intérêt de la zone N2000 « côte basque rocheuse et extension au large ». Ces résultats montrent un intérêt écologique et biogéographique remarquable des sites prospectés avec des habitats abritant une biodiversité originale non connue. L’analyse des prélèvements réalisés et l’identification des taxons présents confortent ces observations. En parallèle, les résultats d’un indice basé sur une approche écosystémique Ecosystem-Based Quality Index (EBQI) sont présentés. à partir de ce bilan, des orientations sont déterminées pour approfondir la connaissance de ces habitats remarquables dans le contexte des directives européennes de conservation. This report presents the results obtained from the data collected during the Circareef and Circatax projects on the circalittoral habitats of interest in the N2000 zone "rocky Basque coast and offshore extension". These results show a remarkable ecological and biogeographical interest of the prospected sites with habitats sheltering an unknown original biodiversity. The analysis of the samples taken and the identification of the taxa collected confirm these observations. In parallel, calculations of an index based on an Ecosystem-Based Quality Index (EBQI) ecosystem approach are presented. From this report, orientations are determined to improve the knowledge of these remarkable habitats in the context of European directives of conservation.

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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ArchiMer - Instituti...arrow_drop_down
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  • image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    Authors: Huang, S. H.; Thybo, H.; Dong, S. W.; Artemieva, Irina M.; +4 Authors

    The Ordos Block in the western part of the North China Craton is enigmatic in having contrasting topographic structure in the northern and southern parts, while previous geophysical studies show little difference in crustal and upper mantle structure across the region. Here we present a new model of upper mantle structure in the Ordos Block region in order to test the importance of mantle heterogeneity for topographic differences. Our model is based on P- and S-wave seismic receiver functions calculated for data from 171 stations. It documents the presence of an uppermost mantle low-velocity zone between the Mid Lithospheric Discontinuity (MLD) and the Lehmann discontinuity. Clear converters at the 410 and 660 km discontinuities show constant Mantle Transition Zone (MTZ) thickness within the Ordos Block region, which indicates that no deep mantle thermal anomaly affects its present dynamics. However, the amplitude of the MTZ-converters is higher in the southern than the northern Ordos Block. In contrast, the conversions from MLD and the Lehmann discontinuity are strongest in Northern Ordos, which we interpret as a block with essentially preserved cratonic lithospheric mantle. We speculate that smaller amplitudes of the MLD and Lehmann converters in Southern than Northern Ordos may be related to either rheological weakening of cratonic lithosphere during the Mesozoic convergence between the North and South (Yangtze) China Cratons, or northeast extrusion of Tibetan lower crust and upper mantle in the Cenozoic caused by the India-Asia collision.

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    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao OceanRep; Journal of...arrow_drop_down
      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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    Authors: Micallef, Aaron; Saadatkhah, Nader; Spiteri, Jurgen; Rizzo, Enzo; +7 Authors

    Groundwater seepage leads to the formation of theater-headed valleys (THVs) in unconsolidated sediments. In bedrock, the role of groundwater in THV development remains disputed. Here, we integrate field and remote-sensing observations from Gnejna Valley (Maltese Islands) with numerical modeling to demonstrate that groundwater seepage can be the main driver of THV formation in jointed limestone overlying clays. The inferred erosion mechanisms entail (1) widening of joints and fractures by fluid pressure and dissolution and (2) creeping of an underlying clay layer, which lead to slope failure at the valley head and its upslope retreat. The latter is slower than the removal of the talus by creep and sliding on the valley bed. The location and width of THVs are controlled by the location of the master fault and the extent of the damage zone, respectively. The variability of seepage across the fault zone determines the shape of the valley head, with an exponential decrease in seepage away from the fault giving rise to a theater-shaped head that best matches that of Gnejna Valley. Our model may explain the formation of THVs by groundwater in jointed, strong-over-weak chemical sedimentary lithologies, particularly in arid terrestrial settings. peer-reviewed

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    OAR@UM
    Article . 2022 . Peer-reviewed
    Data sources: OAR@UM
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      OAR@UM
      Article . 2022 . Peer-reviewed
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    Authors: Mengqi Wang; Qichao Tu; Qichao Tu; Qichao Tu; +1 Authors

    Microorganisms do not exist as individual population in the environment. Rather, they form complex assemblages that perform essential ecosystem functions and maintain ecosystem stability. Besides the diversity and composition of microbial communities, deciphering their potential interactions in the form of association networks has attracted many microbiologists and ecologists. Much effort has been made toward the methodological development for constructing microbial association networks. However, microbial profiles suffer dramatically from zero values, which hamper accurate association network construction. In this study, we investigated the effects of zero-value issues associated with microbial association network construction. Using the TARA Oceans microbial profile as an example, different zero-value-treatment approaches were comparatively investigated using different correlation methods. The results suggested dramatic variations of correlation coefficient values for differently treated microbial profiles. Most specifically, correlation coefficients among less frequent microbial taxa were more affected, whichever method was used. Negative correlation coefficients were more problematic and sensitive to network construction, as many of them were inferred from low-overlapped microbial taxa. Consequently, microbial association networks were greatly differed. Among various approaches, we recommend sequential calculation of correlation coefficients for microbial taxa pairs by excluding paired zero values. Filling missing values with pseudo-values is not recommended. As microbial association network analyses have become a widely used technique in the field of microbial ecology and environmental science, we urge cautions be made to critically consider the zero-value issues in microbial data.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Frontiers in Microbi...arrow_drop_down
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    Frontiers in Microbiology
    Article . 2022
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    Frontiers in Microbiology
    Article . 2022 . Peer-reviewed
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Frontiers in Microbi...arrow_drop_down
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      Frontiers in Microbiology
      Article . 2022
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      Frontiers in Microbiology
      Article . 2022 . Peer-reviewed
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    Authors: A. P. Lepp; L. M. Simkins; J. B. Anderson; R. W. Clark; +10 Authors

    Subglacial meltwater drainage can enhance localized melting along grounding zones and beneath the ice shelves of marine-terminating glaciers. Efforts to constrain the evolution of subglacial hydrology and the resulting influence on ice stability in space and on decadal to millennial timescales are lacking. Here, we apply sedimentological, geochemical, and statistical methods to analyze sediment cores recovered offshore Thwaites Glacier, West Antarctica to reconstruct meltwater drainage activity through the pre-satellite era. We find evidence for a long-lived subglacial hydrologic system beneath Thwaites Glacier and indications that meltwater plumes are the primary mechanism of sedimentation seaward of the glacier today. Detailed core stratigraphy revealed through computed tomography scanning captures variability in drainage styles and suggests greater magnitudes of sediment-laden meltwater have been delivered to the ocean in recent centuries compared to the past several thousand years. Fundamental similarities between meltwater plume deposits offshore Thwaites Glacier and those described in association with other Antarctic glacial systems imply widespread and similar subglacial hydrologic processes that occur independently of subglacial geology. In the context of Holocene changes to the Thwaites Glacier margin, it is likely that subglacial drainage enhanced submarine melt along the grounding zone and amplified ice-shelf melt driven by oceanic processes, consistent with observations of other West Antarctic glaciers today. This study highlights the necessity of accounting for the influence of subglacial hydrology on grounding-zone and ice-shelf melt in projections of future behavior of the Thwaites Glacier ice margin and marine-based glaciers around the Antarctic continent. Frontiers in Earth Science, 10 ISSN:2296-6463

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    Frontiers in Earth Science
    Article . 2022
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    Frontiers in Earth Science
    Article . 2022 . Peer-reviewed
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    Research Collection
    Article . 2022
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      Frontiers in Earth Science
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      Frontiers in Earth Science
      Article . 2022 . Peer-reviewed
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    Authors: Chaffron, Samuel; Linkowski, Thomas; Couet, Douglas; Becker, Erica; +1 Authors

    Mission Microbiomes Leg 8 took place between Salvador de Bahia and Rio de Janeiro, Brazil. It corresponded to the first AtlantECO “Biodiscovery” leg, the first case Study on "Molecular Bioprospecting" of the mission. The two principal objectives of this leg were 1) to augment plankton biodiversity discovery through replicated omics samplings, and 2) to enable the potential discovery of new bioproducts & chemicals for industrial applications with high socio-economic value, such as new ways to produce pharmaceutical products or natural enzymes able to digest complex molecules such as pollutants or plastics. Given the bioprospecting focus of this leg, sampling stations were all located within international waters, along the Vitória-Trindade Chain (VTC) consisting of 11 heterogeneous seamounts. Due to this location, an additional objective of this leg was 3) to produce samples potentially also valuable for the H2020 EU-funded All-Atlantic sister project iAtlantic (Integrated Assessment of Atlantic Marine Ecosystems in Space and Time), which overall goal is to measure the impact of climate change on the Atlantic, and notably on deep-sea corals of the VTC seamounts. In line with these objectives, the main questions we wish to address are: a) Are we under-sampling the functional and taxonomic biodiversity of marine microbiomes? What are the “rare” species? (Is everything everywhere?); b) What is the nutrient/light dynamics of a DCM? Is the DCM a vertically homogeneous feature or is it made of vertically separated niches? and c) What are the pelagic microbiomes associated with deep coral reefs? Can we characterize the vertical connectivity between the pelagic microbiomes and deep-sea corals (e.g., downward export of organic matter, using a genomic signature)? What is the survival of coral larvae in the pelagic ecosystem?

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    Authors: M. Lizotte; B. Juhls; B. Juhls; B. Juhls; +52 Authors

    Climate warming and related drivers of soil thermal change in the Arctic are expected to modify the distribution and dynamics of carbon contained in perennially frozen grounds. Thawing of permafrost in the Mackenzie Delta region of northwestern Canada, coupled with increases in river discharge and coastal erosion, trigger the release of terrestrial organic matter (OMt) from the largest Arctic drainage basin in North America into the Arctic Ocean. While this process is ongoing, well-established, and its rate is accelerating, the fate of the newly-mobilized organic matter, as it transits from the watershed through the delta and into the marine system, remains poorly understood. In the framework of the European Horizon 2020 Nunataryuk programme, and as part of the Work Package 4 (WP4) Coastal Waters theme, four field expeditions were conducted in the Mackenzie Delta region and southern Beaufort Sea from April to September 2019. The temporal sampling design allowed the survey of ambient conditions in the coastal waters under full ice cover prior to the spring freshet, during ice break-up in summer, as well as anterior to the freeze-up period in fall. To capture the fluvial-marine transition zone, and with distinct challenges related to shallow waters and changing seasonal and meteorological conditions, the field sampling was conducted in close partnership with members of the communities of Aklavik, Inuvik and Tuktoyaktuk, using several platforms: helicopters, snowmobiles and small boats. Water column profiles of physical and optical variables were measured in situ, while surface water, groundwater and sediment samples were collected and preserved for the determination of the composition and sources of OMt, including particulate and dissolved organic carbon (POC, DOC), and chromophoric dissolved organic matter (CDOM), as well as a suite of physical, chemical and biological variables. Here we present an overview of the standardized datasets, including hydrographic profiles, remote sensing reflectance, temperature and salinity, particle absorption, nutrients, dissolved organic carbon, particulate organic carbon, particulate organic nitrogen, colored dissolved organic matter absorption, fluorescent dissolved organic matter intensity, suspended particulate matter, total particulate carbon, total particulate nitrogen, stable water isotopes, radon in water, bacterial abundance, and a string of phytoplankton pigments including total chlorophyll. Datasets and related metadata can be found in Juhls et al. 2021. https://doi.pangaea.de/10.1594/PANGAEA.937587.

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    https://doi.org/10.5194/essd-2...
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      https://doi.org/10.5194/essd-2...
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    Authors: Fiandrino, Annie; Cimiterra, Nicolas; Giraud, Anaïs; Stroffek, Stéphane;

    Le modèle GAMELag est un outil d’analyse et de compréhension du fonctionnement des écosystèmes lagunaires eutrophisés et d’aide à la décision pour tester des actions/aménagements en vue de leur restauration. Des travaux antérieurs ont mis à jour des limites d’utilisation de l’outil, notamment vis-à-vis de la conceptualisation trop simpliste des herbiers à zostère qui, avec les algues opportunistes vertes et rouges, constituent les 3 groupes fonctionnels pris en compte dans le modèle. Les processus d’assimilation des nutriments stockés dans le compartiment sédimentaire par le système racinaire de l’herbier n’étant pas pris en compte dans le modèle, la croissance simulée de l’herbier est fortement sous-estimée. De ce fait, le modèle est dans l’incapacité d’estimer l’état du compartiment « Macrophyte » à partir des indicateurs DCE. La présente étude a pour objectif de statuer sur la nécessité/pertinence d’affiner la formalisation des processus de croissance de l’herbier au sein du modèle. Dans un objectif de recherche des flux admissibles, il n’apparait pas nécessaire de reproduire finement l’évolution des herbiers. En revanche, il est nécessaire et suffisant que le modèle soit capable d’établir les liens entre les pressions anthropiques qui s’exercent sur l’écosystème et les conditions environnementales favorables au développement des herbiers (productions primaire et de macroalgues limitées compatibles avec des conditions de lumière suffisante pour le développement de l’herbier). Dans ce contexte, un indicateur de non-prolifération des espèces opportunistes a été recherché à partir de l’analyse des données de biomasse de macrophytes, acquises sur 13 lagunes occitanes entre 2001 et 2006 dans le cadre des diagnostics « Macrophyte-RSL ». Les principales conclusions de cette étude sont les suivantes : • la prise en compte, au sein du modèle, des deux groupes fonctionnels opportunistes des algues vertes et rouges est suffisante pour évaluer l’état du compartiment « Macrophyte » dans la mesure où elle aboutit à une évaluation correcte des stations en état « Médiocre » ou « Mauvais » dans plus de 90% des cas, • l’analyse des distributions de biomasse sur les stations où les algues vertes sont dominantes a permis de proposer un seuil de non-prolifération de l’ordre de 80 gPS.m-2 pour ce groupe fonctionnel. En revanche, la probabilité non négligeable d’observer de faibles biomasses d’algues rouges dans des états « Médiocre à Mauvais » ne permet pas de proposer un seuil de non-prolifération pour ce groupe fonctionnel. • des plages de valeurs de biomasse d‘algues opportunistes, en distinguant ou non les deux groupes fonctionnels, ont été estimées en fonction de l’état du compartiment « Macrophyte ». Celles-ci pourront dorénavant être utilisées, lors de la phase d’optimisation des paramètres du modèle, pour contraindre la production simulée d’algues opportunistes en fonction de l’état d’eutrophisation global de la lagune.

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    Authors: Andreas Crivellin; Luc Schnell;

    Leptoquarks (LQs) have attracted increasing attention within recent years, mainly since they can explain the flavor anomalies found in R(D(⁎)), b→sℓ+ℓ− transitions and the anomalous magnetic moment of the muon. In this article, we lay the groundwork for further automated analyses by presenting the complete Lagrangian and the corresponding set of Feynman rules for scalar leptoquarks. This means we consider the five representations Φ1,Φ1˜,Φ2,Φ2˜ and Φ3 and include the triple and quartic self-interactions, as well as couplings to the Standard Model (SM) fermions, gauge bosons and the Higgs. The calculations are performed using FeynRules and all model files are publicly available online at https://gitlab.com/lucschnell/SLQrules. Program Title: SLQrules CPC Library link to program files:https://doi.org/10.17632/sf8s89rhmv.1 Developer's repository link:https://gitlab.com/lucschnell/SLQrules Licensing provisions: CC By 4.0 Programming language: Mathematica, FeynRules Nature of problem: In order to explain the deviations from SM predictions in R(D(⁎)), b→ℓ+ℓ− transitions and the muon AMM jointly, models involving multiple LQ representations are necessary. This significantly increases the number of possible interactions and creates the need for computational tools that allow for studying the phenomenology of these LQ models in an automated manner. While model files exist for each LQ representation individually [1], we are not aware of any publicly available model files that combine all scalar LQ representations as well as their self-interactions. Solution method: We implemented the complete scalar LQ Lagrangian in a FeynRules [2] model file and provide the corresponding MOD and UFO model files. These can be imported directly in FeynArts [3] and MadGraph [4] to obtain a versatile toolbox for the study of scalar LQs. [1]I. Doršner, A. Greljo, J. High Energy Phys. 05 (2018) 1-21.[2]A. Alloul, et al. Comput. Phys. Commun. 185 (2014) 2250-2300.[3]T. Hahn, Comput. Phys. Commun. 140 (2001) 418-431.[4]J. Alwall, et al., J. High Energy Phys. 07 (2014) 079. Leptoquarks (LQs) have attracted increasing attention within recent years, mainly since they can explain the flavor anomalies found in $R(D^{(*)})$, $b \rightarrow s \ell^+ \ell^-$ transitions and the anomalous magnetic moment of the muon. In this article, we lay the groundwork for further automated analyses by presenting the complete Lagrangian and the corresponding set of Feynman rules for scalar leptoquarks. This means we consider the five representations $\Phi_1, \Phi_{\tilde1}, \Phi_2, \Phi_{\tilde2}$ and $\Phi_3$ and include the triple and quartic self-interactions, as well as couplings to the Standard Model (SM) fermions, gauge bosons and the Higgs. The calculations are performed using FeynRules and all model files are publicly available online at https://gitlab.com/lucschnell/SLQrules.

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    Other literature type . Preprint . 2021
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    Computer Physics Communications
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    https://doi.org/10.48550/arxiv...
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      Computer Physics Communications
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      https://doi.org/10.48550/arxiv...
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    Authors: Nariman Amirgalievich Amirgaliev; Maulken Askarova; Christian Opp; Alikhan Medeu; +2 Authors

    Both the insufficiency of water resources and the contamination of even transboundary water bodies are serious problems. Water quality analyses of the transboundary (between Russia and Kazakhstan) Ural River and the Kazakh sector of the Caspian Sea, and their assessment are the main research questions of this study. It is shown that the Ural River is heavily contaminated by polychlorinated biphenyls, heavy metals, oil contaminants, and pesticides, arising from industrial enterprises and agricultural objects. The results show that these toxicants are not only present in water, but they are also accumulated in the muscular tissues of all fish (Abramis brama, Sander lucioperca, Aspius aspius). The Caspian Sea is heavily contaminated by petroleum hydrocarbons due to off shore oil production. A sufficiently high level of accumulation of petroleum hydrocarbons, organochlorine pesticides and heavy metals was determined in the muscles of Caspian fish. All these contaminations lead to the loss of biodiversity and bio-productivity of the Caspian Sea. The authors propose a methodology for a quantitative assessment of the environmental safety level in relation to the Kazakh part of the Caspian Sea, based on bioindication methods. Recommendations, aimed for maintaining acceptable values of water resources quality, are suggested.

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    Applied Sciences
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    Applied Sciences
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: De Casamajor, Marie-noelle; Sartoretto, Stephane; Gouillieux, Benoît; Saint Germain, Annaëlle; +4 Authors

    Ce rapport présente un bilan des résultats obtenus à partir des données récoltées au cours des projets Circareef et Circatax sur les habitats circalittoraux d’intérêt de la zone N2000 « côte basque rocheuse et extension au large ». Ces résultats montrent un intérêt écologique et biogéographique remarquable des sites prospectés avec des habitats abritant une biodiversité originale non connue. L’analyse des prélèvements réalisés et l’identification des taxons présents confortent ces observations. En parallèle, les résultats d’un indice basé sur une approche écosystémique Ecosystem-Based Quality Index (EBQI) sont présentés. à partir de ce bilan, des orientations sont déterminées pour approfondir la connaissance de ces habitats remarquables dans le contexte des directives européennes de conservation. This report presents the results obtained from the data collected during the Circareef and Circatax projects on the circalittoral habitats of interest in the N2000 zone "rocky Basque coast and offshore extension". These results show a remarkable ecological and biogeographical interest of the prospected sites with habitats sheltering an unknown original biodiversity. The analysis of the samples taken and the identification of the taxa collected confirm these observations. In parallel, calculations of an index based on an Ecosystem-Based Quality Index (EBQI) ecosystem approach are presented. From this report, orientations are determined to improve the knowledge of these remarkable habitats in the context of European directives of conservation.

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    Authors: Huang, S. H.; Thybo, H.; Dong, S. W.; Artemieva, Irina M.; +4 Authors

    The Ordos Block in the western part of the North China Craton is enigmatic in having contrasting topographic structure in the northern and southern parts, while previous geophysical studies show little difference in crustal and upper mantle structure across the region. Here we present a new model of upper mantle structure in the Ordos Block region in order to test the importance of mantle heterogeneity for topographic differences. Our model is based on P- and S-wave seismic receiver functions calculated for data from 171 stations. It documents the presence of an uppermost mantle low-velocity zone between the Mid Lithospheric Discontinuity (MLD) and the Lehmann discontinuity. Clear converters at the 410 and 660 km discontinuities show constant Mantle Transition Zone (MTZ) thickness within the Ordos Block region, which indicates that no deep mantle thermal anomaly affects its present dynamics. However, the amplitude of the MTZ-converters is higher in the southern than the northern Ordos Block. In contrast, the conversions from MLD and the Lehmann discontinuity are strongest in Northern Ordos, which we interpret as a block with essentially preserved cratonic lithospheric mantle. We speculate that smaller amplitudes of the MLD and Lehmann converters in Southern than Northern Ordos may be related to either rheological weakening of cratonic lithosphere during the Mesozoic convergence between the North and South (Yangtze) China Cratons, or northeast extrusion of Tibetan lower crust and upper mantle in the Cenozoic caused by the India-Asia collision.

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    Authors: Micallef, Aaron; Saadatkhah, Nader; Spiteri, Jurgen; Rizzo, Enzo; +7 Authors

    Groundwater seepage leads to the formation of theater-headed valleys (THVs) in unconsolidated sediments. In bedrock, the role of groundwater in THV development remains disputed. Here, we integrate field and remote-sensing observations from Gnejna Valley (Maltese Islands) with numerical modeling to demonstrate that groundwater seepage can be the main driver of THV formation in jointed limestone overlying clays. The inferred erosion mechanisms entail (1) widening of joints and fractures by fluid pressure and dissolution and (2) creeping of an underlying clay layer, which lead to slope failure at the valley head and its upslope retreat. The latter is slower than the removal of the talus by creep and sliding on the valley bed. The location and width of THVs are controlled by the location of the master fault and the extent of the damage zone, respectively. The variability of seepage across the fault zone determines the shape of the valley head, with an exponential decrease in seepage away from the fault giving rise to a theater-shaped head that best matches that of Gnejna Valley. Our model may explain the formation of THVs by groundwater in jointed, strong-over-weak chemical sedimentary lithologies, particularly in arid terrestrial settings. peer-reviewed

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    OAR@UM
    Article . 2022 . Peer-reviewed
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    Authors: Mengqi Wang; Qichao Tu; Qichao Tu; Qichao Tu; +1 Authors

    Microorganisms do not exist as individual population in the environment. Rather, they form complex assemblages that perform essential ecosystem functions and maintain ecosystem stability. Besides the diversity and composition of microbial communities, deciphering their potential interactions in the form of association networks has attracted many microbiologists and ecologists. Much effort has been made toward the methodological development for constructing microbial association networks. However, microbial profiles suffer dramatically from zero values, which hamper accurate association network construction. In this study, we investigated the effects of zero-value issues associated with microbial association network construction. Using the TARA Oceans microbial profile as an example, different zero-value-treatment approaches were comparatively investigated using different correlation methods. The results suggested dramatic variations of correlation coefficient values for differently treated microbial profiles. Most specifically, correlation coefficients among less frequent microbial taxa were more affected, whichever method was used. Negative correlation coefficients were more problematic and sensitive to network construction, as many of them were inferred from low-overlapped microbial taxa. Consequently, microbial association networks were greatly differed. Among various approaches, we recommend sequential calculation of correlation coefficients for microbial taxa pairs by excluding paired zero values. Filling missing values with pseudo-values is not recommended. As microbial association network analyses have become a widely used technique in the field of microbial ecology and environmental science, we urge cautions be made to critically consider the zero-value issues in microbial data.

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    Frontiers in Microbiology
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    Frontiers in Microbiology
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      Frontiers in Microbiology
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    Authors: A. P. Lepp; L. M. Simkins; J. B. Anderson; R. W. Clark; +10 Authors

    Subglacial meltwater drainage can enhance localized melting along grounding zones and beneath the ice shelves of marine-terminating glaciers. Efforts to constrain the evolution of subglacial hydrology and the resulting influence on ice stability in space and on decadal to millennial timescales are lacking. Here, we apply sedimentological, geochemical, and statistical methods to analyze sediment cores recovered offshore Thwaites Glacier, West Antarctica to reconstruct meltwater drainage activity through the pre-satellite era. We find evidence for a long-lived subglacial hydrologic system beneath Thwaites Glacier and indications that meltwater plumes are the primary mechanism of sedimentation seaward of the glacier today. Detailed core stratigraphy revealed through computed tomography scanning captures variability in drainage styles and suggests greater magnitudes of sediment-laden meltwater have been delivered to the ocean in recent centuries compared to the past several thousand years. Fundamental similarities between meltwater plume deposits offshore Thwaites Glacier and those described in association with other Antarctic glacial systems imply widespread and similar subglacial hydrologic processes that occur independently of subglacial geology. In the context of Holocene changes to the Thwaites Glacier margin, it is likely that subglacial drainage enhanced submarine melt along the grounding zone and amplified ice-shelf melt driven by oceanic processes, consistent with observations of other West Antarctic glaciers today. This study highlights the necessity of accounting for the influence of subglacial hydrology on grounding-zone and ice-shelf melt in projections of future behavior of the Thwaites Glacier ice margin and marine-based glaciers around the Antarctic continent. Frontiers in Earth Science, 10 ISSN:2296-6463

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    Frontiers in Earth Science
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    Frontiers in Earth Science
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    Research Collection
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      Frontiers in Earth Science
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      Frontiers in Earth Science
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    Authors: Chaffron, Samuel; Linkowski, Thomas; Couet, Douglas; Becker, Erica; +1 Authors

    Mission Microbiomes Leg 8 took place between Salvador de Bahia and Rio de Janeiro, Brazil. It corresponded to the first AtlantECO “Biodiscovery” leg, the first case Study on "Molecular Bioprospecting" of the mission. The two principal objectives of this leg were 1) to augment plankton biodiversity discovery through replicated omics samplings, and 2) to enable the potential discovery of new bioproducts & chemicals for industrial applications with high socio-economic value, such as new ways to produce pharmaceutical products or natural enzymes able to digest complex molecules such as pollutants or plastics. Given the bioprospecting focus of this leg, sampling stations were all located within international waters, along the Vitória-Trindade Chain (VTC) consisting of 11 heterogeneous seamounts. Due to this location, an additional objective of this leg was 3) to produce samples potentially also valuable for the H2020 EU-funded All-Atlantic sister project iAtlantic (Integrated Assessment of Atlantic Marine Ecosystems in Space and Time), which overall goal is to measure the impact of climate change on the Atlantic, and notably on deep-sea corals of the VTC seamounts. In line with these objectives, the main questions we wish to address are: a) Are we under-sampling the functional and taxonomic biodiversity of marine microbiomes? What are the “rare” species? (Is everything everywhere?); b) What is the nutrient/light dynamics of a DCM? Is the DCM a vertically homogeneous feature or is it made of vertically separated niches? and c) What are the pelagic microbiomes associated with deep coral reefs? Can we characterize the vertical connectivity between the pelagic microbiomes and deep-sea corals (e.g., downward export of organic matter, using a genomic signature)? What is the survival of coral larvae in the pelagic ecosystem?

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    ZENODO
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    Authors: M. Lizotte; B. Juhls; B. Juhls; B. Juhls; +52 Authors

    Climate warming and related drivers of soil thermal change in the Arctic are expected to modify the distribution and dynamics of carbon contained in perennially frozen grounds. Thawing of permafrost in the Mackenzie Delta region of northwestern Canada, coupled with increases in river discharge and coastal erosion, trigger the release of terrestrial organic matter (OMt) from the largest Arctic drainage basin in North America into the Arctic Ocean. While this process is ongoing, well-established, and its rate is accelerating, the fate of the newly-mobilized organic matter, as it transits from the watershed through the delta and into the marine system, remains poorly understood. In the framework of the European Horizon 2020 Nunataryuk programme, and as part of the Work Package 4 (WP4) Coastal Waters theme, four field expeditions were conducted in the Mackenzie Delta region and southern Beaufort Sea from April to September 2019. The temporal sampling design allowed the survey of ambient conditions in the coastal waters under full ice cover prior to the spring freshet, during ice break-up in summer, as well as anterior to the freeze-up period in fall. To capture the fluvial-marine transition zone, and with distinct challenges related to shallow waters and changing seasonal and meteorological conditions, the field sampling was conducted in close partnership with members of the communities of Aklavik, Inuvik and Tuktoyaktuk, using several platforms: helicopters, snowmobiles and small boats. Water column profiles of physical and optical variables were measured in situ, while surface water, groundwater and sediment samples were collected and preserved for the determination of the composition and sources of OMt, including particulate and dissolved organic carbon (POC, DOC), and chromophoric dissolved organic matter (CDOM), as well as a suite of physical, chemical and biological variables. Here we present an overview of the standardized datasets, including hydrographic profiles, remote sensing reflectance, temperature and salinity, particle absorption, nutrients, dissolved organic carbon, particulate organic carbon, particulate organic nitrogen, colored dissolved organic matter absorption, fluorescent dissolved organic matter intensity, suspended particulate matter, total particulate carbon, total particulate nitrogen, stable water isotopes, radon in water, bacterial abundance, and a string of phytoplankton pigments including total chlorophyll. Datasets and related metadata can be found in Juhls et al. 2021. https://doi.pangaea.de/10.1594/PANGAEA.937587.

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    https://doi.org/10.5194/essd-2...
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    Earth System Science Data
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      https://doi.org/10.5194/essd-2...
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    Authors: Fiandrino, Annie; Cimiterra, Nicolas; Giraud, Anaïs; Stroffek, Stéphane;

    Le modèle GAMELag est un outil d’analyse et de compréhension du fonctionnement des écosystèmes lagunaires eutrophisés et d’aide à la décision pour tester des actions/aménagements en vue de leur restauration. Des travaux antérieurs ont mis à jour des limites d’utilisation de l’outil, notamment vis-à-vis de la conceptualisation trop simpliste des herbiers à zostère qui, avec les algues opportunistes vertes et rouges, constituent les 3 groupes fonctionnels pris en compte dans le modèle. Les processus d’assimilation des nutriments stockés dans le compartiment sédimentaire par le système racinaire de l’herbier n’étant pas pris en compte dans le modèle, la croissance simulée de l’herbier est fortement sous-estimée. De ce fait, le modèle est dans l’incapacité d’estimer l’état du compartiment « Macrophyte » à partir des indicateurs DCE. La présente étude a pour objectif de statuer sur la nécessité/pertinence d’affiner la formalisation des processus de croissance de l’herbier au sein du modèle. Dans un objectif de recherche des flux admissibles, il n’apparait pas nécessaire de reproduire finement l’évolution des herbiers. En revanche, il est nécessaire et suffisant que le modèle soit capable d’établir les liens entre les pressions anthropiques qui s’exercent sur l’écosystème et les conditions environnementales favorables au développement des herbiers (productions primaire et de macroalgues limitées compatibles avec des conditions de lumière suffisante pour le développement de l’herbier). Dans ce contexte, un indicateur de non-prolifération des espèces opportunistes a été recherché à partir de l’analyse des données de biomasse de macrophytes, acquises sur 13 lagunes occitanes entre 2001 et 2006 dans le cadre des diagnostics « Macrophyte-RSL ». Les principales conclusions de cette étude sont les suivantes : • la prise en compte, au sein du modèle, des deux groupes fonctionnels opportunistes des algues vertes et rouges est suffisante pour évaluer l’état du compartiment « Macrophyte » dans la mesure où elle aboutit à une évaluation correcte des stations en état « Médiocre » ou « Mauvais » dans plus de 90% des cas, • l’analyse des distributions de biomasse sur les stations où les algues vertes sont dominantes a permis de proposer un seuil de non-prolifération de l’ordre de 80 gPS.m-2 pour ce groupe fonctionnel. En revanche, la probabilité non négligeable d’observer de faibles biomasses d’algues rouges dans des états « Médiocre à Mauvais » ne permet pas de proposer un seuil de non-prolifération pour ce groupe fonctionnel. • des plages de valeurs de biomasse d‘algues opportunistes, en distinguant ou non les deux groupes fonctionnels, ont été estimées en fonction de l’état du compartiment « Macrophyte ». Celles-ci pourront dorénavant être utilisées, lors de la phase d’optimisation des paramètres du modèle, pour contraindre la production simulée d’algues opportunistes en fonction de l’état d’eutrophisation global de la lagune.

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    Authors: Andreas Crivellin; Luc Schnell;

    Leptoquarks (LQs) have attracted increasing attention within recent years, mainly since they can explain the flavor anomalies found in R(D(⁎)), b→sℓ+ℓ− transitions and the anomalous magnetic moment of the muon. In this article, we lay the groundwork for further automated analyses by presenting the complete Lagrangian and the corresponding set of Feynman rules for scalar leptoquarks. This means we consider the five representations Φ1,Φ1˜,Φ2,Φ2˜ and Φ3 and include the triple and quartic self-interactions, as well as couplings to the Standard Model (SM) fermions, gauge bosons and the Higgs. The calculations are performed using FeynRules and all model files are publicly available online at https://gitlab.com/lucschnell/SLQrules. Program Title: SLQrules CPC Library link to program files:https://doi.org/10.17632/sf8s89rhmv.1 Developer's repository link:https://gitlab.com/lucschnell/SLQrules Licensing provisions: CC By 4.0 Programming language: Mathematica, FeynRules Nature of problem: In order to explain the deviations from SM predictions in R(D(⁎)), b→ℓ+ℓ− transitions and the muon AMM jointly, models involving multiple LQ representations are necessary. This significantly increases the number of possible interactions and creates the need for computational tools that allow for studying the phenomenology of these LQ models in an automated manner. While model files exist for each LQ representation individually [1], we are not aware of any publicly available model files that combine all scalar LQ representations as well as their self-interactions. Solution method: We implemented the complete scalar LQ Lagrangian in a FeynRules [2] model file and provide the corresponding MOD and UFO model files. These can be imported directly in FeynArts [3] and MadGraph [4] to obtain a versatile toolbox for the study of scalar LQs. [1]I. Doršner, A. Greljo, J. High Energy Phys. 05 (2018) 1-21.[2]A. Alloul, et al. Comput. Phys. Commun. 185 (2014) 2250-2300.[3]T. Hahn, Comput. Phys. Commun. 140 (2001) 418-431.[4]J. Alwall, et al., J. High Energy Phys. 07 (2014) 079. Leptoquarks (LQs) have attracted increasing attention within recent years, mainly since they can explain the flavor anomalies found in $R(D^{(*)})$, $b \rightarrow s \ell^+ \ell^-$ transitions and the anomalous magnetic moment of the muon. In this article, we lay the groundwork for further automated analyses by presenting the complete Lagrangian and the corresponding set of Feynman rules for scalar leptoquarks. This means we consider the five representations $\Phi_1, \Phi_{\tilde1}, \Phi_2, \Phi_{\tilde2}$ and $\Phi_3$ and include the triple and quartic self-interactions, as well as couplings to the Standard Model (SM) fermions, gauge bosons and the Higgs. The calculations are performed using FeynRules and all model files are publicly available online at https://gitlab.com/lucschnell/SLQrules.

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    Authors: Nariman Amirgalievich Amirgaliev; Maulken Askarova; Christian Opp; Alikhan Medeu; +2 Authors

    Both the insufficiency of water resources and the contamination of even transboundary water bodies are serious problems. Water quality analyses of the transboundary (between Russia and Kazakhstan) Ural River and the Kazakh sector of the Caspian Sea, and their assessment are the main research questions of this study. It is shown that the Ural River is heavily contaminated by polychlorinated biphenyls, heavy metals, oil contaminants, and pesticides, arising from industrial enterprises and agricultural objects. The results show that these toxicants are not only present in water, but they are also accumulated in the muscular tissues of all fish (Abramis brama, Sander lucioperca, Aspius aspius). The Caspian Sea is heavily contaminated by petroleum hydrocarbons due to off shore oil production. A sufficiently high level of accumulation of petroleum hydrocarbons, organochlorine pesticides and heavy metals was determined in the muscles of Caspian fish. All these contaminations lead to the loss of biodiversity and bio-productivity of the Caspian Sea. The authors propose a methodology for a quantitative assessment of the environmental safety level in relation to the Kazakh part of the Caspian Sea, based on bioindication methods. Recommendations, aimed for maintaining acceptable values of water resources quality, are suggested.

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