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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: M. Lizotte; B. Juhls; B. Juhls; B. Juhls; +52 Authors

    Climate warming and related drivers of soil thermal change in the Arctic are expected to modify the distribution and dynamics of carbon contained in perennially frozen grounds. Thawing of permafrost in the Mackenzie Delta region of northwestern Canada, coupled with increases in river discharge and coastal erosion, trigger the release of terrestrial organic matter (OMt) from the largest Arctic drainage basin in North America into the Arctic Ocean. While this process is ongoing, well-established, and its rate is accelerating, the fate of the newly-mobilized organic matter, as it transits from the watershed through the delta and into the marine system, remains poorly understood. In the framework of the European Horizon 2020 Nunataryuk programme, and as part of the Work Package 4 (WP4) Coastal Waters theme, four field expeditions were conducted in the Mackenzie Delta region and southern Beaufort Sea from April to September 2019. The temporal sampling design allowed the survey of ambient conditions in the coastal waters under full ice cover prior to the spring freshet, during ice break-up in summer, as well as anterior to the freeze-up period in fall. To capture the fluvial-marine transition zone, and with distinct challenges related to shallow waters and changing seasonal and meteorological conditions, the field sampling was conducted in close partnership with members of the communities of Aklavik, Inuvik and Tuktoyaktuk, using several platforms: helicopters, snowmobiles and small boats. Water column profiles of physical and optical variables were measured in situ, while surface water, groundwater and sediment samples were collected and preserved for the determination of the composition and sources of OMt, including particulate and dissolved organic carbon (POC, DOC), and chromophoric dissolved organic matter (CDOM), as well as a suite of physical, chemical and biological variables. Here we present an overview of the standardized datasets, including hydrographic profiles, remote sensing reflectance, temperature and salinity, particle absorption, nutrients, dissolved organic carbon, particulate organic carbon, particulate organic nitrogen, colored dissolved organic matter absorption, fluorescent dissolved organic matter intensity, suspended particulate matter, total particulate carbon, total particulate nitrogen, stable water isotopes, radon in water, bacterial abundance, and a string of phytoplankton pigments including total chlorophyll. Datasets and related metadata can be found in Juhls et al. 2021. https://doi.pangaea.de/10.1594/PANGAEA.937587.

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    https://doi.org/10.5194/essd-2...
    Preprint . 2022 . Peer-reviewed
    License: CC BY
    Data sources: Crossref
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    Earth System Science Data
    Article . 2023
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    Earth System Science Data (ESSD)
    Other literature type . 2022
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    ZENODO; Earth System Science Data (ESSD)
    Article . 2023 . Peer-reviewed
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    Earth System Science Data
    Article . 2023
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      https://doi.org/10.5194/essd-2...
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      ZENODO; Earth System Science Data (ESSD)
      Article . 2023 . Peer-reviewed
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      Earth System Science Data
      Article . 2023
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    Authors: Cózar, Andrés; Martí, Elisa; Duarte, Carlos M; García-de-Lomas, Juan; +10 Authors

    Tara Oceans particularly acknowledges the commitment of the following sponsors: the CNRS (in particular Groupement de Recherche GDR3280), the European Molecular Biology Laboratory, Genoscope/CEA, French Government “Investissements d’Avenir” programs OCEANOMICS (ANR-11-BTBR-0008) and FRANCE GENOMIQUE (ANR-10-INBS-09-08), Agence Nationale de la Recherche, and European Union FP7 (Micro B3 no. 287589). We appreciate the support and commitment of agnès b. and E. Bourgois, Veolia Environment Foundation, Region Bretagne, Lorient Agglomeration, World Courier, Illumina, Eléctricité de France Foundation, Fondation pour la recherche sur la biodiversité, Prince Albert II de Monaco Foundation, Tara Foundation, its schooner, and its teams. We are also grateful to the French Ministry of Foreign Affairs for supporting the expedition and to the countries that granted sampling permissions. Tara Oceans would not exist without continuous support from 23 institutes (http://oceans.taraexpeditions.org/en/m/science/les-labos-impliques/). This article is contribution number 52 of Tara Oceans. This study is funded by Tara Oceans and the Malaspina 2010 Expedition project (Spanish Ministry of Economy and Competitiveness, CSD2008-00077) and has received additional support from the King Abdullah University of Science and Technology through baseline funding to X.I. and C.M.D., Campus de Excelencia Internacional del Mar (CEIMAR), and PLASTREND (BBVA Foundation) and MIDaS (CTM2016-77106-R, AEI/FEDER/UE) projects. The subtropical ocean gyres are recognized as great marine accummulation zones of floating plastic debris; however, the possibility of plastic accumulation at polar latitudes has been overlooked because of the lack of nearby pollution sources. In the present study, the Arctic Ocean was extensively sampled for floating plastic debris from the Tara Oceans circumpolar expedition. Although plastic debris was scarce or absent in most of the Arctic waters, it reached high concentrations (hundreds of thousands of pieces per square kilometer) in the northernmost and easternmost areas of the Greenland and Barents seas. The fragmentation and typology of the plastic suggested an abundant presence of aged debris that originated from distant sources. This hypothesis was corroborated by the relatively high ratios of marine surface plastic to local pollution sources. Surface circulation models and field data showed that the poleward branch of the Thermohaline Circulation transfers floating debris from the North Atlantic to the Greenland and Barents seas, which would be a dead end for this plastic conveyor belt. Given the limited surface transport of the plastic that accumulated here and the mechanisms acting for the downward transport, the seafloor beneath this Arctic sector is hypothesized as an important sink of plastic debris. Peer reviewed

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    Science Advances
    Article . 2017
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    Science Advances
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    Authors: Khassoum Correa; Eric Machu; Julien Brajard; Daouda Diouf; +2 Authors

    The Sahara desert is a major global source of dust that is mostly transported southwest over the ocean off West Africa. The presence of this dust impacts the remote sensing of ocean surface properties. These aerosols have absorbing properties that are poorly accounted for in the standard ocean color data processing algorithm. This can result in an overestimation of the atmospheric contribution to the ocean color signal and consequently an underestimation of the oceanic contribution. A two-step algorithm initially applied to the Sea-viewing Wide field-of-view Sensor (SeaWiFS) data was adapted to the Moderate Resolution Imaging Spectroradiometer (MODIS-Aqua) sensor in the Northwest African region. The Northwest African region is a very productive region, where pelagic resources are an important socio-economic sector. Improving atmospheric correction of ocean color products is, thus, of particular interest for this oceanic region. The two-step approach of classifying the top-of-atmosphere radiance spectra for a better estimate of aerosol type on the one hand, and using an optimization method to fit the parameters of these aerosols and chlorophyll-a concentration (Chla) on the other hand, allows for a better representation of the optical thickness, a correction of the marine reflectance spectrum, and an increase in the spatio-temporal coverage of the area. To the extent that the properties of the water color signal are improved by this data processing, the Chla estimates should also be improved by this approach. However, it is difficult to conclude on this point from the available in situ observations. International audience WOS:001038809300001

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    Other literature type . Article . 2023 . Peer-reviewed
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    Article . 2023
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      Other literature type . Article . 2023 . Peer-reviewed
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    Authors: Marine David; Vincent Bailly-Comte; Dominique Munaron; Annie Fiandrino; +1 Authors

    Near-shore and direct groundwater inputs are frequently omitted from nutrient budgets of coastal lagoons. This study investigated groundwater-driven dissolved inorganic nitrogen (DIN) inputs from an alluvial aquifer to the hypertrophic Or lagoon, with a focus on the Salaison River. Piezometric contours revealed that the Salaison hydrogeological catchment is 42% bigger than the surface watershed and hydraulic gradients suggest significant groundwater discharge all along the stream. Hydrograph separation of the water flow at a gauging station located 3 km upstream from the Or lagoon combined with DIN historical data enabled to estimate that groundwater-driven DIN inputs account for 81–87% of the annual total DIN inputs to the stream upstream from the gauging station. A radon mass balance was performed for the hydrological cycle 2017–2018 to estimate groundwater inflow into the downstream part of the stream. Results showed that (1) DIN fluxes increased by a factor 1.1 to 2.3 between the gauging station and the Salaison outlet, (2) the increase in DIN was due to two groundwater-fed canals and to groundwater discharge along the stream, the latter represented 63–78% of the water flow. This study thus highlights the significance of groundwater driven DIN inputs into the Salaison River, which account for 90% of the annual DIN inputs. This is particularly true in the downstream part of the river, which, on averages, supplies 48% of total DIN inputs to the river. These downstream DIN inputs into the Or lagoon were previously not taken into account in the management of this and other Mediterranean lagoons. The inputs will probably affect restoration processes for many years due to their residence time in the aquifer. This study throws light on a rarely documented source of ‘very-nearshore’ groundwater discharge to coastal streams in water and nutrient budgets of coastal zone ecosystems. International audience

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    The Science of The Total Environment
    Article . 2019 . Peer-reviewed
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      The Science of The Total Environment
      Article . 2019 . Peer-reviewed
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    Authors: Raphaelle Laureau; Sophie Loeillet; Francisco Salinas; Anders Bergström; +3 Authors

    In somatic cells, recombination between the homologous chromosomes followed by equa-tional segregation leads to loss of heterozygosity events (LOH), allowing the expression of recessive alleles and the production of novel allele combinations that are potentially beneficial upon Darwinian selection. However, inter-homolog recombination in somatic cells is rare, thus reducing potential genetic variation. Here, we explored the property of S. cerevi-siae to enter the meiotic developmental program, induce meiotic Spo11-dependent double-strand breaks genome-wide and return to mitotic growth, a process known as Return To Growth (RTG). Whole genome sequencing of 36 RTG strains derived from the hybrid S288c/SK1 diploid strain demonstrates that the RTGs are bona fide diploids with mosaic recombined genome, derived from either parental origin. Individual RTG genome-wide genotypes are comprised of 5 to 87 homozygous regions due to the loss of heterozygous (LOH) events of various lengths, varying between a few nucleotides up to several hundred kilobases. Furthermore, we show that reiteration of the RTG process shows incremental increases of homozygosity. Phenotype/genotype analysis of the RTG strains for the auxo-trophic and arsenate resistance traits validates the potential of this procedure of genome diversification to rapidly map complex traits loci (QTLs) in diploid strains without undergoing sexual reproduction. International audience

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    DOAJ
    Article . 2016
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    PLoS Genetics
    Article . 2016 . Peer-reviewed
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    PLoS Genetics
    Article . 2016
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    PLoS Genetics
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      PLoS Genetics
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    Authors: Junwen Wu; Christophe Rabouille; Sabine Charmasson; Jean Louis Reyss; +1 Authors

    7Be and 234Thex activities were determined in sediment cores off the Rhône River mouth (Gulf of Lions), in order to trace the initial transport and deposition of riverine suspended particulate matter (SPM) and evaluate the impact of flood events through 7 cruises carried out between 2007 and 2008. Consistently high 7Be and 234Thex inventories of 2000–3000mBqcm−2 and 3000–5000mBqcm−2, respectively, were observed within a ~5km radius off the Rhône River mouth. Their spatial distributions showeda gradual decrease withincreasing distance from the Rhône River mouth, and the decrease in 7Be was more pronounced than that of 234Thex, indicating that recent riverine SPM is rapidly deposited in the area located near the river mouth. This area is also characterized by high accumulation rates determined using 137Cs or 210Pbex. Both 7Be and 234Thex inventories increased in 2008 compared to 2007, and are correlated to the cumulated SPM flux for normal and flood discharge. Moreover, the 7Be/234Thex inventory ratio appears to be a potential tracer to identify the dominant influence of recently deposited particles between terrestrial and marine waters. This ratio provides an effective tool to assess river and marine influence: Zone I at a distance inferior to 3.0km, with 7Be/234Thex inventory ratio over 0.50 (surface area near river mouth ~ 7km2) is dominated by riverine influence; in contrast, Zone III at a distance superior to 8.5km, with 7Be/234Thex inventory ratio less than 0.10 (surface area off river mouth beyond 150km2) is predominantly under a marine influence. In between, an intermediate area (Zone II at a distance between 3.0 and 8.5km, with 7Be/234Thex inventory ratios between 0.10 and 0.50) displays a mixed influence. This zoning could help in further understanding the spreading of particle-reactive contaminants and its initial sedimentary deposition in the Gulf of Lions. International audience

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    Continental Shelf Research
    Article . 2018 . Peer-reviewed
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    Hal-Diderot
    Article . 2018
    License: CC BY NC ND
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      Continental Shelf Research
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    Authors: Peureux, Charles; Ardhuin, Fabrice;

    The ocean bottom pressure records from eight stations of the Cascadia array are used to investigate the properties of short surface gravity waves with frequencies ranging from 0.2 to 5 Hz. It is found that the pressure spectrum at all sites is a well-defined function of the wind speed U10 and frequency f, with only a minor shift of a few dB from one site to another that can be attributed to variations in bottom properties. This observation can be combined with the theoretical prediction that the ocean bottom pressure spectrum is proportional to the surface gravity wave spectrum E(f) squared, times the overlap integral I(f) which is given by the directional wave spectrum at each frequency. This combination, using E(f) estimated from modeled spectra or parametric spectra, yields an overlap integral I(f) that is a function of the local wave age inline image. This function is maximum for f∕fPM = 8 and decreases by 10 dB for f∕fPM = 2 and f∕fPM = 30. This shape of I(f) can be interpreted as a maximum width of the directional wave spectrum at f∕fPM = 8, possibly equivalent to an isotropic directional spectrum, and a narrower directional distribution toward both the dominant low frequencies and the higher capillary-gravity wave frequencies. International audience

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    Journal of Geophysical Research Oceans
    Article . 2016 . Peer-reviewed
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      Journal of Geophysical Research Oceans
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    Authors: J. N. Sutton; G. F. de Souza; M. I. García-Ibáñez; M. I. García-Ibáñez; +2 Authors

    The stable isotope composition of dissolved silicon in seawater (δ30SiDSi) was examined at 10 stations along the GEOVIDE section (GEOTRACES GA-01), spanning the North Atlantic Ocean (40–60° N) and Labrador Sea. Variations in δ30SiDSi below 500 m were closely tied to the distribution of water masses. Higher δ30SiDSi values are associated with intermediate and deep water masses of northern Atlantic or Arctic Ocean origin, whilst lower δ30SiDSi values are associated with DSi-rich waters sourced ultimately from the Southern Ocean. Correspondingly, the lowest δ30SiDSi values were observed in the deep and abyssal eastern North Atlantic, where dense southern-sourced waters dominate. The extent to which the spreading of water masses influences the δ30SiDSi distribution is marked clearly by Labrador Sea Water (LSW), whose high δ30SiDSi signature is visible not only within its region of formation within the Labrador and Irminger seas, but also throughout the mid-depth western and eastern North Atlantic Ocean. Both δ30SiDSi and hydrographic parameters document the circulation of LSW into the eastern North Atlantic, where it overlies southern-sourced Lower Deep Water. The GEOVIDE δ30SiDSi distribution thus provides a clear view of the direct interaction between subpolar/polar water masses of northern and southern origin, and allow examination of the extent to which these far-field signals influence the local δ30SiDSi distribution.

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    DOAJ
    Article . 2018
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    Biogeosciences
    Article . 2018
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      Biogeosciences
      Article . 2018
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    Authors: K. Mathias Wegner; Damien Piel; Damien Piel; Maxime Bruto; +9 Authors

    Bacteria of the Vibrio genus are the most predominant infectious agents threatening marine wildlife and aquaculture. Due to the large genetic diversity of these pathogens, the molecular determinants of Vibrio virulence are only poorly understood. Furthermore, studies tend to ignore co-evolutionary interactions between different host populations and their locally encountered Vibrio communities. Here, we explore the molecular targets of such co-evolutionary interactions by analyzing the genomes of nine Vibrio strains from the Splendidus-clade showing opposite virulence patterns towards two populations of Pacific oysters introduced into European Wadden Sea. By contrasting Vibrio phylogeny to their host specific virulence patterns, we could identify two core genome genes (OG1907 and OG 3159) that determine the genotype by genotype (G × G) interactions between oyster larvae and their sympatric Vibrio communities. Both genes show positive selection between locations targeting only few amino acid positions. Deletion of each gene led to a loss of the host specific virulence patterns while complementation with OG3159 alleles from both locations could recreate the wild type phenotypes matching the origin of the allele. This indicates that both genes can act as a genetic switch for Vibrio-oyster coevolution demonstrating that local adaptation in distinct Vibrio lineages can rely on only few genes independent of larger pathogenicity islands or plasmids. International audience

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    Article . 2019
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    Frontiers in Microbiology
    Article . 2019 . Peer-reviewed
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      Frontiers in Microbiology
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    Authors: Didier Aurelle; Séverine Thomas; Cécile Albert; Marc Bally; +19 Authors

    Potential for, and limits to, adaptation to environmental changes are critical for resilience and risk mitigation. The Mediterranean basin is a mosaic of biodiversity-rich ecosystems long affected by human influence, whose resilience is now questioned by climate change. After reviewing the different components of biological adaptation, we present the main characteristics of marine and terrestrial biodiversity in the Mediterranean basin and of the pressures they face. Taking climatic trends into consideration, we discuss the adaptive potential of a range of ecosystems dominated by species without active dispersal. We argue that the high heterogeneity of Mediterranean landscapes and seascapes constitutes a laboratory for the study of adaptation when environmental conditions change rapidly and may provide opportunities for adaptation and adaptability of species and ecosystems. Adaptive management in the Mediterranean can and should harness the nature-based solutions offered by both ecological and evolutionary processes for increasing the resilience of ecosystems to climate change International audience

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    Ecosphere
    Article . 2022
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      Ecosphere
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    Authors: M. Lizotte; B. Juhls; B. Juhls; B. Juhls; +52 Authors

    Climate warming and related drivers of soil thermal change in the Arctic are expected to modify the distribution and dynamics of carbon contained in perennially frozen grounds. Thawing of permafrost in the Mackenzie Delta region of northwestern Canada, coupled with increases in river discharge and coastal erosion, trigger the release of terrestrial organic matter (OMt) from the largest Arctic drainage basin in North America into the Arctic Ocean. While this process is ongoing, well-established, and its rate is accelerating, the fate of the newly-mobilized organic matter, as it transits from the watershed through the delta and into the marine system, remains poorly understood. In the framework of the European Horizon 2020 Nunataryuk programme, and as part of the Work Package 4 (WP4) Coastal Waters theme, four field expeditions were conducted in the Mackenzie Delta region and southern Beaufort Sea from April to September 2019. The temporal sampling design allowed the survey of ambient conditions in the coastal waters under full ice cover prior to the spring freshet, during ice break-up in summer, as well as anterior to the freeze-up period in fall. To capture the fluvial-marine transition zone, and with distinct challenges related to shallow waters and changing seasonal and meteorological conditions, the field sampling was conducted in close partnership with members of the communities of Aklavik, Inuvik and Tuktoyaktuk, using several platforms: helicopters, snowmobiles and small boats. Water column profiles of physical and optical variables were measured in situ, while surface water, groundwater and sediment samples were collected and preserved for the determination of the composition and sources of OMt, including particulate and dissolved organic carbon (POC, DOC), and chromophoric dissolved organic matter (CDOM), as well as a suite of physical, chemical and biological variables. Here we present an overview of the standardized datasets, including hydrographic profiles, remote sensing reflectance, temperature and salinity, particle absorption, nutrients, dissolved organic carbon, particulate organic carbon, particulate organic nitrogen, colored dissolved organic matter absorption, fluorescent dissolved organic matter intensity, suspended particulate matter, total particulate carbon, total particulate nitrogen, stable water isotopes, radon in water, bacterial abundance, and a string of phytoplankton pigments including total chlorophyll. Datasets and related metadata can be found in Juhls et al. 2021. https://doi.pangaea.de/10.1594/PANGAEA.937587.

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    https://doi.org/10.5194/essd-2...
    Preprint . 2022 . Peer-reviewed
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    Earth System Science Data
    Article . 2023
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    ZENODO; Earth System Science Data (ESSD)
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      https://doi.org/10.5194/essd-2...
      Preprint . 2022 . Peer-reviewed
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      ZENODO; Earth System Science Data (ESSD)
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    Authors: Cózar, Andrés; Martí, Elisa; Duarte, Carlos M; García-de-Lomas, Juan; +10 Authors

    Tara Oceans particularly acknowledges the commitment of the following sponsors: the CNRS (in particular Groupement de Recherche GDR3280), the European Molecular Biology Laboratory, Genoscope/CEA, French Government “Investissements d’Avenir” programs OCEANOMICS (ANR-11-BTBR-0008) and FRANCE GENOMIQUE (ANR-10-INBS-09-08), Agence Nationale de la Recherche, and European Union FP7 (Micro B3 no. 287589). We appreciate the support and commitment of agnès b. and E. Bourgois, Veolia Environment Foundation, Region Bretagne, Lorient Agglomeration, World Courier, Illumina, Eléctricité de France Foundation, Fondation pour la recherche sur la biodiversité, Prince Albert II de Monaco Foundation, Tara Foundation, its schooner, and its teams. We are also grateful to the French Ministry of Foreign Affairs for supporting the expedition and to the countries that granted sampling permissions. Tara Oceans would not exist without continuous support from 23 institutes (http://oceans.taraexpeditions.org/en/m/science/les-labos-impliques/). This article is contribution number 52 of Tara Oceans. This study is funded by Tara Oceans and the Malaspina 2010 Expedition project (Spanish Ministry of Economy and Competitiveness, CSD2008-00077) and has received additional support from the King Abdullah University of Science and Technology through baseline funding to X.I. and C.M.D., Campus de Excelencia Internacional del Mar (CEIMAR), and PLASTREND (BBVA Foundation) and MIDaS (CTM2016-77106-R, AEI/FEDER/UE) projects. The subtropical ocean gyres are recognized as great marine accummulation zones of floating plastic debris; however, the possibility of plastic accumulation at polar latitudes has been overlooked because of the lack of nearby pollution sources. In the present study, the Arctic Ocean was extensively sampled for floating plastic debris from the Tara Oceans circumpolar expedition. Although plastic debris was scarce or absent in most of the Arctic waters, it reached high concentrations (hundreds of thousands of pieces per square kilometer) in the northernmost and easternmost areas of the Greenland and Barents seas. The fragmentation and typology of the plastic suggested an abundant presence of aged debris that originated from distant sources. This hypothesis was corroborated by the relatively high ratios of marine surface plastic to local pollution sources. Surface circulation models and field data showed that the poleward branch of the Thermohaline Circulation transfers floating debris from the North Atlantic to the Greenland and Barents seas, which would be a dead end for this plastic conveyor belt. Given the limited surface transport of the plastic that accumulated here and the mechanisms acting for the downward transport, the seafloor beneath this Arctic sector is hypothesized as an important sink of plastic debris. Peer reviewed

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    Authors: Khassoum Correa; Eric Machu; Julien Brajard; Daouda Diouf; +2 Authors

    The Sahara desert is a major global source of dust that is mostly transported southwest over the ocean off West Africa. The presence of this dust impacts the remote sensing of ocean surface properties. These aerosols have absorbing properties that are poorly accounted for in the standard ocean color data processing algorithm. This can result in an overestimation of the atmospheric contribution to the ocean color signal and consequently an underestimation of the oceanic contribution. A two-step algorithm initially applied to the Sea-viewing Wide field-of-view Sensor (SeaWiFS) data was adapted to the Moderate Resolution Imaging Spectroradiometer (MODIS-Aqua) sensor in the Northwest African region. The Northwest African region is a very productive region, where pelagic resources are an important socio-economic sector. Improving atmospheric correction of ocean color products is, thus, of particular interest for this oceanic region. The two-step approach of classifying the top-of-atmosphere radiance spectra for a better estimate of aerosol type on the one hand, and using an optimization method to fit the parameters of these aerosols and chlorophyll-a concentration (Chla) on the other hand, allows for a better representation of the optical thickness, a correction of the marine reflectance spectrum, and an increase in the spatio-temporal coverage of the area. To the extent that the properties of the water color signal are improved by this data processing, the Chla estimates should also be improved by this approach. However, it is difficult to conclude on this point from the available in situ observations. International audience WOS:001038809300001

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    Authors: Marine David; Vincent Bailly-Comte; Dominique Munaron; Annie Fiandrino; +1 Authors

    Near-shore and direct groundwater inputs are frequently omitted from nutrient budgets of coastal lagoons. This study investigated groundwater-driven dissolved inorganic nitrogen (DIN) inputs from an alluvial aquifer to the hypertrophic Or lagoon, with a focus on the Salaison River. Piezometric contours revealed that the Salaison hydrogeological catchment is 42% bigger than the surface watershed and hydraulic gradients suggest significant groundwater discharge all along the stream. Hydrograph separation of the water flow at a gauging station located 3 km upstream from the Or lagoon combined with DIN historical data enabled to estimate that groundwater-driven DIN inputs account for 81–87% of the annual total DIN inputs to the stream upstream from the gauging station. A radon mass balance was performed for the hydrological cycle 2017–2018 to estimate groundwater inflow into the downstream part of the stream. Results showed that (1) DIN fluxes increased by a factor 1.1 to 2.3 between the gauging station and the Salaison outlet, (2) the increase in DIN was due to two groundwater-fed canals and to groundwater discharge along the stream, the latter represented 63–78% of the water flow. This study thus highlights the significance of groundwater driven DIN inputs into the Salaison River, which account for 90% of the annual DIN inputs. This is particularly true in the downstream part of the river, which, on averages, supplies 48% of total DIN inputs to the river. These downstream DIN inputs into the Or lagoon were previously not taken into account in the management of this and other Mediterranean lagoons. The inputs will probably affect restoration processes for many years due to their residence time in the aquifer. This study throws light on a rarely documented source of ‘very-nearshore’ groundwater discharge to coastal streams in water and nutrient budgets of coastal zone ecosystems. International audience

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    The Science of The Total Environment
    Article . 2019 . Peer-reviewed
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    Authors: Raphaelle Laureau; Sophie Loeillet; Francisco Salinas; Anders Bergström; +3 Authors

    In somatic cells, recombination between the homologous chromosomes followed by equa-tional segregation leads to loss of heterozygosity events (LOH), allowing the expression of recessive alleles and the production of novel allele combinations that are potentially beneficial upon Darwinian selection. However, inter-homolog recombination in somatic cells is rare, thus reducing potential genetic variation. Here, we explored the property of S. cerevi-siae to enter the meiotic developmental program, induce meiotic Spo11-dependent double-strand breaks genome-wide and return to mitotic growth, a process known as Return To Growth (RTG). Whole genome sequencing of 36 RTG strains derived from the hybrid S288c/SK1 diploid strain demonstrates that the RTGs are bona fide diploids with mosaic recombined genome, derived from either parental origin. Individual RTG genome-wide genotypes are comprised of 5 to 87 homozygous regions due to the loss of heterozygous (LOH) events of various lengths, varying between a few nucleotides up to several hundred kilobases. Furthermore, we show that reiteration of the RTG process shows incremental increases of homozygosity. Phenotype/genotype analysis of the RTG strains for the auxo-trophic and arsenate resistance traits validates the potential of this procedure of genome diversification to rapidly map complex traits loci (QTLs) in diploid strains without undergoing sexual reproduction. International audience

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    PLoS Genetics
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    Authors: Junwen Wu; Christophe Rabouille; Sabine Charmasson; Jean Louis Reyss; +1 Authors

    7Be and 234Thex activities were determined in sediment cores off the Rhône River mouth (Gulf of Lions), in order to trace the initial transport and deposition of riverine suspended particulate matter (SPM) and evaluate the impact of flood events through 7 cruises carried out between 2007 and 2008. Consistently high 7Be and 234Thex inventories of 2000–3000mBqcm−2 and 3000–5000mBqcm−2, respectively, were observed within a ~5km radius off the Rhône River mouth. Their spatial distributions showeda gradual decrease withincreasing distance from the Rhône River mouth, and the decrease in 7Be was more pronounced than that of 234Thex, indicating that recent riverine SPM is rapidly deposited in the area located near the river mouth. This area is also characterized by high accumulation rates determined using 137Cs or 210Pbex. Both 7Be and 234Thex inventories increased in 2008 compared to 2007, and are correlated to the cumulated SPM flux for normal and flood discharge. Moreover, the 7Be/234Thex inventory ratio appears to be a potential tracer to identify the dominant influence of recently deposited particles between terrestrial and marine waters. This ratio provides an effective tool to assess river and marine influence: Zone I at a distance inferior to 3.0km, with 7Be/234Thex inventory ratio over 0.50 (surface area near river mouth ~ 7km2) is dominated by riverine influence; in contrast, Zone III at a distance superior to 8.5km, with 7Be/234Thex inventory ratio less than 0.10 (surface area off river mouth beyond 150km2) is predominantly under a marine influence. In between, an intermediate area (Zone II at a distance between 3.0 and 8.5km, with 7Be/234Thex inventory ratios between 0.10 and 0.50) displays a mixed influence. This zoning could help in further understanding the spreading of particle-reactive contaminants and its initial sedimentary deposition in the Gulf of Lions. International audience

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    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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    Continental Shelf Research
    Article . 2018 . Peer-reviewed
    License: Elsevier TDM
    Data sources: Crossref
    Hal-Diderot
    Article . 2018
    License: CC BY NC ND
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      Continental Shelf Research
      Article . 2018 . Peer-reviewed
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      Hal-Diderot
      Article . 2018
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    Authors: Peureux, Charles; Ardhuin, Fabrice;

    The ocean bottom pressure records from eight stations of the Cascadia array are used to investigate the properties of short surface gravity waves with frequencies ranging from 0.2 to 5 Hz. It is found that the pressure spectrum at all sites is a well-defined function of the wind speed U10 and frequency f, with only a minor shift of a few dB from one site to another that can be attributed to variations in bottom properties. This observation can be combined with the theoretical prediction that the ocean bottom pressure spectrum is proportional to the surface gravity wave spectrum E(f) squared, times the overlap integral I(f) which is given by the directional wave spectrum at each frequency. This combination, using E(f) estimated from modeled spectra or parametric spectra, yields an overlap integral I(f) that is a function of the local wave age inline image. This function is maximum for f∕fPM = 8 and decreases by 10 dB for f∕fPM = 2 and f∕fPM = 30. This shape of I(f) can be interpreted as a maximum width of the directional wave spectrum at f∕fPM = 8, possibly equivalent to an isotropic directional spectrum, and a narrower directional distribution toward both the dominant low frequencies and the higher capillary-gravity wave frequencies. International audience

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    Journal of Geophysical Research Oceans
    Article . 2016 . Peer-reviewed
    License: Wiley Online Library User Agreement
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      Journal of Geophysical Research Oceans
      Article . 2016 . Peer-reviewed
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    Authors: J. N. Sutton; G. F. de Souza; M. I. García-Ibáñez; M. I. García-Ibáñez; +2 Authors

    The stable isotope composition of dissolved silicon in seawater (δ30SiDSi) was examined at 10 stations along the GEOVIDE section (GEOTRACES GA-01), spanning the North Atlantic Ocean (40–60° N) and Labrador Sea. Variations in δ30SiDSi below 500 m were closely tied to the distribution of water masses. Higher δ30SiDSi values are associated with intermediate and deep water masses of northern Atlantic or Arctic Ocean origin, whilst lower δ30SiDSi values are associated with DSi-rich waters sourced ultimately from the Southern Ocean. Correspondingly, the lowest δ30SiDSi values were observed in the deep and abyssal eastern North Atlantic, where dense southern-sourced waters dominate. The extent to which the spreading of water masses influences the δ30SiDSi distribution is marked clearly by Labrador Sea Water (LSW), whose high δ30SiDSi signature is visible not only within its region of formation within the Labrador and Irminger seas, but also throughout the mid-depth western and eastern North Atlantic Ocean. Both δ30SiDSi and hydrographic parameters document the circulation of LSW into the eastern North Atlantic, where it overlies southern-sourced Lower Deep Water. The GEOVIDE δ30SiDSi distribution thus provides a clear view of the direct interaction between subpolar/polar water masses of northern and southern origin, and allow examination of the extent to which these far-field signals influence the local δ30SiDSi distribution.

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    Article . 2018
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    Biogeosciences
    Article . 2018
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      Biogeosciences
      Article . 2018
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    Authors: K. Mathias Wegner; Damien Piel; Damien Piel; Maxime Bruto; +9 Authors

    Bacteria of the Vibrio genus are the most predominant infectious agents threatening marine wildlife and aquaculture. Due to the large genetic diversity of these pathogens, the molecular determinants of Vibrio virulence are only poorly understood. Furthermore, studies tend to ignore co-evolutionary interactions between different host populations and their locally encountered Vibrio communities. Here, we explore the molecular targets of such co-evolutionary interactions by analyzing the genomes of nine Vibrio strains from the Splendidus-clade showing opposite virulence patterns towards two populations of Pacific oysters introduced into European Wadden Sea. By contrasting Vibrio phylogeny to their host specific virulence patterns, we could identify two core genome genes (OG1907 and OG 3159) that determine the genotype by genotype (G × G) interactions between oyster larvae and their sympatric Vibrio communities. Both genes show positive selection between locations targeting only few amino acid positions. Deletion of each gene led to a loss of the host specific virulence patterns while complementation with OG3159 alleles from both locations could recreate the wild type phenotypes matching the origin of the allele. This indicates that both genes can act as a genetic switch for Vibrio-oyster coevolution demonstrating that local adaptation in distinct Vibrio lineages can rely on only few genes independent of larger pathogenicity islands or plasmids. International audience

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    Article . 2019
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    Article . 2019
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    Frontiers in Microbiology
    Article . 2019 . Peer-reviewed
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    Frontiers in Microbiology
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      Frontiers in Microbiology
      Article . 2019 . Peer-reviewed
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      Frontiers in Microbiology
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    Authors: Didier Aurelle; Séverine Thomas; Cécile Albert; Marc Bally; +19 Authors

    Potential for, and limits to, adaptation to environmental changes are critical for resilience and risk mitigation. The Mediterranean basin is a mosaic of biodiversity-rich ecosystems long affected by human influence, whose resilience is now questioned by climate change. After reviewing the different components of biological adaptation, we present the main characteristics of marine and terrestrial biodiversity in the Mediterranean basin and of the pressures they face. Taking climatic trends into consideration, we discuss the adaptive potential of a range of ecosystems dominated by species without active dispersal. We argue that the high heterogeneity of Mediterranean landscapes and seascapes constitutes a laboratory for the study of adaptation when environmental conditions change rapidly and may provide opportunities for adaptation and adaptability of species and ecosystems. Adaptive management in the Mediterranean can and should harness the nature-based solutions offered by both ecological and evolutionary processes for increasing the resilience of ecosystems to climate change International audience

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    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Ecosphere
    Article . 2022
    Data sources: DOAJ
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ArchiMer - Instituti...arrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      Ecosphere
      Article . 2022
      Data sources: DOAJ
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/