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description Publicationkeyboard_double_arrow_right Article 2018 Spain, PortugalPublisher:Elsevier BV Funded by:FCT | SFRH/BPD/77487/2011, EC | BLUEandGREENFCT| SFRH/BPD/77487/2011 ,EC| BLUEandGREENAndré M. Machado; Tereza Almeida; Gonzalo Mucientes; Pedro J. Esteves; Ana Veríssimo; L. Filipe C. Castro;Cartilaginous fishes (sharks, rays and chimaeras) comprise a highly diversified group of basal vertebrates occupying a plethora of ecological aquatic niches. They represent critical components of marine ecosystems and food webs, although numerous species are threatened and almost half are poorly known. Genomic resources emerging from this basal jawed vertebrate group have offered valuable insights into the evolution of vertebrate-specific traits. Yet, the taxon remains largely understudied. Here, we generated the first high-quality de novo assembly of kidney and spleen transcriptomes of the blue shark (Prionace glauca). A total of 32,917,412 and 52,666,542 reads were obtained for spleen and kidney, respectively, using RNA-Seq Illumina technology. De novo multi-tissue assembly resulted in 97,317 unigenes with an N50 of 1975 bp, in which 87,571 were assigned to a particular tissue or combination of tissues based on the sequencing read mapping. Functional annotation generated 28,564 and 19,854 open reading frames in spleen and kidney, respectively. This dataset provides a significant resource for physiological and evolutionary studies, namely into the unique osmoregulatory system of Chondrichthyes and the evolution of the immune system in vertebrates. We acknowledge Fundação para a Ciência e a Tecnologia for the support to T.A. (SFRH/BD/108253/2015), P.J.E. (SFRH/BD/108253/2015) and A.V. (SFRH/BPD/77487/2011). L.F.C.C. and A.M.M. research is supported by the MarInfo - Integrated Platform for Marine Data Acquisition and Analysis (reference NORTE-01-0145-FEDER-000031), a project supported by the North Portugal Regional Operational Program (NORTE 2020), under the PORTUGAL 2020 Partnership Agreement, through the European Regional Development Fund (ERDF). G.M. was supported by a fellowship from the project PELAGICS (PTDC/MAR-BIO/4458/2012) funded by Portuguese national funds through FCT/MCTES (PIDDAC) and co-funded by the European Regional Development Fund (FEDER) through COMPETE-Programa Operacional Factores de Competitividade (POFC). 4 pages, 2 figures, 1 table Peer reviewed
LAReferencia - Red F... arrow_drop_down Recolector de Ciencia Abierta, RECOLECTA; DIGITAL.CSICArticle . 2023 . 2018 . Peer-reviewedadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
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For further information contact us at helpdesk@openaire.euAccess RoutesGreen 8 citations 8 popularity Top 10% influence Average impulse Top 10% Powered by BIP!visibility 26visibility views 26 download downloads 44 Powered bymore_vert LAReferencia - Red F... arrow_drop_down Recolector de Ciencia Abierta, RECOLECTA; DIGITAL.CSICArticle . 2023 . 2018 . Peer-reviewedadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
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description Publicationkeyboard_double_arrow_right Article 2018 Spain, PortugalPublisher:Elsevier BV Funded by:FCT | SFRH/BPD/77487/2011, EC | BLUEandGREENFCT| SFRH/BPD/77487/2011 ,EC| BLUEandGREENAndré M. Machado; Tereza Almeida; Gonzalo Mucientes; Pedro J. Esteves; Ana Veríssimo; L. Filipe C. Castro;Cartilaginous fishes (sharks, rays and chimaeras) comprise a highly diversified group of basal vertebrates occupying a plethora of ecological aquatic niches. They represent critical components of marine ecosystems and food webs, although numerous species are threatened and almost half are poorly known. Genomic resources emerging from this basal jawed vertebrate group have offered valuable insights into the evolution of vertebrate-specific traits. Yet, the taxon remains largely understudied. Here, we generated the first high-quality de novo assembly of kidney and spleen transcriptomes of the blue shark (Prionace glauca). A total of 32,917,412 and 52,666,542 reads were obtained for spleen and kidney, respectively, using RNA-Seq Illumina technology. De novo multi-tissue assembly resulted in 97,317 unigenes with an N50 of 1975 bp, in which 87,571 were assigned to a particular tissue or combination of tissues based on the sequencing read mapping. Functional annotation generated 28,564 and 19,854 open reading frames in spleen and kidney, respectively. This dataset provides a significant resource for physiological and evolutionary studies, namely into the unique osmoregulatory system of Chondrichthyes and the evolution of the immune system in vertebrates. We acknowledge Fundação para a Ciência e a Tecnologia for the support to T.A. (SFRH/BD/108253/2015), P.J.E. (SFRH/BD/108253/2015) and A.V. (SFRH/BPD/77487/2011). L.F.C.C. and A.M.M. research is supported by the MarInfo - Integrated Platform for Marine Data Acquisition and Analysis (reference NORTE-01-0145-FEDER-000031), a project supported by the North Portugal Regional Operational Program (NORTE 2020), under the PORTUGAL 2020 Partnership Agreement, through the European Regional Development Fund (ERDF). G.M. was supported by a fellowship from the project PELAGICS (PTDC/MAR-BIO/4458/2012) funded by Portuguese national funds through FCT/MCTES (PIDDAC) and co-funded by the European Regional Development Fund (FEDER) through COMPETE-Programa Operacional Factores de Competitividade (POFC). 4 pages, 2 figures, 1 table Peer reviewed
LAReferencia - Red F... arrow_drop_down Recolector de Ciencia Abierta, RECOLECTA; DIGITAL.CSICArticle . 2023 . 2018 . Peer-reviewedadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1016/j.margen.2017.11.009&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euAccess RoutesGreen 8 citations 8 popularity Top 10% influence Average impulse Top 10% Powered by BIP!visibility 26visibility views 26 download downloads 44 Powered bymore_vert LAReferencia - Red F... arrow_drop_down Recolector de Ciencia Abierta, RECOLECTA; DIGITAL.CSICArticle . 2023 . 2018 . Peer-reviewedadd ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.1016/j.margen.2017.11.009&type=result"></script>'); --> </script>
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