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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Aminat K. Alieva; Botagoz M. Nasibulina; Shima Bakhshalizadeh; Tatyana F. Kurochkina; +6 Authors

    This study reveals the diet of pike-perch from two habitats within the Tersko-Caspian region. The feeding habits of pike-perch in the Sulak and Terek rivers and Tersko-Caspian region were investigated based on 354 specimens sampled monthly from a commercial catch in 2019. Their diet consisted of different prey, with fish representing the most important prey group (up to 90%). Rutilus caspicus dominated with a frequency of occurrence of 20.5, and Aspius aspius, Perca fluviatilis, and Chondrostoma oxyrhynchum, had 13, 9.5, and 8.3%. In the earlier ages 1+ and 2+, zooplankton dominated, followed by mysids and chironomids, which continues into the older ages but at decreasing rates. Analysis of monthly variations in stomach fullness indicated that feeding intensity fluctuated in time, with the highest values in March–April, and lowest in September and November. It was found that the diet of pike-perch in the western Caspian changed considerably from season to season. They begin to actively feed after wintering and before, or even during, spawning period. The spectrum of the diet of Sander lucioperca includes more than 20 elements, mainly juveniles of commercially valuable fish. This fish is characterized by a relatively low ontogenetic diet diversity and flexibility, which makes it sensitive to environmental changes, including anthropogenically induced ones. This fish partially compensates for this disadvantage with its lifestyle, namely, its active foraging movements and migrations from fresh water to salt water and back, following its prey species.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Fishesarrow_drop_down
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Fishes
    Other literature type . Article . 2023 . Peer-reviewed
    License: CC BY
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    Fishes
    Article . 2023
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Fishesarrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      Fishes
      Other literature type . Article . 2023 . Peer-reviewed
      License: CC BY
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      Fishes
      Article . 2023
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Haputhantri, S; Villanueva, Ching-maria; Moreau, J;

    This study attempts to assemble and summarize existing information in order to build a general representation of the trophic interactions within the shallow coastal ecosystem of Sri Lanka. A multispecific ecosystem-based approach on trophic relationships and their possible variations was performed using ECOPATH. Thirty-nine functional groups were considered representing all trophic levels in the food web. Time-dynamic simulation was carried out using the ECOSIM routine to evaluate the impact of the 1998 El Nino event on key functional groups. Results show that the time needed for any impacted functional group to recover to its initial abundance increased with the trophic level. Two time-series data sets derived from commercial catch and effort statistics were used for validation of ECOSIM results. The El Nino simulation results validated by the time-series data confirmed the ability of the proposed multispecies model to describe the sudden environmental changes. Possible impacts due to increase of fishing effort were also simulated by separately considering frequently used fishing gears. The analysis revealed that small-mesh gillnet fishery operates independently from the other existing developing fisheries in the same area and can be managed accordingly. Fishing-effort simulations suggest that the increase of fishing intensity by small-mesh gillnets would contribute to the decline of small pelagic catch. This was also found to influence the overall catch. The present level of exploitation of small pelagic fishery resources does not seem sustainable. (C) 2007 Elsevier Ltd. All rights reserved.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ArchiMer - Instituti...arrow_drop_down
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    Estuarine Coastal and Shelf Science
    Article . 2008 . Peer-reviewed
    License: Elsevier TDM
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ArchiMer - Instituti...arrow_drop_down
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      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
      Estuarine Coastal and Shelf Science
      Article . 2008 . Peer-reviewed
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Abolfazl Narmani; Rémy Bertrand Teponno; Mahdi Arzanlou; Frank Surup; +6 Authors

    Abstract Chemical analysis of extracts from cultures of the plant pathogenic fungus Cytospora sp. strain CCTU A309 collected in Iran led to the isolation of two previously unreported heptanedioic acid derivatives namely (2R,3S) 2-hydroxy-3-phenyl-4-oxoheptanedioic acid (1) and (2S,3S) 2-hydroxy-3-phenyl-4-oxoheptanedioic acid (2) as diastereomers, four previously undescribed prenylated p-terphenyl quinones 3–6 in addition to five known metabolites. Their structures were elucidated on the basis of extensive spectroscopic analysis and high-resolution mass spectrometry. For metabolites 1 and 2, the absolute configurations at C-2 were deduced from comparison of the 1H NMR difference of their (S)- and (R)-phenylglycine methyl ester derivatives while the relative configurations were tentatively assigned by a J-based analysis and confirmed by comparison of 13C chemical shifts to literature data. The isolated compounds were tested for their cytotoxic, antimicrobial (including biofilm inhibition), antiviral, and nematicidal activities. While only moderate antimicrobial effects were observed, the terphenyl quinone derivatives 3–6 and leucomelone (10) exhibited significant cytotoxicity against the mouse fibroblast L929 and cervix carcinoma KB-3-1 cell lines with IC50 values ranging from 2.4 to 26 μg/mL. Furthermore, metabolites 4–6 showed interesting antiviral activity against hepatitis C virus (HCV).

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Fitoterapiaarrow_drop_down
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    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    Fitoterapia
    Article . 2019 . Peer-reviewed
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Fitoterapiaarrow_drop_down
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      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
      Fitoterapia
      Article . 2019 . Peer-reviewed
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Ansari-Pour, N; Moñino, Y; Duque, C; Gallego, N; +3 Authors

    The Palenque, a black community in rural Colombia, have an oral history of fugitive African slaves founding a free village near Cartagena in the seventeenth century. Recently, linguists have identified some 200 words in regular use that originate in a Kikongo language, with Yombe, mainly spoken in the Congo region, being the most likely source. The non-recombining portion of the Y chromosome (NRY) and mitochondrial DNA were analysed to establish whether there was greater similarity between present-day members of the Palenque and Yombe than between the Palenque and 42 other African groups (for all individuals,n= 2799) from which forced slaves might have been taken. NRY data are consistent with the linguistic evidence that Yombe is the most likely group from which the original male settlers of Palenque came. Mitochondrial DNA data suggested substantial maternal sub-Saharan African ancestry and a strong founder effect but did not associate Palenque with any particular African group. In addition, based on cultural data including inhabitants' claims of linguistic differences, it has been hypothesized that the two districts of the village (Abajo and Arriba) have different origins, with Arriba founded by men originating in Congo and Abajo by those born in Colombia. Although significant genetic structuring distinguished the two from each other, no supporting evidence for this hypothesis was found.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Europe PubMed Centra...arrow_drop_down
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    Europe PubMed Central
    Other literature type . 2016
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    UCL Discovery
    Article . 2016
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    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    Proceedings of the Royal Society B Biological Sciences
    Article . 2016 . Peer-reviewed
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Europe PubMed Centra...arrow_drop_down
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      Europe PubMed Central
      Other literature type . 2016
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      UCL Discovery
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      Proceedings of the Royal Society B Biological Sciences
      Article . 2016 . Peer-reviewed
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    Authors: Amir Reza Ghiami Azad; Kerry Kreitman; Michael D. Engelhardt; Todd A. Helwig; +1 Authors

    Abstract Many older bridges are constructed with structural systems consisting of a non-composite concrete deck over steel girders. A potentially economical method for strengthening these bridges is to develop composite action by attaching the existing concrete deck to the steel beams using post-installed shear connectors comprised of adhesive anchors. Because fatigue is one of the main concerns in designing bridges, investigating the fatigue properties of these post-installed shear connectors is crucial. Although the fatigue life of post-installed shear connectors has been explored through direct-shear tests, the actual fatigue performance of post-installed shear connectors in large-scale beam tests has not been extensively studied and may differ from component tests. The current paper describes the results of large-scale beam experiments on the fatigue performance of post-installed shear connectors. The results of this research indicate that adhesive anchor post-installed shear connectors have much better fatigue performance in beam tests compared to the previously reported fatigue test results based on direct-shear tests.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Journal of Construct...arrow_drop_down
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    Journal of Constructional Steel Research
    Article . 2019 . Peer-reviewed
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Journal of Construct...arrow_drop_down
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      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
      Journal of Constructional Steel Research
      Article . 2019 . Peer-reviewed
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    Authors: Kavousi, Javid; Goudarzi, Forough; Izadi, Mohammad; Gardner, Charlie J.;

    The conservation of biodiversity-and the vital ecosystem services it generates-is one of the greatest challenges humanity faces, yet the field faces drastic funding cuts as society realigns its priorities in the face of the COVID-19 pandemic. Here, we argue that diverting attention from conservation would, however, increase the risk of further global health crises because the emergence of novel infectious diseases is partially driven by global environmental change. As the discrepancy between conservation needs and society's willingness to pay for them grows, conservation will have to evolve to stay relevant in the age global change-induced human infectious disease. International audience

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    Authors: Alireza Neshani; Mohammad Reza Akbari Eidgahi; Hosna Zare; Kiarash Ghazvini;

    Regarding the spread of antibiotic-resistant infections in recent years, many studies have been conducted on antimicrobial peptides as an alternative drug. Unfortunately, there are fewer studies on marine antimicrobial peptides than other living organisms. In this study, Tilapia Piscidin 4 (TP4), one of the most efficient marine antimicrobial peptides that have been introduced so far, produced using the Pichia pastoris GS115 expression system. The TP4 sequence was first cloned to the pPIC9 vector and then transformed to the Pichia pastoris to integrate into the genome. The best expression conditions were obtained in a minimal protein-lacking medium of BMM, 1.5% methanol, pH of 6, and the time of 48 hours. Subsequently, the antimicrobial activity of the recombinant TP4 was evaluated on 12 gram-negative and 5 gram-positive common bacterial pathogens including sensitive and antibiotic-resistant strains and showed the widespectrum activity. The TP4 antimicrobial peptide can be used as a competitive candidate for antibiotics in the post-antibiotic era due to the broad-spectrum antibacterial effects. The production of TP4 by the explained method in this study was a low-cost process and could pave the way for future studies and therapeutic applications.

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    Authors: Patrick Phillips; Charles Baer;

    Abstract The hermaphroditic nematode Caenorhabditis elegans has been one of the primary model systems in biology since the 1970s, but only within the last two decades has this nematode also become a useful model for experimental evolution. Here, we outline the goals and major foci of experimental evolution with C. elegans and related species, such as C. briggsae and C. remanei, by discussing the principles of experimental design, and highlighting the strengths and limitations of Caenorhabditis as model systems. We then review three exemplars of Caenorhabditis experimental evolution studies, underlining representative evolution experiments that have addressed the: (1) maintenance of genetic variation; (2) role of natural selection during transitions from outcrossing to selfing, as well as the maintenance of mixed breeding modes during evolution; and (3) evolution of phenotypic plasticity and its role in adaptation to variable environments, including host–pathogen coevolution. We conclude by suggesting some future directions for which experimental evolution with Caenorhabditis would be particularly informative.

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    Genetics; OpenAPC Global Initiative
    Article . Conference object . 2017 . Peer-reviewed
    License: OUP Standard Publication Reuse
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    Genetics
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      Genetics; OpenAPC Global Initiative
      Article . Conference object . 2017 . Peer-reviewed
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    Authors: Mario Lebrato; Dieter Garbe-Schönberg; Marius N. Müller; Sonia Blanco-Ameijeiras; +40 Authors

    Seawater Mg:Ca and Sr:Ca ratios are biogeochemical parameters reflecting the Earth–ocean–atmosphere dynamic exchange of elements. The ratios’ dependence on the environment and organisms' biology facilitates their application in marine sciences. Here, we present a measured single-laboratory dataset, combined with previous data, to test the assumption of limited seawater Mg:Ca and Sr:Ca variability across marine environments globally. High variability was found in open-ocean upwelling and polar regions, shelves/neritic and river-influenced areas, where seawater Mg:Ca and Sr:Ca ratios range from ∼4.40 to 6.40 mmol:mol and ∼6.95 to 9.80 mmol:mol, respectively. Open-ocean seawater Mg:Ca is semiconservative (∼4.90 to 5.30 mol:mol), while Sr:Ca is more variable and nonconservative (∼7.70 to 8.80 mmol:mol); both ratios are nonconservative in coastal seas. Further, the Ca, Mg, and Sr elemental fluxes are connected to large total alkalinity deviations from International Association for the Physical Sciences of the Oceans (IAPSO) standard values. Because there is significant modern seawater Mg:Ca and Sr:Ca ratios variability across marine environments we cannot absolutely assume that fossil archives using taxa-specific proxies reflect true global seawater chemistry but rather taxa- and process-specific ecosystem variations, reflecting regional conditions. This variability could reconcile secular seawater Mg:Ca and Sr:Ca ratio reconstructions using different taxa and techniques by assuming an error of 1 to 1.50 mol:mol, and 1 to 1.90 mmol:mol, respectively. The modern ratios’ variability is similar to the reconstructed rise over 20 Ma (Neogene Period), nurturing the question of seminonconservative behavior of Ca, Mg, and Sr over modern Earth geological history with an overlooked environmental effect 12 pages, 5 figures, supporting information https://doi.org/10.1073/pnas.1918943117.-- Data Availability. Our published databases are publicly accessible for readers, and they are deposited at the NOAA NCEI at https://data.nodc.noaa.gov/cgi-bin/iso?id=gov.noaa.nodc:0171017.-- Correction for Lebrato et al., Global variability in seawater Mg:Ca and Sr:Ca ratios in the modern ocean; Proceedings of the National Academy of Sciences of the USA 118(49): e2119099118 (2021); doi: 10.1073/pnas.2119099118; http://hdl.handle.net/10261/258054.-- This is Pacific Marine Environmental Laboratory contribution number 5046 This study was developed under a grant from the Federal Ministry of Education and Research to D.G.-S. under contract 03F0722A, by the Kiel Cluster of Excellence “The Future Ocean” (D1067/87) to A.O. and M.L., and by the “European project on Ocean Acidification” (European Community’s Seventh Framework Programme FP7/2007-2013, grant agreement 211384) to A.O. and M.L. Additional funding was provided from project DOSMARES CTM2010-21810-C03-02, by the UK Natural Environment Research Council, to the National Oceanography Centre With the funding support of the ‘Severo Ochoa Centre of Excellence’ accreditation (CEX2019-000928-S), of the Spanish Research Agency (AEI) Peer reviewed

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    Brage IMR
    Article . 2020
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    Proceedings of the National Academy of Sciences
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    Horizon / Pleins textes
    Other literature type . 2020
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    Europe PubMed Central
    Other literature type . 2021
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    Authors: Chee Kong Yap; Razeff Shardin B. Mat Rejab; Wan Hee Cheng; Krishnan Kumar; +8 Authors
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    Advanced Materials Letters
    Article . 2023 . Peer-reviewed
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    Authors: Aminat K. Alieva; Botagoz M. Nasibulina; Shima Bakhshalizadeh; Tatyana F. Kurochkina; +6 Authors

    This study reveals the diet of pike-perch from two habitats within the Tersko-Caspian region. The feeding habits of pike-perch in the Sulak and Terek rivers and Tersko-Caspian region were investigated based on 354 specimens sampled monthly from a commercial catch in 2019. Their diet consisted of different prey, with fish representing the most important prey group (up to 90%). Rutilus caspicus dominated with a frequency of occurrence of 20.5, and Aspius aspius, Perca fluviatilis, and Chondrostoma oxyrhynchum, had 13, 9.5, and 8.3%. In the earlier ages 1+ and 2+, zooplankton dominated, followed by mysids and chironomids, which continues into the older ages but at decreasing rates. Analysis of monthly variations in stomach fullness indicated that feeding intensity fluctuated in time, with the highest values in March–April, and lowest in September and November. It was found that the diet of pike-perch in the western Caspian changed considerably from season to season. They begin to actively feed after wintering and before, or even during, spawning period. The spectrum of the diet of Sander lucioperca includes more than 20 elements, mainly juveniles of commercially valuable fish. This fish is characterized by a relatively low ontogenetic diet diversity and flexibility, which makes it sensitive to environmental changes, including anthropogenically induced ones. This fish partially compensates for this disadvantage with its lifestyle, namely, its active foraging movements and migrations from fresh water to salt water and back, following its prey species.

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    Fishes
    Other literature type . Article . 2023 . Peer-reviewed
    License: CC BY
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    Fishes
    Article . 2023
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      Other literature type . Article . 2023 . Peer-reviewed
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    Authors: Haputhantri, S; Villanueva, Ching-maria; Moreau, J;

    This study attempts to assemble and summarize existing information in order to build a general representation of the trophic interactions within the shallow coastal ecosystem of Sri Lanka. A multispecific ecosystem-based approach on trophic relationships and their possible variations was performed using ECOPATH. Thirty-nine functional groups were considered representing all trophic levels in the food web. Time-dynamic simulation was carried out using the ECOSIM routine to evaluate the impact of the 1998 El Nino event on key functional groups. Results show that the time needed for any impacted functional group to recover to its initial abundance increased with the trophic level. Two time-series data sets derived from commercial catch and effort statistics were used for validation of ECOSIM results. The El Nino simulation results validated by the time-series data confirmed the ability of the proposed multispecies model to describe the sudden environmental changes. Possible impacts due to increase of fishing effort were also simulated by separately considering frequently used fishing gears. The analysis revealed that small-mesh gillnet fishery operates independently from the other existing developing fisheries in the same area and can be managed accordingly. Fishing-effort simulations suggest that the increase of fishing intensity by small-mesh gillnets would contribute to the decline of small pelagic catch. This was also found to influence the overall catch. The present level of exploitation of small pelagic fishery resources does not seem sustainable. (C) 2007 Elsevier Ltd. All rights reserved.

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    Estuarine Coastal and Shelf Science
    Article . 2008 . Peer-reviewed
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      Estuarine Coastal and Shelf Science
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    Authors: Abolfazl Narmani; Rémy Bertrand Teponno; Mahdi Arzanlou; Frank Surup; +6 Authors

    Abstract Chemical analysis of extracts from cultures of the plant pathogenic fungus Cytospora sp. strain CCTU A309 collected in Iran led to the isolation of two previously unreported heptanedioic acid derivatives namely (2R,3S) 2-hydroxy-3-phenyl-4-oxoheptanedioic acid (1) and (2S,3S) 2-hydroxy-3-phenyl-4-oxoheptanedioic acid (2) as diastereomers, four previously undescribed prenylated p-terphenyl quinones 3–6 in addition to five known metabolites. Their structures were elucidated on the basis of extensive spectroscopic analysis and high-resolution mass spectrometry. For metabolites 1 and 2, the absolute configurations at C-2 were deduced from comparison of the 1H NMR difference of their (S)- and (R)-phenylglycine methyl ester derivatives while the relative configurations were tentatively assigned by a J-based analysis and confirmed by comparison of 13C chemical shifts to literature data. The isolated compounds were tested for their cytotoxic, antimicrobial (including biofilm inhibition), antiviral, and nematicidal activities. While only moderate antimicrobial effects were observed, the terphenyl quinone derivatives 3–6 and leucomelone (10) exhibited significant cytotoxicity against the mouse fibroblast L929 and cervix carcinoma KB-3-1 cell lines with IC50 values ranging from 2.4 to 26 μg/mL. Furthermore, metabolites 4–6 showed interesting antiviral activity against hepatitis C virus (HCV).

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    Fitoterapia
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    Fitoterapia
    Article . 2019 . Peer-reviewed
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      Fitoterapia
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    Authors: Ansari-Pour, N; Moñino, Y; Duque, C; Gallego, N; +3 Authors

    The Palenque, a black community in rural Colombia, have an oral history of fugitive African slaves founding a free village near Cartagena in the seventeenth century. Recently, linguists have identified some 200 words in regular use that originate in a Kikongo language, with Yombe, mainly spoken in the Congo region, being the most likely source. The non-recombining portion of the Y chromosome (NRY) and mitochondrial DNA were analysed to establish whether there was greater similarity between present-day members of the Palenque and Yombe than between the Palenque and 42 other African groups (for all individuals,n= 2799) from which forced slaves might have been taken. NRY data are consistent with the linguistic evidence that Yombe is the most likely group from which the original male settlers of Palenque came. Mitochondrial DNA data suggested substantial maternal sub-Saharan African ancestry and a strong founder effect but did not associate Palenque with any particular African group. In addition, based on cultural data including inhabitants' claims of linguistic differences, it has been hypothesized that the two districts of the village (Abajo and Arriba) have different origins, with Arriba founded by men originating in Congo and Abajo by those born in Colombia. Although significant genetic structuring distinguished the two from each other, no supporting evidence for this hypothesis was found.

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    Europe PubMed Central
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    UCL Discovery
    Article . 2016
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    Proceedings of the Royal Society B Biological Sciences
    Article . 2016 . Peer-reviewed
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      Proceedings of the Royal Society B Biological Sciences
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    Authors: Amir Reza Ghiami Azad; Kerry Kreitman; Michael D. Engelhardt; Todd A. Helwig; +1 Authors

    Abstract Many older bridges are constructed with structural systems consisting of a non-composite concrete deck over steel girders. A potentially economical method for strengthening these bridges is to develop composite action by attaching the existing concrete deck to the steel beams using post-installed shear connectors comprised of adhesive anchors. Because fatigue is one of the main concerns in designing bridges, investigating the fatigue properties of these post-installed shear connectors is crucial. Although the fatigue life of post-installed shear connectors has been explored through direct-shear tests, the actual fatigue performance of post-installed shear connectors in large-scale beam tests has not been extensively studied and may differ from component tests. The current paper describes the results of large-scale beam experiments on the fatigue performance of post-installed shear connectors. The results of this research indicate that adhesive anchor post-installed shear connectors have much better fatigue performance in beam tests compared to the previously reported fatigue test results based on direct-shear tests.

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    Journal of Constructional Steel Research
    Article . 2019 . Peer-reviewed
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      Journal of Constructional Steel Research
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    Authors: Kavousi, Javid; Goudarzi, Forough; Izadi, Mohammad; Gardner, Charlie J.;

    The conservation of biodiversity-and the vital ecosystem services it generates-is one of the greatest challenges humanity faces, yet the field faces drastic funding cuts as society realigns its priorities in the face of the COVID-19 pandemic. Here, we argue that diverting attention from conservation would, however, increase the risk of further global health crises because the emergence of novel infectious diseases is partially driven by global environmental change. As the discrepancy between conservation needs and society's willingness to pay for them grows, conservation will have to evolve to stay relevant in the age global change-induced human infectious disease. International audience

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    Authors: Alireza Neshani; Mohammad Reza Akbari Eidgahi; Hosna Zare; Kiarash Ghazvini;

    Regarding the spread of antibiotic-resistant infections in recent years, many studies have been conducted on antimicrobial peptides as an alternative drug. Unfortunately, there are fewer studies on marine antimicrobial peptides than other living organisms. In this study, Tilapia Piscidin 4 (TP4), one of the most efficient marine antimicrobial peptides that have been introduced so far, produced using the Pichia pastoris GS115 expression system. The TP4 sequence was first cloned to the pPIC9 vector and then transformed to the Pichia pastoris to integrate into the genome. The best expression conditions were obtained in a minimal protein-lacking medium of BMM, 1.5% methanol, pH of 6, and the time of 48 hours. Subsequently, the antimicrobial activity of the recombinant TP4 was evaluated on 12 gram-negative and 5 gram-positive common bacterial pathogens including sensitive and antibiotic-resistant strains and showed the widespectrum activity. The TP4 antimicrobial peptide can be used as a competitive candidate for antibiotics in the post-antibiotic era due to the broad-spectrum antibacterial effects. The production of TP4 by the explained method in this study was a low-cost process and could pave the way for future studies and therapeutic applications.

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    Authors: Patrick Phillips; Charles Baer;

    Abstract The hermaphroditic nematode Caenorhabditis elegans has been one of the primary model systems in biology since the 1970s, but only within the last two decades has this nematode also become a useful model for experimental evolution. Here, we outline the goals and major foci of experimental evolution with C. elegans and related species, such as C. briggsae and C. remanei, by discussing the principles of experimental design, and highlighting the strengths and limitations of Caenorhabditis as model systems. We then review three exemplars of Caenorhabditis experimental evolution studies, underlining representative evolution experiments that have addressed the: (1) maintenance of genetic variation; (2) role of natural selection during transitions from outcrossing to selfing, as well as the maintenance of mixed breeding modes during evolution; and (3) evolution of phenotypic plasticity and its role in adaptation to variable environments, including host–pathogen coevolution. We conclude by suggesting some future directions for which experimental evolution with Caenorhabditis would be particularly informative.

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    Genetics; OpenAPC Global Initiative
    Article . Conference object . 2017 . Peer-reviewed
    License: OUP Standard Publication Reuse
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    Genetics
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      Genetics; OpenAPC Global Initiative
      Article . Conference object . 2017 . Peer-reviewed
      License: OUP Standard Publication Reuse
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      Genetics
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    Authors: Mario Lebrato; Dieter Garbe-Schönberg; Marius N. Müller; Sonia Blanco-Ameijeiras; +40 Authors

    Seawater Mg:Ca and Sr:Ca ratios are biogeochemical parameters reflecting the Earth–ocean–atmosphere dynamic exchange of elements. The ratios’ dependence on the environment and organisms' biology facilitates their application in marine sciences. Here, we present a measured single-laboratory dataset, combined with previous data, to test the assumption of limited seawater Mg:Ca and Sr:Ca variability across marine environments globally. High variability was found in open-ocean upwelling and polar regions, shelves/neritic and river-influenced areas, where seawater Mg:Ca and Sr:Ca ratios range from ∼4.40 to 6.40 mmol:mol and ∼6.95 to 9.80 mmol:mol, respectively. Open-ocean seawater Mg:Ca is semiconservative (∼4.90 to 5.30 mol:mol), while Sr:Ca is more variable and nonconservative (∼7.70 to 8.80 mmol:mol); both ratios are nonconservative in coastal seas. Further, the Ca, Mg, and Sr elemental fluxes are connected to large total alkalinity deviations from International Association for the Physical Sciences of the Oceans (IAPSO) standard values. Because there is significant modern seawater Mg:Ca and Sr:Ca ratios variability across marine environments we cannot absolutely assume that fossil archives using taxa-specific proxies reflect true global seawater chemistry but rather taxa- and process-specific ecosystem variations, reflecting regional conditions. This variability could reconcile secular seawater Mg:Ca and Sr:Ca ratio reconstructions using different taxa and techniques by assuming an error of 1 to 1.50 mol:mol, and 1 to 1.90 mmol:mol, respectively. The modern ratios’ variability is similar to the reconstructed rise over 20 Ma (Neogene Period), nurturing the question of seminonconservative behavior of Ca, Mg, and Sr over modern Earth geological history with an overlooked environmental effect 12 pages, 5 figures, supporting information https://doi.org/10.1073/pnas.1918943117.-- Data Availability. Our published databases are publicly accessible for readers, and they are deposited at the NOAA NCEI at https://data.nodc.noaa.gov/cgi-bin/iso?id=gov.noaa.nodc:0171017.-- Correction for Lebrato et al., Global variability in seawater Mg:Ca and Sr:Ca ratios in the modern ocean; Proceedings of the National Academy of Sciences of the USA 118(49): e2119099118 (2021); doi: 10.1073/pnas.2119099118; http://hdl.handle.net/10261/258054.-- This is Pacific Marine Environmental Laboratory contribution number 5046 This study was developed under a grant from the Federal Ministry of Education and Research to D.G.-S. under contract 03F0722A, by the Kiel Cluster of Excellence “The Future Ocean” (D1067/87) to A.O. and M.L., and by the “European project on Ocean Acidification” (European Community’s Seventh Framework Programme FP7/2007-2013, grant agreement 211384) to A.O. and M.L. Additional funding was provided from project DOSMARES CTM2010-21810-C03-02, by the UK Natural Environment Research Council, to the National Oceanography Centre With the funding support of the ‘Severo Ochoa Centre of Excellence’ accreditation (CEX2019-000928-S), of the Spanish Research Agency (AEI) Peer reviewed

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    Brage IMR
    Article . 2020
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    Proceedings of the National Academy of Sciences
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    Horizon / Pleins textes
    Other literature type . 2020
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    Europe PubMed Central
    Other literature type . 2021
    Data sources: PubMed Central
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    Authors: Chee Kong Yap; Razeff Shardin B. Mat Rejab; Wan Hee Cheng; Krishnan Kumar; +8 Authors
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    Advanced Materials Letters
    Article . 2023 . Peer-reviewed
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      Advanced Materials Letters
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