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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Haputhantri, S; Villanueva, Ching-maria; Moreau, J;

    This study attempts to assemble and summarize existing information in order to build a general representation of the trophic interactions within the shallow coastal ecosystem of Sri Lanka. A multispecific ecosystem-based approach on trophic relationships and their possible variations was performed using ECOPATH. Thirty-nine functional groups were considered representing all trophic levels in the food web. Time-dynamic simulation was carried out using the ECOSIM routine to evaluate the impact of the 1998 El Nino event on key functional groups. Results show that the time needed for any impacted functional group to recover to its initial abundance increased with the trophic level. Two time-series data sets derived from commercial catch and effort statistics were used for validation of ECOSIM results. The El Nino simulation results validated by the time-series data confirmed the ability of the proposed multispecies model to describe the sudden environmental changes. Possible impacts due to increase of fishing effort were also simulated by separately considering frequently used fishing gears. The analysis revealed that small-mesh gillnet fishery operates independently from the other existing developing fisheries in the same area and can be managed accordingly. Fishing-effort simulations suggest that the increase of fishing intensity by small-mesh gillnets would contribute to the decline of small pelagic catch. This was also found to influence the overall catch. The present level of exploitation of small pelagic fishery resources does not seem sustainable. (C) 2007 Elsevier Ltd. All rights reserved.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ArchiMer - Instituti...arrow_drop_down
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    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    Estuarine Coastal and Shelf Science
    Article . 2008 . Peer-reviewed
    License: Elsevier TDM
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ArchiMer - Instituti...arrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
      Estuarine Coastal and Shelf Science
      Article . 2008 . Peer-reviewed
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    Authors: Anja Schwarz; Falko Turner; Stefan Lauterbach; Birgit Plessen; +7 Authors

    Abstract Arid Central Asia represents a key region for understanding climate variability and interactions in the Northern Hemisphere. Patterns and mechanisms of Holocene climate change in arid Central Asia are, however, only partially understood. Multi-proxy data combining diatom, ostracod, sedimentological, geochemical and stable isotope analyses from a ca. 6000-year-old lake sediment core from Son Kol (Central Kyrgyzstan) show distinct and repeated changes in species assemblages. Diatom- and ostracod-inferred conductivity shifts between meso-euhaline and freshwater conditions suggest water balance and regime shifts. Organism-derived data are corroborated by stable isotope, mineralogical and geochemical records, underlining that Son Kol was affected by strong lake level fluctuations of several meters. The δ13Ccarb/δ18Ocarb correlation shows repeated switchovers from a closed to an open lake system. From 6000 to 3800 and 3250 to 1950 cal. yr BP, Son Kol was a closed basin lake with higher conductivities, increased nutrient availability and a water level located below the modern outflow. Son Kol became again a hydrologically open lake at 3800 and 1950 cal. yr BP. Comparisons to other local and regional paleoclimate records indicate that these regime shifts were largely controlled by changing intensity and position of the Westerlies and the Siberian Anticyclone that triggered changes in the amount of winter precipitation. A strong influence of the Westerlies ca. 5000–4400, 3800–3250 and since 1950 cal. yr BP enhanced the amount of precipitation during spring, autumn and winter, whereas cold and dry winters prevailed during phases with a strong Siberian Anticyclone and southward shifted Westerlies at ca. 6000–5000, 4400–3800 and 3250–1950 cal. yr BP. Similarities between variations in winter precipitation at Son Kol and records of the predominant NAO-mode further suggest a teleconnection between wet (dry) winter climate in Central Asia and a positive (negative) NAO-mode. Thus, this study identifies climate fluctuations as the main driver for hydrological regime shifts in Son Kol controlling physicochemical conditions and consequently causing abrupt species assemblage changes. This emphasizes the importance of multi-proxy approaches to identify triggers, thresholds and cascades of aquatic ecosystem transformations.

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    Quaternary Science Reviews
    Article . 2017 . Peer-reviewed
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      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
      Quaternary Science Reviews
      Article . 2017 . Peer-reviewed
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    Authors: Zhengpei Ye; Ines M.G. Vollhardt; Nadia Parth; Oskar Rennstam Rubbmark; +1 Authors

    Abstract Facultative bacterial endosymbionts can protect their aphid hosts from natural enemies such as hymenopteran parasitoids. As such, they have the capability to modulate interactions between aphids, parasitoids and hyperparasitoids. However, the magnitude of these effects in natural aphid populations and their associated parasitoid communities is currently unknown. Moreover, environmental factors such as plant fertilization and landscape complexity are known to affect aphid–parasitoid interactions but it remains unclear how such environmental factors affect the interplay between aphids, parasitoids and endosymbionts. Here, we tested whether facultative endosymbionts confer protection to parasitoids in natural populations of the English grain aphid, Sitobion avenae, and if this is affected by plant fertilization and landscape complexity. Furthermore, we examined whether the effects of facultative endosymbionts can cascade up to the hyperparasitoid level and increase primary‐hyperparasitoid food web specialization. Living aphids and mummies were collected in fertilized and unfertilized plots within 13 wheat fields in Central Germany. We assessed the occurrence of primary parasitoid, hyperparasitoid and endosymbiont species in aphids and mummies using a newly established molecular approach. Facultative endosymbiont infection rates were high across fields (~80%), independent of whether aphids were parasitized or unparasitized. Aphid mummies exhibited a significantly lower share of facultative endosymbiont infection (~38%). These findings suggest that facultative endosymbionts do not affect parasitoid oviposition behaviour, but decrease parasitoid survival in the host. Facultative endosymbiont infection rates were lower in mummies collected from fertilized compared to unfertilized plants, indicating that plant fertilization boosts the facultative endosymbiont protective effect. Furthermore, we found strong evidence for species‐specific and negative cascading effects of facultative endosymbionts on primary and hyperparasitoids, respectively. Facultative endosymbionts impacted parasitoid assemblages and increased the specialization of primary‐hyperparasitoid food webs: these effects were independent from and much stronger than other environmental factors. The current findings strongly suggest that facultative endosymbionts act as a driving force in aphid–parasitoid–hyperparasitoid networks: they shape insect community composition at different trophic levels and modulate, directly and indirectly, the interactions between aphids, parasitoids and their environment.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Europe PubMed Centra...arrow_drop_down
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    Journal of Animal Ecology
    Article . 2018 . Peer-reviewed
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    Journal of Animal Ecology
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      Journal of Animal Ecology
      Article . 2018 . Peer-reviewed
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      Journal of Animal Ecology
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Horneck, G.; Walter, N.; Westall, F.; Grenfell, J.L.; +16 Authors

    Table of Contents 1. Introduction 1.1. The project AstRoMap within the Framework Programme for Research and Innovation (FP7) of the European Union 1.2. The European astrobiology environment and landscape in Europe 1.3. Setting the scene: timeline and astrobiology concepts 2. The Astrobiology Roadmap for Europe 3. Research Topic 1: Origin and Evolution of Planetary Systems 3.1. State of the art 3.2. Key objectives 3.3. Approach to achieve the key objectives 3.4. European strengths and needs 4. Research Topic 2: Origins of Organic Compounds in Space 4.1. State of the art 4.2. Key objectives 4.3. Approach to achieve the key objectives 4.4. European strengths and needs 5. Research Topic 3: Rock-Water-Carbon Interactions, Organic Synthesis on Earth, and Steps to Life 5.1. State of the art 5.2. Key objectives 5.3. Approach to achieve the key objectives 5.4. European strengths and needs 6. Research Topic 4: Life and Habitability 6.1. State of the art 6.2. Key objectives 6.3. Approach to achieve the key objectives 6.4. European strengths and needs 7. Research Topic 5: Biosignatures as Facilitating Life Detection 7.1. State of the art 7.2. Key objectives 7.3. Approach to achieve the key objectives 7.4. European strengths and needs 8. Conclusions and Recommendations 8.1. Cross-cutting issues of relevance 8.2. Towards a better coordination of astrobiology research in Europe—the need for a pan-European platform Acknowledgments References Abbreviations Used Abstract The European AstRoMap project (supported by the European Commission Seventh Framework Programme) surveyed the state of the art of astrobiology in Europe and beyond and produced the first European roadmap for astrobiology research. In the context of this roadmap, astrobiology is understood as the study of the origin, evolution, and distribution of life in the context of cosmic evolution; this includes habitability in the Solar System and beyond. The AstRoMap Roadmap identifies five research topics, specifies several key scientific objectives for each topic, and suggests ways to achieve all the objectives. The five AstRoMap Research Topics are • Research Topic 1: Origin and Evolution of Planetary Systems• Research Topic 2: Origins of Organic Compounds in Space• Research Topic 3: Rock-Water-Carbon Interactions, Organic Synthesis on Earth, and Steps to Life• Research Topic 4: Life and Habitability• Research Topic 5: Biosignatures as Facilitating Life Detection It is strongly recommended that steps be taken towards the definition and implementation of a European Astrobiology Platform (or Institute) to streamline and optimize the scientific return by using a coordinated infrastructure and funding system. Key Words: Astrobiology roadmap—Europe—Origin and evolution of life—Habitability—Life detection—Life in extreme environments. Astrobiology 16, 201–243.

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    Astrobiology
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    Hal-Diderot
    Article . 2016
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    Authors: Praher, Daniela; Zimmermann, Bob; Dnyansagar, Rohit; Miller, David J.; +10 Authors

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    Authors: Kruse, Jens; Abraham, Marion; Santner, Jakob; Siebers, Meike; +13 Authors

    Phosphorus (P) is an indispensable element for all life on Earth and, during the past decade, concerns about the future of its global supply have stimulated much research on soil P and method development. This review provides an overview of advanced state-of-the-art methods currently used in soil P research. These involve bulk and spatially resolved spectroscopic and spectrometric P speciation methods (1 and 2D NMR, IR, Raman, Q-TOF MS/MS, high resolution-MS, NanoSIMS, XRF, XPS, (µ)XAS) as well as methods for assessing soil P reactions (sorption isotherms, quantum-chemical modeling, microbial biomass P, enzymes activity, DGT, 33P isotopic exchange, 18O isotope ratios). Required experimental set-ups and the potentials and limitations of individual methods present a guide for the selection of most suitable methods or combinations.

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    Authors: Armin Birner; Stephan Seiler; Nina Lackner; Susanne A Bengesser; +13 Authors

    Background Cerebral white matter lesions (WML) have been found in normal aging, vascular disease and several neuropsychiatric conditions. Correlations of WML with clinical parameters in BD have been described, but not with the number of affective episodes, illness duration, age of onset and Body Mass Index in a well characterized group of euthymic bipolar adults. Herein, we aimed to evaluate the associations between bipolar course of illness parameters and WML measured with volumetric analysis. Methods In a cross-sectional study 100 euthymic individuals with BD as well as 54 healthy controls (HC) were enrolled to undergo brain magnetic resonance imaging using 3T including a FLAIR sequence for volumetric assessment of WML-load using FSL-software. Additionally, clinical characteristics and psychometric measures including Structured Clinical Interview according to DSM-IV, Hamilton-Depression, Young Mania Rating Scale and Beck’s Depression Inventory were evaluated. Results Individuals with BD had significantly more (F = 3.968, p < .05) WML (Mdn = 3710mm3; IQR = 2961mm3) than HC (Mdn = 2185mm3; IQR = 1665mm3). BD men (Mdn = 4095mm3; IQR = 3295mm3) and BD women (Mdn = 3032mm3; IQR = 2816mm3) did not significantly differ as to the WML-load or the number and type of risk factors for WML. However, in men only, the number of manic/hypomanic episodes (r = 0.72; p < .001) as well as depressive episodes (r = 0.51; p < .001) correlated positively with WML-load. Conclusions WML-load strongly correlated with the number of manic episodes in male BD patients, suggesting that men might be more vulnerable to mania in the context of cerebral white matter changes.

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    Authors: Gratton, P; Trucchi, E; Trasatti, A; Riccarducci, G; +4 Authors

    All species concepts are rooted in reproductive, and ultimately genealogical, relations. Genetic data are thus the most important source of information for species delimitation. Current ease of access to genomic data and recent computational advances are blooming a plethora of coalescent-based species delimitation methods. Despite their utility as objective approaches to identify species boundaries, coalescent-based methods (1) rely on simplified demographic models that may fail to capture some attributes of biological species, (2) do not make explicit use of the geographic information contained in the data, and (3) are often computationally intensive. In this article, we present a case of species delimitation in the Erebia tyndarus species complex, a taxon regarded as a classic example of problematic taxonomic resolution. Our approach to species delimitation used genomic data to test predictions rooted in the biological species concept and in the criterion of coexistence in sympatry. We (1) obtained restriction-site associated DNA (RAD) sequencing data from a carefully designed sample, (2) applied two genotype clustering algorithms to identify genetic clusters, and (3) performed within-clusters and between-clusters analyses of isolation by distance as a test for intrinsic reproductive barriers. Comparison of our results with those from a Bayes factor delimitation coalescent-based analysis, showed that coalescent-based approaches may lead to overconfident splitting of allopatric populations, and indicated that incorrect species delimitation is likely to be inferred when an incomplete geographic sample is analyzed. While we acknowledge the theoretical justification and practical usefulness of coalescent-based species delimitation methods, our results stress that, even in the phylogenomic era, the toolkit for species delimitation should not dismiss more traditional, biologically grounded, approaches coupling genomic data with geographic information.

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    Systematic Biology
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    Authors: Suman Chatterjee; Nikolaus Frohner; Lukas Lechner; Robert Schöfbeck; +1 Authors

    We present a new tree boosting algorithm designed for the measurement of parameters in the context of effective field theory (EFT). To construct the algorithm, we interpret the optimized loss function of a traditional decision tree as the maximal Fisher information in Poisson counting experiments. We promote the interpretation to general EFT predictions and develop a suitable boosting method. The resulting ``Boosted Information Tree'' algorithm approximates the score, the derivative of the log-likelihood function with respect to the parameter. It thus provides a sufficient statistic in the vicinity of a reference point in parameter space where the estimator is trained. The training exploits per-event information of likelihood ratios for different theory parameter values available in the simulated EFT data sets. 23 pages, 3 figures. Updated with referee comments

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    Computer Physics Communications
    Article . 2022 . Peer-reviewed
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      Computer Physics Communications
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    Authors: Tiffany S. Slater; Kate Ashbrook; Jürgen Kriwet;

    AbstractThe evolution of modern sharks, skates and rays (Elasmobranchii) is largely enigmatic due to their possession of a labile cartilaginous skeleton; consequently, taxonomic assignment often depends on isolated teeth. Bullhead sharks (Heterodontiformes) are a group of basal neoselachians, thus their remains and relationships are integral to understanding elasmobranch evolution. Herein we fully describe †Paracestracion danieli – a bullhead shark from the Late Jurassic plattenkalks of Eichstätt, Germany (150–154 Ma) – for its inclusion in cladistic analysis (utilizing parsimonious principles) of morphological characters from complete †Paracestracion and Heterodontus fossil specimens as well as extant forms of the latter. The presence of two separate monophyletic clades within Heterodontiformes was confirmed, based on predominantly non‐dental characters, which show a strong divergence in body morphology between †Paracestracion and Heterodontus; the latter possessing a first dorsal fin and pectoral fins that are more anterior and pelvic fins that are more posterior. This study emphasizes the importance of including non‐dental features in heterodontiform systematics (as compared with the use of dental characters alone) and supports the erection of the family †Paracestracionidae. Further, phylogenetic analysis of molecular data from five extant species suggests that crown heterodontiforms arose from a diversification event 42.58 Ma off the west coast of the Americas.

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    Papers in Palaeontology
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Haputhantri, S; Villanueva, Ching-maria; Moreau, J;

    This study attempts to assemble and summarize existing information in order to build a general representation of the trophic interactions within the shallow coastal ecosystem of Sri Lanka. A multispecific ecosystem-based approach on trophic relationships and their possible variations was performed using ECOPATH. Thirty-nine functional groups were considered representing all trophic levels in the food web. Time-dynamic simulation was carried out using the ECOSIM routine to evaluate the impact of the 1998 El Nino event on key functional groups. Results show that the time needed for any impacted functional group to recover to its initial abundance increased with the trophic level. Two time-series data sets derived from commercial catch and effort statistics were used for validation of ECOSIM results. The El Nino simulation results validated by the time-series data confirmed the ability of the proposed multispecies model to describe the sudden environmental changes. Possible impacts due to increase of fishing effort were also simulated by separately considering frequently used fishing gears. The analysis revealed that small-mesh gillnet fishery operates independently from the other existing developing fisheries in the same area and can be managed accordingly. Fishing-effort simulations suggest that the increase of fishing intensity by small-mesh gillnets would contribute to the decline of small pelagic catch. This was also found to influence the overall catch. The present level of exploitation of small pelagic fishery resources does not seem sustainable. (C) 2007 Elsevier Ltd. All rights reserved.

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    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    Estuarine Coastal and Shelf Science
    Article . 2008 . Peer-reviewed
    License: Elsevier TDM
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ArchiMer - Instituti...arrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
      Estuarine Coastal and Shelf Science
      Article . 2008 . Peer-reviewed
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    Authors: Anja Schwarz; Falko Turner; Stefan Lauterbach; Birgit Plessen; +7 Authors

    Abstract Arid Central Asia represents a key region for understanding climate variability and interactions in the Northern Hemisphere. Patterns and mechanisms of Holocene climate change in arid Central Asia are, however, only partially understood. Multi-proxy data combining diatom, ostracod, sedimentological, geochemical and stable isotope analyses from a ca. 6000-year-old lake sediment core from Son Kol (Central Kyrgyzstan) show distinct and repeated changes in species assemblages. Diatom- and ostracod-inferred conductivity shifts between meso-euhaline and freshwater conditions suggest water balance and regime shifts. Organism-derived data are corroborated by stable isotope, mineralogical and geochemical records, underlining that Son Kol was affected by strong lake level fluctuations of several meters. The δ13Ccarb/δ18Ocarb correlation shows repeated switchovers from a closed to an open lake system. From 6000 to 3800 and 3250 to 1950 cal. yr BP, Son Kol was a closed basin lake with higher conductivities, increased nutrient availability and a water level located below the modern outflow. Son Kol became again a hydrologically open lake at 3800 and 1950 cal. yr BP. Comparisons to other local and regional paleoclimate records indicate that these regime shifts were largely controlled by changing intensity and position of the Westerlies and the Siberian Anticyclone that triggered changes in the amount of winter precipitation. A strong influence of the Westerlies ca. 5000–4400, 3800–3250 and since 1950 cal. yr BP enhanced the amount of precipitation during spring, autumn and winter, whereas cold and dry winters prevailed during phases with a strong Siberian Anticyclone and southward shifted Westerlies at ca. 6000–5000, 4400–3800 and 3250–1950 cal. yr BP. Similarities between variations in winter precipitation at Son Kol and records of the predominant NAO-mode further suggest a teleconnection between wet (dry) winter climate in Central Asia and a positive (negative) NAO-mode. Thus, this study identifies climate fluctuations as the main driver for hydrological regime shifts in Son Kol controlling physicochemical conditions and consequently causing abrupt species assemblage changes. This emphasizes the importance of multi-proxy approaches to identify triggers, thresholds and cascades of aquatic ecosystem transformations.

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    Quaternary Science Reviews
    Article . 2017 . Peer-reviewed
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      Quaternary Science Reviews
      Article . 2017 . Peer-reviewed
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    Authors: Zhengpei Ye; Ines M.G. Vollhardt; Nadia Parth; Oskar Rennstam Rubbmark; +1 Authors

    Abstract Facultative bacterial endosymbionts can protect their aphid hosts from natural enemies such as hymenopteran parasitoids. As such, they have the capability to modulate interactions between aphids, parasitoids and hyperparasitoids. However, the magnitude of these effects in natural aphid populations and their associated parasitoid communities is currently unknown. Moreover, environmental factors such as plant fertilization and landscape complexity are known to affect aphid–parasitoid interactions but it remains unclear how such environmental factors affect the interplay between aphids, parasitoids and endosymbionts. Here, we tested whether facultative endosymbionts confer protection to parasitoids in natural populations of the English grain aphid, Sitobion avenae, and if this is affected by plant fertilization and landscape complexity. Furthermore, we examined whether the effects of facultative endosymbionts can cascade up to the hyperparasitoid level and increase primary‐hyperparasitoid food web specialization. Living aphids and mummies were collected in fertilized and unfertilized plots within 13 wheat fields in Central Germany. We assessed the occurrence of primary parasitoid, hyperparasitoid and endosymbiont species in aphids and mummies using a newly established molecular approach. Facultative endosymbiont infection rates were high across fields (~80%), independent of whether aphids were parasitized or unparasitized. Aphid mummies exhibited a significantly lower share of facultative endosymbiont infection (~38%). These findings suggest that facultative endosymbionts do not affect parasitoid oviposition behaviour, but decrease parasitoid survival in the host. Facultative endosymbiont infection rates were lower in mummies collected from fertilized compared to unfertilized plants, indicating that plant fertilization boosts the facultative endosymbiont protective effect. Furthermore, we found strong evidence for species‐specific and negative cascading effects of facultative endosymbionts on primary and hyperparasitoids, respectively. Facultative endosymbionts impacted parasitoid assemblages and increased the specialization of primary‐hyperparasitoid food webs: these effects were independent from and much stronger than other environmental factors. The current findings strongly suggest that facultative endosymbionts act as a driving force in aphid–parasitoid–hyperparasitoid networks: they shape insect community composition at different trophic levels and modulate, directly and indirectly, the interactions between aphids, parasitoids and their environment.

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    Journal of Animal Ecology
    Article . 2018 . Peer-reviewed
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    Journal of Animal Ecology
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      Journal of Animal Ecology
      Article . 2018 . Peer-reviewed
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      Journal of Animal Ecology
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    Authors: Horneck, G.; Walter, N.; Westall, F.; Grenfell, J.L.; +16 Authors

    Table of Contents 1. Introduction 1.1. The project AstRoMap within the Framework Programme for Research and Innovation (FP7) of the European Union 1.2. The European astrobiology environment and landscape in Europe 1.3. Setting the scene: timeline and astrobiology concepts 2. The Astrobiology Roadmap for Europe 3. Research Topic 1: Origin and Evolution of Planetary Systems 3.1. State of the art 3.2. Key objectives 3.3. Approach to achieve the key objectives 3.4. European strengths and needs 4. Research Topic 2: Origins of Organic Compounds in Space 4.1. State of the art 4.2. Key objectives 4.3. Approach to achieve the key objectives 4.4. European strengths and needs 5. Research Topic 3: Rock-Water-Carbon Interactions, Organic Synthesis on Earth, and Steps to Life 5.1. State of the art 5.2. Key objectives 5.3. Approach to achieve the key objectives 5.4. European strengths and needs 6. Research Topic 4: Life and Habitability 6.1. State of the art 6.2. Key objectives 6.3. Approach to achieve the key objectives 6.4. European strengths and needs 7. Research Topic 5: Biosignatures as Facilitating Life Detection 7.1. State of the art 7.2. Key objectives 7.3. Approach to achieve the key objectives 7.4. European strengths and needs 8. Conclusions and Recommendations 8.1. Cross-cutting issues of relevance 8.2. Towards a better coordination of astrobiology research in Europe—the need for a pan-European platform Acknowledgments References Abbreviations Used Abstract The European AstRoMap project (supported by the European Commission Seventh Framework Programme) surveyed the state of the art of astrobiology in Europe and beyond and produced the first European roadmap for astrobiology research. In the context of this roadmap, astrobiology is understood as the study of the origin, evolution, and distribution of life in the context of cosmic evolution; this includes habitability in the Solar System and beyond. The AstRoMap Roadmap identifies five research topics, specifies several key scientific objectives for each topic, and suggests ways to achieve all the objectives. The five AstRoMap Research Topics are • Research Topic 1: Origin and Evolution of Planetary Systems• Research Topic 2: Origins of Organic Compounds in Space• Research Topic 3: Rock-Water-Carbon Interactions, Organic Synthesis on Earth, and Steps to Life• Research Topic 4: Life and Habitability• Research Topic 5: Biosignatures as Facilitating Life Detection It is strongly recommended that steps be taken towards the definition and implementation of a European Astrobiology Platform (or Institute) to streamline and optimize the scientific return by using a coordinated infrastructure and funding system. Key Words: Astrobiology roadmap—Europe—Origin and evolution of life—Habitability—Life detection—Life in extreme environments. Astrobiology 16, 201–243.

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    Hal-Diderot
    Article . 2016
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    Authors: Praher, Daniela; Zimmermann, Bob; Dnyansagar, Rohit; Miller, David J.; +10 Authors

    S6_Spi_output.pdf

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    Authors: Kruse, Jens; Abraham, Marion; Santner, Jakob; Siebers, Meike; +13 Authors

    Phosphorus (P) is an indispensable element for all life on Earth and, during the past decade, concerns about the future of its global supply have stimulated much research on soil P and method development. This review provides an overview of advanced state-of-the-art methods currently used in soil P research. These involve bulk and spatially resolved spectroscopic and spectrometric P speciation methods (1 and 2D NMR, IR, Raman, Q-TOF MS/MS, high resolution-MS, NanoSIMS, XRF, XPS, (µ)XAS) as well as methods for assessing soil P reactions (sorption isotherms, quantum-chemical modeling, microbial biomass P, enzymes activity, DGT, 33P isotopic exchange, 18O isotope ratios). Required experimental set-ups and the potentials and limitations of individual methods present a guide for the selection of most suitable methods or combinations.

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    Authors: Armin Birner; Stephan Seiler; Nina Lackner; Susanne A Bengesser; +13 Authors

    Background Cerebral white matter lesions (WML) have been found in normal aging, vascular disease and several neuropsychiatric conditions. Correlations of WML with clinical parameters in BD have been described, but not with the number of affective episodes, illness duration, age of onset and Body Mass Index in a well characterized group of euthymic bipolar adults. Herein, we aimed to evaluate the associations between bipolar course of illness parameters and WML measured with volumetric analysis. Methods In a cross-sectional study 100 euthymic individuals with BD as well as 54 healthy controls (HC) were enrolled to undergo brain magnetic resonance imaging using 3T including a FLAIR sequence for volumetric assessment of WML-load using FSL-software. Additionally, clinical characteristics and psychometric measures including Structured Clinical Interview according to DSM-IV, Hamilton-Depression, Young Mania Rating Scale and Beck’s Depression Inventory were evaluated. Results Individuals with BD had significantly more (F = 3.968, p < .05) WML (Mdn = 3710mm3; IQR = 2961mm3) than HC (Mdn = 2185mm3; IQR = 1665mm3). BD men (Mdn = 4095mm3; IQR = 3295mm3) and BD women (Mdn = 3032mm3; IQR = 2816mm3) did not significantly differ as to the WML-load or the number and type of risk factors for WML. However, in men only, the number of manic/hypomanic episodes (r = 0.72; p < .001) as well as depressive episodes (r = 0.51; p < .001) correlated positively with WML-load. Conclusions WML-load strongly correlated with the number of manic episodes in male BD patients, suggesting that men might be more vulnerable to mania in the context of cerebral white matter changes.

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    Authors: Gratton, P; Trucchi, E; Trasatti, A; Riccarducci, G; +4 Authors

    All species concepts are rooted in reproductive, and ultimately genealogical, relations. Genetic data are thus the most important source of information for species delimitation. Current ease of access to genomic data and recent computational advances are blooming a plethora of coalescent-based species delimitation methods. Despite their utility as objective approaches to identify species boundaries, coalescent-based methods (1) rely on simplified demographic models that may fail to capture some attributes of biological species, (2) do not make explicit use of the geographic information contained in the data, and (3) are often computationally intensive. In this article, we present a case of species delimitation in the Erebia tyndarus species complex, a taxon regarded as a classic example of problematic taxonomic resolution. Our approach to species delimitation used genomic data to test predictions rooted in the biological species concept and in the criterion of coexistence in sympatry. We (1) obtained restriction-site associated DNA (RAD) sequencing data from a carefully designed sample, (2) applied two genotype clustering algorithms to identify genetic clusters, and (3) performed within-clusters and between-clusters analyses of isolation by distance as a test for intrinsic reproductive barriers. Comparison of our results with those from a Bayes factor delimitation coalescent-based analysis, showed that coalescent-based approaches may lead to overconfident splitting of allopatric populations, and indicated that incorrect species delimitation is likely to be inferred when an incomplete geographic sample is analyzed. While we acknowledge the theoretical justification and practical usefulness of coalescent-based species delimitation methods, our results stress that, even in the phylogenomic era, the toolkit for species delimitation should not dismiss more traditional, biologically grounded, approaches coupling genomic data with geographic information.

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    Systematic Biology
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    Authors: Suman Chatterjee; Nikolaus Frohner; Lukas Lechner; Robert Schöfbeck; +1 Authors

    We present a new tree boosting algorithm designed for the measurement of parameters in the context of effective field theory (EFT). To construct the algorithm, we interpret the optimized loss function of a traditional decision tree as the maximal Fisher information in Poisson counting experiments. We promote the interpretation to general EFT predictions and develop a suitable boosting method. The resulting ``Boosted Information Tree'' algorithm approximates the score, the derivative of the log-likelihood function with respect to the parameter. It thus provides a sufficient statistic in the vicinity of a reference point in parameter space where the estimator is trained. The training exploits per-event information of likelihood ratios for different theory parameter values available in the simulated EFT data sets. 23 pages, 3 figures. Updated with referee comments

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    Computer Physics Communications
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      Computer Physics Communications
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    Authors: Tiffany S. Slater; Kate Ashbrook; Jürgen Kriwet;

    AbstractThe evolution of modern sharks, skates and rays (Elasmobranchii) is largely enigmatic due to their possession of a labile cartilaginous skeleton; consequently, taxonomic assignment often depends on isolated teeth. Bullhead sharks (Heterodontiformes) are a group of basal neoselachians, thus their remains and relationships are integral to understanding elasmobranch evolution. Herein we fully describe †Paracestracion danieli – a bullhead shark from the Late Jurassic plattenkalks of Eichstätt, Germany (150–154 Ma) – for its inclusion in cladistic analysis (utilizing parsimonious principles) of morphological characters from complete †Paracestracion and Heterodontus fossil specimens as well as extant forms of the latter. The presence of two separate monophyletic clades within Heterodontiformes was confirmed, based on predominantly non‐dental characters, which show a strong divergence in body morphology between †Paracestracion and Heterodontus; the latter possessing a first dorsal fin and pectoral fins that are more anterior and pelvic fins that are more posterior. This study emphasizes the importance of including non‐dental features in heterodontiform systematics (as compared with the use of dental characters alone) and supports the erection of the family †Paracestracionidae. Further, phylogenetic analysis of molecular data from five extant species suggests that crown heterodontiforms arose from a diversification event 42.58 Ma off the west coast of the Americas.

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    Papers in Palaeontology
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