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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: InĂŞs Fontes; Hanna Hartikainen; Chris F. Williams; Beth Okamura;

    Background Persistent covert infections of the myxozoan, Tetracapsuloides bryosalmonae, in primary invertebrate hosts (the freshwater bryozoan, Fredericella sultana) have been proposed to represent a reservoir for proliferative kidney disease in secondary fish hosts. However, we have limited understanding of how covert infections persist and vary in bryozoan populations over time and space and how they may impact these populations. In addition, previous studies have likely underestimated covert infection prevalence. To improve our understanding of the dynamics, impacts and implications of covert infections we employed a highly sensitive polymerase chain reaction (PCR) assay and undertook the first investigation of covert infections in the field over an annual period by sampling bryozoans every 45 days from three populations within each of three rivers. Results Covert infections persisted throughout the year and prevalence varied within and between rivers, but were often > 50%. Variation in temperature and water chemistry were linked with changes in prevalence in a manner consistent with the maintenance of covert infections during periods of low productivity and thus poor growth conditions for both bryozoans and T. bryosalmonae. The presence and increased severity of covert infections reduced host growth but only when bryozoans were also investing in the production of overwintering propagules (statoblasts). However, because statoblast production is transitory, this effect is unlikely to greatly impact the capacity of bryozoan populations to act as persistent sources of infections and hence potential disease outbreaks in farmed and wild fish populations. Conclusions We demonstrate that covert infections are widespread and persist over space and time in bryozoan populations. To our knowledge, this is the first long-term study of covert infections in a field setting. Review of the results of this and previous studies enables us to identify key questions related to the ecology and evolution of covert infection strategies and associated host-parasite interactions. Parasites & Vectors, 10 (1) ISSN:1756-3305

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    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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    Parasites & Vectors
    Article . 2017
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    Research Collection
    Article . 2017
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    Parasites & Vectors
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    Parasites & Vectors
    Article . 2017 . Peer-reviewed
    Data sources: Crossref
    ETH Zürich Research Collection
    Article . 2017
    License: CC BY
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      Parasites & Vectors
      Article . 2017
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      Parasites & Vectors
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      Parasites & Vectors
      Article . 2017 . Peer-reviewed
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      ETH Zürich Research Collection
      Article . 2017
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: J, Santos; M, Pascual; I, Fragata; P, Simões; +8 Authors

    AbstractThere is considerable evidence for an adaptive role of inversions, but how their genetic content evolves and affects the subsequent evolution of chromosomal polymorphism remains controversial. Here, we track how life‐history traits, chromosomal arrangements and 22 microsatellites, within and outside inversions, change in three replicated populations of Drosophila subobscura for 30 generations of laboratory evolution since founding from the wild. The dynamics of fitness‐related traits indicated adaptation to the new environment concomitant with directional evolution of chromosomal polymorphism. Evidence of selective changes in frequency of inversions was obtained for seven of 23 chromosomal arrangements, corroborating a role for inversions in adaptation. The evolution of linkage disequilibrium between some microsatellites and chromosomes suggested that adaptive changes in arrangements involved changes in their genetic content. Several microsatellite alleles increased in frequency more than expected by drift in targeted inversions in all replicate populations. In particular, there were signs of selection in the O3+4 arrangement favouring a combination of alleles in two loci linked to the inversion and changing along with it, although the lack of linkage disequilibrium between these loci precludes epistatic selection. Seven other alleles increased in frequency within inversions more than expected by drift, but were not in linkage disequilibrium with them. Possibly these alleles were hitchhiking along with alleles under selection that were not specific to those inversions. Overall, the selection detected on the genetic content of inversions, despite limited coverage of the genome, suggests that genetic changes within inversions play an important role in adaptation.

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    ZENODO; Journal of Evolutionary Biology
    Article . 2016 . Peer-reviewed
    License: Wiley Online Library User Agreement
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Journal of Evolution...arrow_drop_down
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      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
      ZENODO; Journal of Evolutionary Biology
      Article . 2016 . Peer-reviewed
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Wang, Zhen-Yang; Qi, Jing-Juan; Wang, Chao; Guo, Xin-Heng;

    We discuss the possibility that the X(3872) can be a $D\bar{D}^*$ molecular bound state in the Bethe-Salpeter equation approach in the ladder and instantaneous approximations. We show that the $D\bar{D}^*$ bound state with quantum numbers $J^{PC}=1^{++}$ exists. We also calculate the decay width of $X(3872) \rightarrow \gamma J/\psi$ channel and compare our result with those from previous calculations. Comment: 18pages,4 figures

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    arXiv.org e-Print Archive
    Other literature type . Preprint . 2017
    https://doi.org/10.48550/arxiv...
    Article . 2017
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      Other literature type . Preprint . 2017
      https://doi.org/10.48550/arxiv...
      Article . 2017
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Ribeiro, Cláudia; Ribeiro, Ana Rita; Maia, Alexandra S.; Tiritan, Maria Elizabeth;

    In recent decades, the presence of micropollutants in the environment has been extensively studied due to their high frequency of occurrence, persistence and possible adverse effects to exposed organisms. Concerning chiral micropollutants in the environment, enantiomers are frequently ignored and enantiomeric composition often neglected. However, enantioselective toxicity is well recognized, highlighting the need to include enantioselectivity in environmental risk assessment. Additionally, the information about enantiomeric fraction (EF) is crucial since it gives insights about: (i) environmental fate (i.e., occurrence, distribution, removal processes and (bio)degradation); (ii) illicit discharges; (iii) consumption pattern (e.g., illicit drugs, pharmaceuticals used as recreational drugs, illicit use of pesticides); and (iv) enantioselective toxicological effects. Thus, the purpose of this paper is to provide a comprehensive review about the enantioselective occurrence of chiral bioactive compounds in aquatic environmental matrices. These include pharmaceuticals, illicit drugs, pesticides, polychlorinated biphenyls (PCBs) and polycyclic musks (PCMs). Most frequently analytical methods used for separation of enantiomers were liquid chromatography and gas chromatography methodologies using both indirect (enantiomerically pure derivatizing reagents) and direct methods (chiral stationary phases). The occurrence of these chiral micropollutants in the environment is reviewed and future challenges are outlined. © 2017 by the authors. This work was developed at Laboratory of Environmental Research area/Environmental and Applied Chemistry research line of the IINFACTS-CESPU. The authors acknowledge the financial support from PARMADRUGS-CESPU-2014 and ChiralDrugs_CESPU_2017. This research was partially supported through national funds provided by FCT/MCTES: Foundation for Science and Technology from the Minister of Science, Technology and Higher Education (PIDDAC) and European Regional Development Fund (ERDF) through the COMPETE: Programa Operacional Factores de Competitividade (POFC) programme, under the Strategic Funding UID/Multi/04423/2013, in the framework of the programme PT2020. ARR and MSM acknowledge Fundação para a Ciência e Tecnologia (FCT) for their grants, SFRH/BD/86939/2012 and SFRH/BPD/101703/2014, respectively

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    Symmetry
    Article . 2017
    Data sources: Ciência-UCP
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    Article . 2017
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    Symmetry
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    Article . 2017
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    Authors: Jessica A. Leivesley; Luc F. Bussière; Josephine M. Pemberton; Jill G. Pilkington; +2 Authors

    AbstractA trade‐off between current and future fitness potentially explains variation in life‐history strategies. A proposed mechanism behind this is parasite‐mediated reproductive costs: individuals that allocate more resources to reproduction have fewer to allocate to defence against parasites, reducing future fitness. We examined how reproduction influenced faecal egg counts (FEC) of strongyle nematodes using data collected between 1989 and 2008 from a wild population of Soay sheep in the St. Kilda archipelago, Scotland (741 individuals). Increased reproduction was associated with increased FEC during the lambing season: females that gave birth, and particularly those that weaned a lamb, had higher FEC than females that failed to reproduce. Structural equation modelling revealed future reproductive costs: a positive effect of reproduction on spring FEC and a negative effect on summer body weight were negatively associated with overwinter survival. Overall, we provide evidence that parasite resistance and body weight are important mediators of survival costs of reproduction.

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    Ecology Letters
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    Ecology Letters
    Article . 2019
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      Ecology Letters
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      Ecology Letters
      Article . 2019
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    Authors: Soares, Cláudia; Gomes, João;

    In practice, network applications have to deal with failing nodes, malicious attacks, or, somehow, nodes facing highly corrupted data --- generally classified as outliers. This calls for robust, uncomplicated, and efficient methods. We propose a dissimilarity model for network localization which is robust to high-power noise, but also discriminative in the presence of regular gaussian noise. We capitalize on the known properties of the M-estimator Huber penalty function to obtain a robust, but nonconvex, problem, and devise a convex underestimator, tight in the function terms, that can be minimized in polynomial time. Simulations show the performance advantage of using this dissimilarity model in the presence of outliers and under regular gaussian noise.

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    Authors: D. B. Reis; I. García-Herrero; Rodrigo Riera; B.C. Felipe; +5 Authors

    In this study, two new alternative preys: Grapsus adscensionis zoeae (as sole prey) and Palaemon elegans zoeae (in cofeeding with Artemia sp.), as well as, Artemia sp. juveniles were used as feed for octopus paralarvae, as a way to understand its lipid requirements. Total lipid (TL) content, lipid class (LC) and fatty acid (FA) profiles of preys, octopus hatchlings and 9‐day‐old paralarvae were analysed. Growth and survival of the paralarvae were also determined. Regardless the prey provided, a notable shift in the lipid profile of paralarvae was registered after 9 days of rearing. The highest index of growth rate (IGR) recorded when decapod crustacean zoeae were supplied might have some relation with levels of 20:4n‐6 (ARA) and DHA/EPA ratio observed. In this sense, Grapsus adscensionis zoeae leaded to a higher content of ARA and a lower content of EPA, which may indicate a possible competition between these two FA. For that a balanced EPA/ARA ratio might be significant in this species nutrition without disconsidering DHA levels as an essential fatty acid. Finally, the changes observed in paralarvae FA profile might not only be related to prey FA profile, but also with changes occurring in the lipid classes contents. 806 797 10

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    Aquaculture Nutrition
    Article . 2014 . Peer-reviewed
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      Aquaculture Nutrition
      Article . 2014 . Peer-reviewed
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    Authors: Hauton, Chris; Brown, Alastair; Thatje, Sven; Mestre, Nélia C.; +16 Authors

    In January 2017, the International Seabed Authority released a discussion paper on the development of Environmental Regulations for deep-sea mining (DSM) within the Area Beyond National Jurisdiction (the “Area”). With the release of this paper, the prospect for commercial mining in the Area within the next decade has become very real. Moreover, within nations’ Exclusive Economic Zones, the exploitation of deep-sea mineral ore resources could take place on very much shorter time scales and, indeed, may have already started. However, potentially toxic metal mixtures may be released at sea during different stages of the mining process and in different physical phases (dissolved or particulate). As toxicants, metals can disrupt organism physiology and performance, and therefore may impact whole populations, leading to ecosystem scale effects. A challenge to the prediction of toxicity is that deep-sea ore deposits include complex mixtures of minerals, including potentially toxic metals such as copper, cadmium, zinc, and lead, as well as rare earth elements. Whereas the individual toxicity of some of these dissolved metals has been established in laboratory studies, the complex and variable mineral composition of seabed resources makes the a priori prediction of the toxic risk of DSM extremely challenging. Furthermore, although extensive data quantify the toxicity of metals in solution in shallow-water organisms, these may not be representative of the toxicity in deep-sea organisms, which may differ biochemically and physiologically and which will experience those toxicants under conditions of low temperature, high hydrostatic pressure, and potentially altered pH. In this synthesis, we present a summation of recent advances in our understanding of the potential toxic impacts of metal exposure to deep-sea meio- to megafauna at low temperature and high pressure, and consider the limitation of deriving lethal limits based on the paradigm of exposure to single metals in solution. We consider the potential for long-term and farfield impacts to key benthic invertebrates, including the very real prospect of sub-lethal impacts and behavioral perturbation of exposed species. In conclusion, we advocate the adoption of an existing practical framework for characterizing bulk resource toxicity in advance of exploitation. info:eu-repo/semantics/publishedVersion

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    Frontiers in Marine Science
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    DOAJ
    Article . 2017
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    ZENODO; Frontiers in Marine Science
    Article . 2017 . Peer-reviewed
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      Frontiers in Marine Science
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      ZENODO; Frontiers in Marine Science
      Article . 2017 . Peer-reviewed
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    Authors: Christina Viegelmann; Lekha Menon Margassery; Jonathan Kennedy; Tong Zhang; +5 Authors

    Metabolomics and genomics are two complementary platforms for analyzing an organism as they provide information on the phenotype and genotype, respectively. These two techniques were applied in the dereplication and identification of bioactive compounds from a Streptomyces sp. (SM8) isolated from the sponge Haliclona simulans from Irish waters. Streptomyces strain SM8 extracts showed antibacterial and antifungal activity. NMR analysis of the active fractions proved that hydroxylated saturated fatty acids were the major components present in the antibacterial fractions. Antimycin compounds were initially putatively identified in the antifungal fractions using LC-Orbitrap. Their presence was later confirmed by comparison to a standard. Genomic analysis of Streptomyces sp. SM8 revealed the presence of multiple secondary metabolism gene clusters, including a gene cluster for the biosynthesis of the antifungal antimycin family of compounds. The antimycin gene cluster of Streptomyces sp. SM8 was inactivated by disruption of the antimycin biosynthesis gene antC. Extracts from this mutant strain showed loss of antimycin production and significantly less antifungal activity than the wild-type strain. Three butenolides, 4,10-dihydroxy-10-methyl-dodec-2-en-1,4-olide (1), 4,11-dihydroxy-10-methyl-dodec-2-en-1,4-olide (2), and 4-hydroxy-10-methyl-11-oxo-dodec-2-en-1,4-olide (3) that had previously been reported from marine Streptomyces species were also isolated from SM8. Comparison of the extracts of Streptomyces strain SM8 and its host sponge, H. simulans, using LC-Orbitrap revealed the presence of metabolites common to both extracts, providing direct evidence linking sponge metabolites to a specific microbial symbiont.

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    Marine Drugs
    Other literature type . Article . 2014 . Peer-reviewed
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    Marine Drugs
    Article . 2014
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      Marine Drugs
      Other literature type . Article . 2014 . Peer-reviewed
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    Authors: Guerreiro I.; Castro C.; Antunes B.; Coutinho F.; +11 Authors

    Abstract This study aimed to evaluate the effect of diets including 10%, 20%, and 30% of black soldier fly larvae (Hermetia illucens) meal (HM) (diets HM10, HM20, and HM30, respectively), replacing 17%, 35%, and 52% of fishmeal (FM), on growth performance, whole-body composition and fatty acid (FA) profile, plasma biochemistry, and intermediary metabolism of meagre (Argyrosomus regius) juveniles. For that purpose, triplicate groups of 18.0 ± 0.02 g fish were fed a control diet (CTR) without HM, and the experimental diets for 9 weeks. Growth, feed efficiency, protein efficiency ratio, nitrogen and energy retentions linearly decreased with the increase of dietary HM level. With the exception of ash, whole-body composition was not linearly affected by dietary HM inclusion. Regarding whole-body FA profile, total saturated fatty acids (SFA), SFA: polyunsaturated fatty acids (PUFA) ratio, and total n-6PUFA linearly increased with increasing levels of dietary HM, while total n-3PUFA, n-3 long chain PUFA (LC-PUFA), n-3:n-6 ratio, and unsaturation index linearly decreased with increasing levels of HM in the diets. Docosahexaenoic acid (DHA) whole-body retention linearly decreased while lauric acid (12:0) retention increased with the increase of HM in the diet. Plasma glucose linearly increased, while plasma triglycerides and total lipids decreased with the dietary level of HM. Hepatic amino acid catabolic (alanine aminotransferease and aspartate aminotransferease), and lipogenic (glucose-6-phosphate dehydrogenase and malic enzyme) enzymes activities were unaffected by diet composition, whereas lipid catabolic (3-hydroxyacyl-CoA dehydrogenase) enzyme activity linearly decreased with dietary HM level. Glutamate dehydrogenase, an amino acid catabolic enzyme, was lower in fish fed the HM20 diet than the other HM-including diets. Overall, 10% of HM, corresponding to 17% of FM replacement, might be included in meagre diets without major adverse effects on growth, feed utilization, whole-body composition and FA profile.

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    Aquaculture
    Article . 2020 . Peer-reviewed
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    Authors: InĂŞs Fontes; Hanna Hartikainen; Chris F. Williams; Beth Okamura;

    Background Persistent covert infections of the myxozoan, Tetracapsuloides bryosalmonae, in primary invertebrate hosts (the freshwater bryozoan, Fredericella sultana) have been proposed to represent a reservoir for proliferative kidney disease in secondary fish hosts. However, we have limited understanding of how covert infections persist and vary in bryozoan populations over time and space and how they may impact these populations. In addition, previous studies have likely underestimated covert infection prevalence. To improve our understanding of the dynamics, impacts and implications of covert infections we employed a highly sensitive polymerase chain reaction (PCR) assay and undertook the first investigation of covert infections in the field over an annual period by sampling bryozoans every 45 days from three populations within each of three rivers. Results Covert infections persisted throughout the year and prevalence varied within and between rivers, but were often > 50%. Variation in temperature and water chemistry were linked with changes in prevalence in a manner consistent with the maintenance of covert infections during periods of low productivity and thus poor growth conditions for both bryozoans and T. bryosalmonae. The presence and increased severity of covert infections reduced host growth but only when bryozoans were also investing in the production of overwintering propagules (statoblasts). However, because statoblast production is transitory, this effect is unlikely to greatly impact the capacity of bryozoan populations to act as persistent sources of infections and hence potential disease outbreaks in farmed and wild fish populations. Conclusions We demonstrate that covert infections are widespread and persist over space and time in bryozoan populations. To our knowledge, this is the first long-term study of covert infections in a field setting. Review of the results of this and previous studies enables us to identify key questions related to the ecology and evolution of covert infection strategies and associated host-parasite interactions. Parasites & Vectors, 10 (1) ISSN:1756-3305

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    Parasites & Vectors
    Article . 2017
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    Research Collection
    Article . 2017
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    Article . 2017
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    Parasites & Vectors
    Article . 2017 . Peer-reviewed
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    Article . 2017
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