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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Ryabov, Alexey; Kerimoglu, Onur; Litchman, Elena; Olenina, Irina; +5 Authors

    Organisms’ size and shape have a profound influence on ecophysiological performance and evolutionary fitness, suggesting a link between morphology and diversity. While unimodal relationships between size and species richness were found for many taxa(1–4), much less is known on how richness is related to shape, in particular in the microbial realm. Here we analyse a novel globally extensive data set of marine unicellular phytoplankton, the major group of photosynthetic microbes, which exhibit an astounding diversity of cell sizes and shapes(5). We quantify the variation in size and shape and explore their effects on taxonomic diversity(6, 7). We find that cells of intermediate volume exhibit the greatest shape variation, with shapes ranging from oblate to extremely elongated forms, while very small and large cells are mostly compact (e.g., spherical or cubic). We show that cell shape has a strong effect on phytoplankton diversity, comparable in magnitude to the effect of cell volume, with both traits explaining up to 92% of the variance in phytoplankton diversity. Species richness decays exponentially with cell elongation and displays a log-normal dependence on cell volume, peaking for compact cells of intermediate volume. Our findings highlight different selective pressures and constraints on phytoplankton of different geometry and improve our understanding of the evolutionary rules of life.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Hereon Publication D...arrow_drop_down
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    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    https://epic.awi.de/id/eprint/...
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    Ecology Letters
    Article . 2021 . Peer-reviewed
    License: CC BY
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    Ecology Letters
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    Ecology Letters
    Article . 2020
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Hereon Publication D...arrow_drop_down
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      Ecology Letters
      Article . 2021 . Peer-reviewed
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      Ecology Letters
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      Ecology Letters
      Article . 2020
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Chris Ware; Jørgen Berge; Anders Jelmert; Steffen M. Olsen; +6 Authors

    Several decades of research on invasive marine species have yielded a broad understanding of the nature of species invasion mechanisms and associated threats globally. However, this is not true of the Arctic, a region where ongoing climatic changes may promote species invasion. Here, we evaluated risks associated with non-indigenous propagule loads discharged with ships' ballast water to the high-Arctic archipelago, Svalbard, as a case study for the wider Arctic. We sampled and identified transferred propagules using traditional and DNA barcoding techniques. We then assessed the suitability of the Svalbard coast for non-indigenous species under contemporary and future climate scenarios using ecophysiological models based on critical temperature and salinity reproductive thresholds. Ships discharging ballast water in Svalbard carried high densities of zooplankton (mean 1522 ± 335 SE individuals m−3), predominately comprised of indigenous species. Ballast water exchange did not prevent non-indigenous species introduction. Non-indigenous coastal species were present in all except one of 16 ballast water samples (mean 144 ± 67 SE individuals m−3), despite five of the eight ships exchanging ballast water en route. Of a total of 73 taxa, 36 species including 23 non-indigenous species were identified. Of those 23, sufficient data permitted evaluation of the current and future colonization potential for eight widely known invaders. With the exception of one of these species, modelled suitability indicated that the coast of Svalbard is unsuitable presently; under the 2100 Representative Concentration Pathway (RCP) 8·5 climate scenario, however, modelled suitability will favour colonization for six species. Synthesis and applications. We show that current ballast water management practices do not prevent non-indigenous species from being transferred to the Arctic. Consequences of these shortcomings will be shipping-route dependent, but will likely magnify over time: our models indicate future conditions will favour the colonization of non-indigenous species Arctic-wide. Invasion threats will be greatest where shipping transfers organisms across biogeographic realms, and for these shipping routes ballast water treatment technologies may be required to prevent impacts. Our results also highlight critical gaps in our understanding of ballast water management efficacy and prioritization. Thereby, our study provides an agenda for research and policy development. Published version. Source at http://doi.org/10.1111/1365-2664.12566.

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    Journal of Applied Ecology
    Article . 2015 . Peer-reviewed
    License: CC BY
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    Journal of Applied Ecology
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      Journal of Applied Ecology
      Article . 2015 . Peer-reviewed
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      Journal of Applied Ecology
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    Authors: Polyakov, Igor; Walsh, David; Dmitrenko, Igor; Colony, Roger L.; +1 Authors

    This study has been motivated by reports of extraordinary change in the Arctic Ocean observed in recent decades. Most of these observations are based on synoptic measurements, while evaluation of anomalies requires an understanding of the underlying long‐term variability. Historical climatologies give reference means, and while these datasets are a reliable source of the mean Atlantic Layer temperature, they significantly underestimate variability. Using historical data, we calculated statistical parameters for selected Arctic Ocean regions. They demonstrate a high level of Atlantic Layer temperature variability in the Nansen Basin and sea‐surface salinity fluctuations on the Siberian shelf and the Amundsen Basin. These estimates suggest strong limitations on our ability to define amplitudes of anomalies by comparing recent synoptic measurements with climatologies, especially for regions characterized by strong variability.

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    Geophysical Research Letters
    Article . 2003 . Peer-reviewed
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      Geophysical Research Letters
      Article . 2003 . Peer-reviewed
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    Authors: Aminat K. Alieva; Botagoz M. Nasibulina; Shima Bakhshalizadeh; Tatyana F. Kurochkina; +6 Authors

    This study reveals the diet of pike-perch from two habitats within the Tersko-Caspian region. The feeding habits of pike-perch in the Sulak and Terek rivers and Tersko-Caspian region were investigated based on 354 specimens sampled monthly from a commercial catch in 2019. Their diet consisted of different prey, with fish representing the most important prey group (up to 90%). Rutilus caspicus dominated with a frequency of occurrence of 20.5, and Aspius aspius, Perca fluviatilis, and Chondrostoma oxyrhynchum, had 13, 9.5, and 8.3%. In the earlier ages 1+ and 2+, zooplankton dominated, followed by mysids and chironomids, which continues into the older ages but at decreasing rates. Analysis of monthly variations in stomach fullness indicated that feeding intensity fluctuated in time, with the highest values in March–April, and lowest in September and November. It was found that the diet of pike-perch in the western Caspian changed considerably from season to season. They begin to actively feed after wintering and before, or even during, spawning period. The spectrum of the diet of Sander lucioperca includes more than 20 elements, mainly juveniles of commercially valuable fish. This fish is characterized by a relatively low ontogenetic diet diversity and flexibility, which makes it sensitive to environmental changes, including anthropogenically induced ones. This fish partially compensates for this disadvantage with its lifestyle, namely, its active foraging movements and migrations from fresh water to salt water and back, following its prey species.

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    Fishes
    Other literature type . Article . 2023 . Peer-reviewed
    License: CC BY
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    Fishes
    Article . 2023
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      Fishes
      Other literature type . Article . 2023 . Peer-reviewed
      License: CC BY
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      Fishes
      Article . 2023
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    Authors: Ekaterina D. Badaeva; N. N. Chikida; Andrey N Fisenko; Sergei A. Surzhikov; +4 Authors

    Aegilops columnaris Zhuk. is tetraploid grass species (2n = 4x = 28, UcUcXcXc) closely related to Ae. neglecta and growing in Western Asia and a western part of the Fertile Crescent. Genetic diversity of Ae. columnaris was assessed using C-banding, FISH, nuclear and chloroplast (cp) DNA analyses, and gliadin electrophoresis. Cytogenetically Ae. columnaris was subdivided into two groups, C-I and C-II, showing different karyotype structure, C-banding, and FISH patterns. C-I group was more similar to Ae. neglecta. All types of markers revealed significant heterogeneity in C-II group, although group C-I was also polymorphic. Two chromosomal groups were consistent with plastogroups identified in a current study based on sequencing of three chloroplast intergenic spacer regions. The similarity of group C-I of Ae. columnaris with Ae. neglecta and their distinctness from C-II indicate that divergence of the C-I group was associated with minor genome modifications. Group C-II could emerge from C-I relatively recently, probably due to introgression from another Aegilops species followed by a reorganization of the parental genomes. Most C-II accessions were collected from a very narrow geographic region, and they might originate from a common ancestor. We suggest that the C-II group is at the initial stage of species divergence and undergoing an extensive speciation process.

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    Plants
    Other literature type . Article . 2021 . Peer-reviewed
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    Plants
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      Plants
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      Plants
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    Authors: Belanger, G.; Boudjema, F.; Brun, P.; Pukhov, A.; +3 Authors

    We present a new module of micrOMEGAs devoted to the computation of indirect signals from dark matter annihilation in any new model with a stable weakly interacting particle. The code provides the mass spectrum, cross-sections, relic density and exotic fluxes of gamma rays, positrons and antiprotons. The propagation of charged particles in the Galactic halo is handled with a new module that allows to easily modify the propagation parameters. 24 pages, 6 figures, typos corrected, acknowledgements modified International audience

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    arXiv.org e-Print Archive
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    Computer Physics Communications
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      Computer Physics Communications
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    Authors: Laura S. Epp; Stefan Kruse; Nadja J. Kath; Kathleen R. Stoof-Leichsenring; +3 Authors

    Changes in species' distributions are classically projected based on their climate envelopes. For Siberian forests, which have a tremendous significance for vegetation-climate feedbacks, this implies future shifts of each of the forest-forming larch (Larix) species to the north-east. However, in addition to abiotic factors, reliable projections must assess the role of historical biogeography and biotic interactions. Here, we use sedimentary ancient DNA and individual-based modelling to investigate the distribution of larch species and mitochondrial haplotypes through space and time across the treeline ecotone on the southern Taymyr peninsula, which at the same time presents a boundary area of two larch species. We find spatial and temporal patterns, which suggest that forest density is the most influential driver determining the precise distribution of species and mitochondrial haplotypes. This suggests a strong influence of competition on the species' range shifts. These findings imply possible climate change outcomes that are directly opposed to projections based purely on climate envelopes. Investigations of such fine-scale processes of biodiversity change through time are possible using paleoenvironmental DNA, which is available much more readily than visible fossils and can provide information at a level of resolution that is not reached in classical palaeoecology. published

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    Publikationsserver der Universität Potsdam
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    Authors: S. Belov; Lev Dudko; D. Kekelidze; A. Sherstnev;

    In this paper we describe a HepML format and a corresponding C++ library developed for keeping complete description of parton level events in a unified and flexible form. HepML tags contain enough information to understand what kind of physics the simulated events describe and how the events have been prepared. A HepML block can be included into event files in the LHEF format. The structure of the HepML block is described by means of several XML Schemas. The Schemas define necessary information for the HepML block and how this information should be located within the block. The library libhepml is a C++ library intended for parsing and serialization of HepML tags, and representing the HepML block in computer memory. The library is an API for external software. For example, Matrix Element Monte Carlo event generators can use the library for preparing and writing a header of a LHEF file in the form of HepML tags. In turn, Showering and Hadronization event generators can parse the HepML header and get the information in the form of C++ classes. libhepml can be used in C++, C, and Fortran programs. All necessary parts of HepML have been prepared and we present the project to the HEP community. Comment: 21 pages, 4 eps figures, elsart.cls

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      Computer Physics Communications
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    Authors: Alexandre Supply; Jacqueline Boutin; Jean-Luc Vergely; Nicolas Kolodziejczyk; +3 Authors

    Since 2010, the Soil Moisture and Ocean Salinity (SMOS) satellite mission monitors the earth emission at L-Band. It provides the longest time series of Sea Surface Salinity (SSS) from space over the global ocean. However, the SSS retrieval at high latitudes is a challenge because of the low sensitivity L-Band radiometric measurements to SSS in cold waters and to the contamination of SMOS measurements by the vicinity of continents, of sea ice and of Radio Frequency Interferences. In this paper, we assess the quality of weekly SSS fields derived from swath-ordered instantaneous SMOS SSS (so called Level 2) distributed by the European Space Agency. These products are filtered according to new criteria. We use the pseudo-dielectric constant retrieved from SMOS brightness temperatures to filter SSS pixels polluted by sea ice. We identify that the dielectric constant model and the sea surface temperature auxiliary parameter used as prior information in the SMOS SSS retrieval induce significant systematic errors at low temperatures. We propose a novel empirical correction to mitigate those sources of errors at high latitudes.Comparisons with in-situ measurements ranging from 1 to 11 m depths spotlight huge vertical stratification in fresh regions. This emphasizes the need to consider in-situ salinity as close as possible to the sea surface when validating L-band radiometric SSS which are representative of the first top centimeter.SSS Standard deviation of differences (STDD) between weekly SMOS SSS and in-situ near surface salinity significantly decrease after applying the SSS correction, from 1.46 pss to 1.28 pss. The correlation between new SMOS SSS and in-situ near surface salinity reaches 0.94. SMOS estimates better capture SSS variability in the Arctic Ocean in comparison to TOPAZ reanalysis (STDD between TOPAZ and in-situ SSS = 1.86 pss), particularly in river plumes with very large SSS spatial gradients. International audience

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    OceanRep
    Article . 2020 . Peer-reviewed
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    Remote Sensing of Environment
    Article . 2020 . Peer-reviewed
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      Remote Sensing of Environment
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    Authors: Khassoum Correa; Eric Machu; Julien Brajard; Daouda Diouf; +2 Authors

    The Sahara desert is a major global source of dust that is mostly transported southwest over the ocean off West Africa. The presence of this dust impacts the remote sensing of ocean surface properties. These aerosols have absorbing properties that are poorly accounted for in the standard ocean color data processing algorithm. This can result in an overestimation of the atmospheric contribution to the ocean color signal and consequently an underestimation of the oceanic contribution. A two-step algorithm initially applied to the Sea-viewing Wide field-of-view Sensor (SeaWiFS) data was adapted to the Moderate Resolution Imaging Spectroradiometer (MODIS-Aqua) sensor in the Northwest African region. The Northwest African region is a very productive region, where pelagic resources are an important socio-economic sector. Improving atmospheric correction of ocean color products is, thus, of particular interest for this oceanic region. The two-step approach of classifying the top-of-atmosphere radiance spectra for a better estimate of aerosol type on the one hand, and using an optimization method to fit the parameters of these aerosols and chlorophyll-a concentration (Chla) on the other hand, allows for a better representation of the optical thickness, a correction of the marine reflectance spectrum, and an increase in the spatio-temporal coverage of the area. To the extent that the properties of the water color signal are improved by this data processing, the Chla estimates should also be improved by this approach. However, it is difficult to conclude on this point from the available in situ observations. International audience WOS:001038809300001

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    Remote Sensing
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    Authors: Ryabov, Alexey; Kerimoglu, Onur; Litchman, Elena; Olenina, Irina; +5 Authors

    Organisms’ size and shape have a profound influence on ecophysiological performance and evolutionary fitness, suggesting a link between morphology and diversity. While unimodal relationships between size and species richness were found for many taxa(1–4), much less is known on how richness is related to shape, in particular in the microbial realm. Here we analyse a novel globally extensive data set of marine unicellular phytoplankton, the major group of photosynthetic microbes, which exhibit an astounding diversity of cell sizes and shapes(5). We quantify the variation in size and shape and explore their effects on taxonomic diversity(6, 7). We find that cells of intermediate volume exhibit the greatest shape variation, with shapes ranging from oblate to extremely elongated forms, while very small and large cells are mostly compact (e.g., spherical or cubic). We show that cell shape has a strong effect on phytoplankton diversity, comparable in magnitude to the effect of cell volume, with both traits explaining up to 92% of the variance in phytoplankton diversity. Species richness decays exponentially with cell elongation and displays a log-normal dependence on cell volume, peaking for compact cells of intermediate volume. Our findings highlight different selective pressures and constraints on phytoplankton of different geometry and improve our understanding of the evolutionary rules of life.

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    Ecology Letters
    Article . 2021 . Peer-reviewed
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    Ecology Letters
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    Ecology Letters
    Article . 2020
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      Ecology Letters
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      Ecology Letters
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      Ecology Letters
      Article . 2020
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    Authors: Chris Ware; Jørgen Berge; Anders Jelmert; Steffen M. Olsen; +6 Authors

    Several decades of research on invasive marine species have yielded a broad understanding of the nature of species invasion mechanisms and associated threats globally. However, this is not true of the Arctic, a region where ongoing climatic changes may promote species invasion. Here, we evaluated risks associated with non-indigenous propagule loads discharged with ships' ballast water to the high-Arctic archipelago, Svalbard, as a case study for the wider Arctic. We sampled and identified transferred propagules using traditional and DNA barcoding techniques. We then assessed the suitability of the Svalbard coast for non-indigenous species under contemporary and future climate scenarios using ecophysiological models based on critical temperature and salinity reproductive thresholds. Ships discharging ballast water in Svalbard carried high densities of zooplankton (mean 1522 ± 335 SE individuals m−3), predominately comprised of indigenous species. Ballast water exchange did not prevent non-indigenous species introduction. Non-indigenous coastal species were present in all except one of 16 ballast water samples (mean 144 ± 67 SE individuals m−3), despite five of the eight ships exchanging ballast water en route. Of a total of 73 taxa, 36 species including 23 non-indigenous species were identified. Of those 23, sufficient data permitted evaluation of the current and future colonization potential for eight widely known invaders. With the exception of one of these species, modelled suitability indicated that the coast of Svalbard is unsuitable presently; under the 2100 Representative Concentration Pathway (RCP) 8·5 climate scenario, however, modelled suitability will favour colonization for six species. Synthesis and applications. We show that current ballast water management practices do not prevent non-indigenous species from being transferred to the Arctic. Consequences of these shortcomings will be shipping-route dependent, but will likely magnify over time: our models indicate future conditions will favour the colonization of non-indigenous species Arctic-wide. Invasion threats will be greatest where shipping transfers organisms across biogeographic realms, and for these shipping routes ballast water treatment technologies may be required to prevent impacts. Our results also highlight critical gaps in our understanding of ballast water management efficacy and prioritization. Thereby, our study provides an agenda for research and policy development. Published version. Source at http://doi.org/10.1111/1365-2664.12566.

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    Journal of Applied Ecology
    Article . 2015 . Peer-reviewed
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    Journal of Applied Ecology
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      Journal of Applied Ecology
      Article . 2015 . Peer-reviewed
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      Journal of Applied Ecology
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    Authors: Polyakov, Igor; Walsh, David; Dmitrenko, Igor; Colony, Roger L.; +1 Authors

    This study has been motivated by reports of extraordinary change in the Arctic Ocean observed in recent decades. Most of these observations are based on synoptic measurements, while evaluation of anomalies requires an understanding of the underlying long‐term variability. Historical climatologies give reference means, and while these datasets are a reliable source of the mean Atlantic Layer temperature, they significantly underestimate variability. Using historical data, we calculated statistical parameters for selected Arctic Ocean regions. They demonstrate a high level of Atlantic Layer temperature variability in the Nansen Basin and sea‐surface salinity fluctuations on the Siberian shelf and the Amundsen Basin. These estimates suggest strong limitations on our ability to define amplitudes of anomalies by comparing recent synoptic measurements with climatologies, especially for regions characterized by strong variability.

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    Geophysical Research Letters
    Article . 2003 . Peer-reviewed
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      Geophysical Research Letters
      Article . 2003 . Peer-reviewed
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    Authors: Aminat K. Alieva; Botagoz M. Nasibulina; Shima Bakhshalizadeh; Tatyana F. Kurochkina; +6 Authors

    This study reveals the diet of pike-perch from two habitats within the Tersko-Caspian region. The feeding habits of pike-perch in the Sulak and Terek rivers and Tersko-Caspian region were investigated based on 354 specimens sampled monthly from a commercial catch in 2019. Their diet consisted of different prey, with fish representing the most important prey group (up to 90%). Rutilus caspicus dominated with a frequency of occurrence of 20.5, and Aspius aspius, Perca fluviatilis, and Chondrostoma oxyrhynchum, had 13, 9.5, and 8.3%. In the earlier ages 1+ and 2+, zooplankton dominated, followed by mysids and chironomids, which continues into the older ages but at decreasing rates. Analysis of monthly variations in stomach fullness indicated that feeding intensity fluctuated in time, with the highest values in March–April, and lowest in September and November. It was found that the diet of pike-perch in the western Caspian changed considerably from season to season. They begin to actively feed after wintering and before, or even during, spawning period. The spectrum of the diet of Sander lucioperca includes more than 20 elements, mainly juveniles of commercially valuable fish. This fish is characterized by a relatively low ontogenetic diet diversity and flexibility, which makes it sensitive to environmental changes, including anthropogenically induced ones. This fish partially compensates for this disadvantage with its lifestyle, namely, its active foraging movements and migrations from fresh water to salt water and back, following its prey species.

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    Fishes
    Other literature type . Article . 2023 . Peer-reviewed
    License: CC BY
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    Fishes
    Article . 2023
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      Fishes
      Other literature type . Article . 2023 . Peer-reviewed
      License: CC BY
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      Fishes
      Article . 2023
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    Authors: Ekaterina D. Badaeva; N. N. Chikida; Andrey N Fisenko; Sergei A. Surzhikov; +4 Authors

    Aegilops columnaris Zhuk. is tetraploid grass species (2n = 4x = 28, UcUcXcXc) closely related to Ae. neglecta and growing in Western Asia and a western part of the Fertile Crescent. Genetic diversity of Ae. columnaris was assessed using C-banding, FISH, nuclear and chloroplast (cp) DNA analyses, and gliadin electrophoresis. Cytogenetically Ae. columnaris was subdivided into two groups, C-I and C-II, showing different karyotype structure, C-banding, and FISH patterns. C-I group was more similar to Ae. neglecta. All types of markers revealed significant heterogeneity in C-II group, although group C-I was also polymorphic. Two chromosomal groups were consistent with plastogroups identified in a current study based on sequencing of three chloroplast intergenic spacer regions. The similarity of group C-I of Ae. columnaris with Ae. neglecta and their distinctness from C-II indicate that divergence of the C-I group was associated with minor genome modifications. Group C-II could emerge from C-I relatively recently, probably due to introgression from another Aegilops species followed by a reorganization of the parental genomes. Most C-II accessions were collected from a very narrow geographic region, and they might originate from a common ancestor. We suggest that the C-II group is at the initial stage of species divergence and undergoing an extensive speciation process.

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    Plants
    Other literature type . Article . 2021 . Peer-reviewed
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    DOAJ
    Article . 2021
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    Plants
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    Plants
    Article . 2021
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      Plants
      Other literature type . Article . 2021 . Peer-reviewed
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      DOAJ
      Article . 2021
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      Plants
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      Plants
      Article . 2021
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    Authors: Belanger, G.; Boudjema, F.; Brun, P.; Pukhov, A.; +3 Authors

    We present a new module of micrOMEGAs devoted to the computation of indirect signals from dark matter annihilation in any new model with a stable weakly interacting particle. The code provides the mass spectrum, cross-sections, relic density and exotic fluxes of gamma rays, positrons and antiprotons. The propagation of charged particles in the Galactic halo is handled with a new module that allows to easily modify the propagation parameters. 24 pages, 6 figures, typos corrected, acknowledgements modified International audience

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    arXiv.org e-Print Archive
    Other literature type . Preprint . 2010
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    Computer Physics Communications
    Article . 2011 . Peer-reviewed
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    Article . 2011
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    https://doi.org/10.48550/arxiv...
    Article . 2010
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      arXiv.org e-Print Archive
      Other literature type . Preprint . 2010
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      Computer Physics Communications
      Article . 2011 . Peer-reviewed
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      Article . 2011
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    Authors: Laura S. Epp; Stefan Kruse; Nadja J. Kath; Kathleen R. Stoof-Leichsenring; +3 Authors

    Changes in species' distributions are classically projected based on their climate envelopes. For Siberian forests, which have a tremendous significance for vegetation-climate feedbacks, this implies future shifts of each of the forest-forming larch (Larix) species to the north-east. However, in addition to abiotic factors, reliable projections must assess the role of historical biogeography and biotic interactions. Here, we use sedimentary ancient DNA and individual-based modelling to investigate the distribution of larch species and mitochondrial haplotypes through space and time across the treeline ecotone on the southern Taymyr peninsula, which at the same time presents a boundary area of two larch species. We find spatial and temporal patterns, which suggest that forest density is the most influential driver determining the precise distribution of species and mitochondrial haplotypes. This suggests a strong influence of competition on the species' range shifts. These findings imply possible climate change outcomes that are directly opposed to projections based purely on climate envelopes. Investigations of such fine-scale processes of biodiversity change through time are possible using paleoenvironmental DNA, which is available much more readily than visible fossils and can provide information at a level of resolution that is not reached in classical palaeoecology. published

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    Authors: S. Belov; Lev Dudko; D. Kekelidze; A. Sherstnev;

    In this paper we describe a HepML format and a corresponding C++ library developed for keeping complete description of parton level events in a unified and flexible form. HepML tags contain enough information to understand what kind of physics the simulated events describe and how the events have been prepared. A HepML block can be included into event files in the LHEF format. The structure of the HepML block is described by means of several XML Schemas. The Schemas define necessary information for the HepML block and how this information should be located within the block. The library libhepml is a C++ library intended for parsing and serialization of HepML tags, and representing the HepML block in computer memory. The library is an API for external software. For example, Matrix Element Monte Carlo event generators can use the library for preparing and writing a header of a LHEF file in the form of HepML tags. In turn, Showering and Hadronization event generators can parse the HepML header and get the information in the form of C++ classes. libhepml can be used in C++, C, and Fortran programs. All necessary parts of HepML have been prepared and we present the project to the HEP community. Comment: 21 pages, 4 eps figures, elsart.cls

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    Computer Physics Communications
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      Computer Physics Communications
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    Authors: Alexandre Supply; Jacqueline Boutin; Jean-Luc Vergely; Nicolas Kolodziejczyk; +3 Authors

    Since 2010, the Soil Moisture and Ocean Salinity (SMOS) satellite mission monitors the earth emission at L-Band. It provides the longest time series of Sea Surface Salinity (SSS) from space over the global ocean. However, the SSS retrieval at high latitudes is a challenge because of the low sensitivity L-Band radiometric measurements to SSS in cold waters and to the contamination of SMOS measurements by the vicinity of continents, of sea ice and of Radio Frequency Interferences. In this paper, we assess the quality of weekly SSS fields derived from swath-ordered instantaneous SMOS SSS (so called Level 2) distributed by the European Space Agency. These products are filtered according to new criteria. We use the pseudo-dielectric constant retrieved from SMOS brightness temperatures to filter SSS pixels polluted by sea ice. We identify that the dielectric constant model and the sea surface temperature auxiliary parameter used as prior information in the SMOS SSS retrieval induce significant systematic errors at low temperatures. We propose a novel empirical correction to mitigate those sources of errors at high latitudes.Comparisons with in-situ measurements ranging from 1 to 11 m depths spotlight huge vertical stratification in fresh regions. This emphasizes the need to consider in-situ salinity as close as possible to the sea surface when validating L-band radiometric SSS which are representative of the first top centimeter.SSS Standard deviation of differences (STDD) between weekly SMOS SSS and in-situ near surface salinity significantly decrease after applying the SSS correction, from 1.46 pss to 1.28 pss. The correlation between new SMOS SSS and in-situ near surface salinity reaches 0.94. SMOS estimates better capture SSS variability in the Arctic Ocean in comparison to TOPAZ reanalysis (STDD between TOPAZ and in-situ SSS = 1.86 pss), particularly in river plumes with very large SSS spatial gradients. International audience

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    OceanRep
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    Remote Sensing of Environment
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      Remote Sensing of Environment
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    Authors: Khassoum Correa; Eric Machu; Julien Brajard; Daouda Diouf; +2 Authors

    The Sahara desert is a major global source of dust that is mostly transported southwest over the ocean off West Africa. The presence of this dust impacts the remote sensing of ocean surface properties. These aerosols have absorbing properties that are poorly accounted for in the standard ocean color data processing algorithm. This can result in an overestimation of the atmospheric contribution to the ocean color signal and consequently an underestimation of the oceanic contribution. A two-step algorithm initially applied to the Sea-viewing Wide field-of-view Sensor (SeaWiFS) data was adapted to the Moderate Resolution Imaging Spectroradiometer (MODIS-Aqua) sensor in the Northwest African region. The Northwest African region is a very productive region, where pelagic resources are an important socio-economic sector. Improving atmospheric correction of ocean color products is, thus, of particular interest for this oceanic region. The two-step approach of classifying the top-of-atmosphere radiance spectra for a better estimate of aerosol type on the one hand, and using an optimization method to fit the parameters of these aerosols and chlorophyll-a concentration (Chla) on the other hand, allows for a better representation of the optical thickness, a correction of the marine reflectance spectrum, and an increase in the spatio-temporal coverage of the area. To the extent that the properties of the water color signal are improved by this data processing, the Chla estimates should also be improved by this approach. However, it is difficult to conclude on this point from the available in situ observations. International audience WOS:001038809300001

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    Remote Sensing
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      Other literature type . Article . 2023 . Peer-reviewed
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      Article . 2023
      Data sources: DOAJ
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