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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Kleyheeg, Erik; van Leeuwen, C.H.A.; Nolet, B.A.; Soons, Merel; +2 Authors

    Plant populations in fragmented ecosystems rely largely on internal dispersal by animals. To unravel the mechanisms underlying this mode of dispersal, an increasing number of experimental feeding studies is carried out. However, while physical activity is known to affect vertebrate digestive processes, almost all current knowledge on mechanisms of internal seed dispersal has been obtained from experiments with resting animals. We investigated how physical activity of the mallard Anas platyrhynchos, probably the quantitatively most important biotic dispersal agent in aquatic habitats in the entire Northern Hemisphere, affects gut passage survival and retention time of ingested plant seeds. We fed seeds of nine common wetland plants to mallards trained to subsequently swim for six hours in a flume tank at different swimming speeds (activity levels). We compared gut passage survival and retention times of seeds against a control treatment with mallards resting in a conventional dry cage. Intact gut passage of seeds increased significantly with mallard activity (up to 80% in the fastest swimming treatment compared to the control), identifying reduced digestive efficiency due to increased metabolic rates as a mechanism enhancing the dispersal potential of ingested seeds. Gut passage speed was modestly accelerated (13% on average) by increased mallard activity, an effect partly obscured by the interaction between seed retention time and probability of digestion. Gut passage acceleration will be more pronounced in digestion‐resilient seed species, thereby modulating their dispersal distances. Our findings imply that seed dispersal potential by mallards calculated from previous experiments with resting birds is highly underestimated, while dispersal distances may be overestimated for some plant species. Similar effects of physical activity on digestive efficiency of mammals suggests that endozoochorous dispersal of plant seeds by vertebrates is more effective and plays a quantitatively more important ecological role in both terrestrial and aquatic ecosystems than previously thought.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ NARCIS; Oikosarrow_drop_down
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    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Oikos
    Article . 2015
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    Oikos
    Article . 2014
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    Oikos
    Article . 2014 . Peer-reviewed
    License: CC BY NC ND
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    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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    Article . 2014
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ NARCIS; Oikosarrow_drop_down
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      Oikos
      Article . 2015
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      Oikos
      Article . 2014
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      Oikos
      Article . 2014 . Peer-reviewed
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      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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      Article . 2014
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    Authors: F.L. Schaafsma; Carmen David; Evgeny A. Pakhomov; Brian P. V. Hunt; +3 Authors

    The condition and survival of Antarctic krill (Euphausia superba) strongly depends on sea ice conditions during winter. How krill utilize sea ice depends on several factors such as region and developmental stage. A comprehensive understanding of sea ice habitat use by krill, however, remains largely unknown. The aim of this study was to improve the understanding of the krill’s interaction with the sea ice habitat during winter/early spring by conducting large-scale sampling of the ice–water interface (0–2 m) and comparing the size and developmental stage composition of krill with the pelagic population (0–500 m). Results show that the population in the northern Weddell Sea consisted mainly of krill that were <1 year old (age class 0; AC0), and that it was comprised of multiple cohorts. Size per developmental stage differed spatially, indicating that the krill likely were advected from various origins. The size distribution of krill differed between the two depth strata sampled. Larval stages with a relatively small size (mean 7–8 mm) dominated the upper two metre layer of the water column, while larger larvae and AC0 juveniles (mean 14–15 mm) were proportionally more abundant in the 0- to 500-m stratum. Our results show that, as krill mature, their vertical distribution and utilization of the sea ice appear to change gradually. This could be the result of changes in physiology and/or behaviour, as, e.g., the krill’s energy demand and swimming capacity increase with size and age. The degree of sea ice association will have an effect on large-scale spatial distribution patterns of AC0 krill and on predictions of the consequences of sea ice decline on their survival over winter.

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    NARCIS; Research@WUR
    Article . 2016
    License: CC BY
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    Research@WUR; Polar Biology
    Other literature type . Article . 2016 . Peer-reviewed
    License: CC BY
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Polar Biology
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      Article . 2016
      License: CC BY
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      Research@WUR; Polar Biology
      Other literature type . Article . 2016 . Peer-reviewed
      License: CC BY
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      Polar Biology
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Marta Rodrigo-Gámiz; Sebastiaan W Rampen; H. de Haas; Marianne Baas; +2 Authors

    Abstract. Subpolar regions are key areas for studying natural climate variability due to their high sensitivity to rapid environmental changes, particularly through sea surface temperature (SST) variations. Here, we have tested three independent organic temperature proxies (UK'37; TEX86; and the long-chain diol index, LDI) regarding their potential applicability for SST reconstruction in the subpolar region around Iceland. UK'37, TEX86 and TEXL86 temperature estimates from suspended particulate matter showed a substantial discrepancy with instrumental data, while long-chain alkyl diols were below the detection limit at most of the stations. In the northern Iceland Basin, sedimenting particles revealed a seasonality in lipid fluxes, i.e., high fluxes of alkenones and glycerol dialkyl glycerol tetraethers (GDGTs) were measured during late spring and during summer and high fluxes of long-chain alkyl diols during late summer. The flux-weighted average temperature estimates had a significant negative (ca. 2.3 °C for UK'37) and positive (up to 5 °C for TEX86) offset with satellite-derived SSTs and temperature estimates derived from the underlying surface sediment. UK'37 temperature estimates from surface sediments around Iceland correlate well with summer mean sea surface temperatures, while TEX86-derived temperatures correspond with both annual and winter mean 0–200 m temperatures, suggesting a subsurface temperature signal. Anomalous LDI-SST values in surface sediments and low mass flux of 1,13- and 1,15-diols compared to 1,14-diols suggest that Proboscia diatoms are the major sources of long-chain alkyl diols in this area rather than eustigmatophyte algae, and therefore the LDI cannot be applied in this region.

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    Biogeosciences
    Article . Preprint
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    Biogeosciences
    Article . 2015 . Peer-reviewed
    License: CC BY
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    https://doi.org/10.5194/bgd-12...
    Preprint . 2015
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      Biogeosciences
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      Biogeosciences
      Article . 2015 . Peer-reviewed
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      https://doi.org/10.5194/bgd-12...
      Preprint . 2015
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Velthuis, Mandy; De Senerpont Domis, Lisette N.; Frenken, Thijs; Stephan, Susanne; +8 Authors

    Contains fulltext : 175485.pdf (Publisher’s version ) (Open Access) 16 p.

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    NARCIS; Research@WUR
    Article . 2017
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    Radboud Repository
    Article . 2017
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      Article . 2017
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      Radboud Repository
      Article . 2017
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    Authors: H. Goelzer; H. Goelzer; H. Goelzer; S. Nowicki; +49 Authors

    Abstract. The Greenland ice sheet is one of the largest contributors to global meansea-level rise today and is expected to continue to lose mass as the Arcticcontinues to warm. The two predominant mass loss mechanisms are increasedsurface meltwater run-off and mass loss associated with the retreat ofmarine-terminating outlet glaciers. In this paper we use a large ensemble ofGreenland ice sheet models forced by output from a representative subset ofthe Coupled Model Intercomparison Project (CMIP5) global climate models to project ice sheet changes and sea-level risecontributions over the 21st century. The simulations are part of theIce Sheet Model Intercomparison Project for CMIP6 (ISMIP6). We estimate thesea-level contribution together with uncertainties due to future climateforcing, ice sheet model formulations and ocean forcing for the twogreenhouse gas concentration scenarios RCP8.5 and RCP2.6. The resultsindicate that the Greenland ice sheet will continue to lose mass in bothscenarios until 2100, with contributions of 90±50 and 32±17 mm to sea-level rise for RCP8.5 and RCP2.6, respectively. The largestmass loss is expected from the south-west of Greenland, which is governed bysurface mass balance changes, continuing what is already observed today.Because the contributions are calculated against an unforced controlexperiment, these numbers do not include any committed mass loss, i.e. massloss that would occur over the coming century if the climate forcingremained constant. Under RCP8.5 forcing, ice sheet model uncertaintyexplains an ensemble spread of 40 mm, while climate model uncertainty andocean forcing uncertainty account for a spread of 36 and 19 mm,respectively. Apart from those formally derived uncertainty ranges, thelargest gap in our knowledge is about the physical understanding andimplementation of the calving process, i.e. the interaction of the ice sheetwith the ocean. info:eu-repo/semantics/published

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    DI-fusion
    Article . 2020 . Peer-reviewed
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    St Andrews Research Repository
    Article . 2020 . Peer-reviewed
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    The Cryosphere
    Article . 2020
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    The Cryosphere (TC)
    Article . 2020
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    https://doi.org/10.5194/tc-201...
    Preprint . 2020
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    The Cryosphere; The Cryosphere (TC)
    Article . Preprint . 2020
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    DOAJ
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      DI-fusion
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      The Cryosphere
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      The Cryosphere (TC)
      Article . 2020
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      The Cryosphere; The Cryosphere (TC)
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      DOAJ
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    Authors: Ana Lokmer; M. Anouk Goedknegt; David W. Thieltges; Dario Fiorentino; +4 Authors

    Unveiling the factors and processes that shape the dynamics of host associated microbial communities (microbiota) under natural conditions is an important part of understanding and predicting an organism's response to a changing environment. The microbiota is shaped by host (i.e., genetic) factors as well as by the biotic and abiotic environment. Studying natural variation of microbial community composition in multiple host genetic backgrounds across spatial as well as temporal scales represents a means to untangle this complex interplay. Here, we combined a spatially-stratified with a longitudinal sampling scheme within differentiated host genetic backgrounds by reciprocally transplanting Pacific oysters between two sites in the Wadden Sea (Sylt and Texel). To further differentiate contingent site from host genetic effects, we repeatedly sampled the same individuals over a summer season to examine structure, diversity and dynamics of individual hemolymph microbiota following experimental removal of resident microbiota by antibiotic treatment. While a large proportion of microbiome variation could be attributed to immediate environmental conditions, we observed persistent effects of antibiotic treatment and translocation suggesting that hemolymph microbial community dynamics is subject to within-microbiome interactions and host population specific factors. In addition, the analysis of spatial variation revealed that the within-site microenvironmental heterogeneity resulted in high small-scale variability, as opposed to large-scale (between-site) stability. Similarly, considerable within-individual temporal variability was in contrast with the overall temporal stability at the site level. Overall, our longitudinal, spatially-stratified sampling design revealed that variation in hemolymph microbiota is strongly influenced by site and immediate environmental conditions, whereas internal microbiome dynamics and oyster-related factors add to their long-term stability. The combination of small and large scale resolution of spatial and temporal observations therefore represents a crucial but underused tool to study host-associated microbiome dynamics. © 2016 Lokmer, Goedknegt, Thieltges, Fiorentino, Kuenzel, Baines and Wegner.

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    NIOZ Repository
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    NARCIS
    Article . 2016
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    Frontiers in Microbiology
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      Frontiers in Microbiology
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    Authors: Munneke, Peter Kuipers; McGrath, Daniel; Medley, Brooke; Luckman, Adrian; +14 Authors

    This work is funded by the Netherland Polar Programme, Netherlands Earth System Science Centre (NESSC), NSF OPP research grant 0732946, NERC/GEF grants NE/L006707/1, NE/L005409/1, NE/E012914/1, GEF loans 863, 890, 1028. The surface mass balance (SMB) of the Larsen C ice shelf (LCIS), Antarctica, is poorly constrained due to a dearth of in situ observations. Combining several geophysical techniques, we reconstruct spatial and temporal patterns of SMB over the LCIS. Continuous time series of snow height (2.5–6 years) at five locations allow for multi-year estimates of seasonal and annual SMB over the LCIS. There is high interannual variability in SMB as well as spatial variability: in the north, SMB is 0.40 ± 0.06 to 0.41 ± 0.04 m w.e. year−1, while farther south, SMB is up to 0.50 ± 0.05 m w.e. year−1. This difference between north and south is corroborated by winter snow accumulation derived from an airborne radar survey from 2009, which showed an average snow thickness of 0.34 m w.e. north of 66° S, and 0.40 m w.e. south of 68° S. Analysis of ground-penetrating radar from several field campaigns allows for a longer-term perspective of spatial variations in SMB: a particularly strong and coherent reflection horizon below 25–44 m of water-equivalent ice and firn is observed in radargrams collected across the shelf. We propose that this horizon was formed synchronously across the ice shelf. Combining snow height observations, ground and airborne radar, and SMB output from a regional climate model yields a gridded estimate of SMB over the LCIS. It confirms that SMB increases from north to south, overprinted by a gradient of increasing SMB to the west, modulated in the west by föhn-induced sublimation. Previous observations show a strong decrease in firn air content toward the west, which we attribute to spatial patterns of melt, refreezing, and densification rather than SMB. Publisher PDF Peer reviewed

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    The Cryosphere
    Article . 2017
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    The Cryosphere; The Cryosphere (TC)
    Article . 2017 . Peer-reviewed
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    St Andrews Research Repository
    Article . 2017 . Peer-reviewed
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    The Cryosphere (TC)
    Other literature type . 2018
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    The Cryosphere (TC)
    Article . Preprint
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    https://doi.org/10.5194/tc-201...
    Preprint . 2017
    License: CC BY
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    DOAJ
    Article . 2017
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      The Cryosphere
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      The Cryosphere; The Cryosphere (TC)
      Article . 2017 . Peer-reviewed
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      St Andrews Research Repository
      Article . 2017 . Peer-reviewed
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      The Cryosphere (TC)
      Other literature type . 2018
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      The Cryosphere (TC)
      Article . Preprint
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      https://doi.org/10.5194/tc-201...
      Preprint . 2017
      License: CC BY
      Data sources: Crossref
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      DOAJ
      Article . 2017
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    Authors: Beddow, Helen M.; Liebrand, Diederik; Wilson, Douglas S.; Hilgen, Frits J.; +6 Authors

    Astronomical tuning of sediment sequences requires both unambiguous cycle pattern recognition in climate proxy records and astronomical solutions, as well as independent information about the phase relationship between these two. Here we present two different astronomically tuned age models for the Oligocene–Miocene transition (OMT) from Integrated Ocean Drilling Program Site U1334 (equatorial Pacific Ocean) to assess the effect tuning has on astronomically calibrated ages and the geologic timescale. These alternative age models (roughly from ∼ 22 to ∼ 24 Ma) are based on different tunings between proxy records and eccentricity: the first age model is based on an aligning CaCO3 weight (wt%) to Earth's orbital eccentricity, and the second age model is based on a direct age calibration of benthic foraminiferal stable carbon isotope ratios (δ13C) to eccentricity. To independently test which tuned age model and associated tuning assumptions are in best agreement with independent ages based on tectonic plate-pair spreading rates, we assign the tuned ages to magnetostratigraphic reversals identified in deep-marine magnetic anomaly profiles. Subsequently, we compute tectonic plate-pair spreading rates based on the tuned ages. The resultant alternative spreading-rate histories indicate that the CaCO3 tuned age model is most consistent with a conservative assumption of constant, or linearly changing, spreading rates. The CaCO3 tuned age model thus provides robust ages and durations for polarity chrons C6Bn.1n–C7n.1r, which are not based on astronomical tuning in the latest iteration of the geologic timescale. Furthermore, it provides independent evidence that the relatively large (several 10 000 years) time lags documented in the benthic foraminiferal isotope records relative to orbital eccentricity constitute a real feature of the Oligocene–Miocene climate system and carbon cycle. The age constraints from Site U1334 thus indicate that the delayed responses of the Oligocene–Miocene climate–cryosphere system and (marine) carbon cycle resulted from highly non-linear feedbacks to astronomical forcing.

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    Climate of the Past
    Article . 2018
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    Climate of the Past (CP)
    Article . 2018 . Peer-reviewed
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    Climate of the Past (CP)
    Article
    License: CC BY
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    Climate of the Past
    Article . 2018
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    DOAJ
    Article . 2018
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      Climate of the Past
      Article . 2018
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      Climate of the Past (CP)
      Article . 2018 . Peer-reviewed
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      Climate of the Past (CP)
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      Climate of the Past
      Article . 2018
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    Authors: Lina, Russ; Boran, Kartal; Huub J M, Op den Camp; Martina, Sollai; +5 Authors

    International audience; Hydrothermally active sediments are highly productive, chemosynthetic areas which are characterized by the rapid turnover of particulate organic matter under extreme conditions in which ammonia is liberated. These systems might be suitable habitats for anaerobic ammonium oxidizing (anammox) bacteria but this has not been investigated in detail. Here we report the diversity and abundance of anammox bacteria in sediments that seep cold hydrocarbon-rich fluids and hydrothermal vent areas of the Guaymas Basin in the Cortés Sea using the unique functional anammox marker gene, hydrazine synthase (hzsA). All clones retrieved were closely associated to the "Candidatus Scalindua" genus. Phylogenetic analysis revealed two distinct clusters of hzsA sequences (Ca. Scalindua hzsA cluster I and II). Comparison of individual sequences from both clusters showed that several of these sequences had a similarity as low as 76% on nucleotide level. Based on the analysis of this phylomarker, a very high interspecies diversity within the marine anammox group is apparent. Absolute numbers of anammox bacteria in the sediments samples were determined by amplification of a 257 bp fragment of the hszA gene in a qPCR assay. The results indicate that numbers of anammox bacteria are generally higher in cold hydrocarbon-rich sediments compared to the vent areas and the reference zone. Ladderanes, lipids unique to anammox bacteria were also detected in several of the sediment samples corroborating the hzsA analysis. Due to the high concentrations of reduced sulfur compounds and its potential impact on the cycling of nitrogen we aimed to get an indication about the key players in the oxidation of sulfide in the Guaymas Basin sediments using the alpha subunit of the adenosine-5'-phosphosulfate (APS) reductase (aprA). Amplification of the aprA gene revealed a high number of gammaproteobacterial aprA genes covering the two sulfur-oxidizing bacteria aprA lineages as well as sulfate-reducers.

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    Radboud Repository
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    Frontiers in Microbiology
    Article . 2013
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      Frontiers in Microbiology
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      Frontiers in Microbiology
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      Article . 2013
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    Authors: Martin Rückamp; Heiko Goelzer; Angelika Humbert;

    Projections of the contribution of the Greenland ice sheet to future sea-level rise include uncertainties primarily due to the imposed climate forcing and the initial state of the ice sheet model. Several state-of-the-art ice flow models are currently being employed on various grid resolutions to estimate future mass changes in the framework of the Ice Sheet Model Intercomparison Project for CMIP6 (ISMIP6). Here we investigate the sensitivity to grid resolution on centennial sea-level contributions from the Greenland ice sheet and study the mechanism at play. To this end, we employ the finite-element higher-order ice flow model ISSM and conduct experiments with four different horizontal resolutions, namely 4, 2, 1 and 0.75 km. We run the simulation based on the ISMIP6 core GCM MIROC5 under the high emission scenario RCP8.5 and consider both atmospheric and oceanic forcing in full and separate scenarios. Under the full scenarios, finer simulations unveil up to ~5 % more sea-level rise compared to the coarser resolution. The sensitivity depends on the magnitude of outlet glacier retreat, which is implemented as a series of retreat masks following the ISMIP6 protocol. Without imposed retreat under atmosphere-only forcing, the resolution dependency exhibits an opposite behaviour with about ~ 5 % more sea-level contribution in the coarser resolution. The sea-level contribution indicates a converging behaviour

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    https://doi.org/10.5194/tc-201...
    Preprint . 2020
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    The Cryosphere (TC)
    Other literature type . 2020
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      https://doi.org/10.5194/tc-201...
      Preprint . 2020
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      The Cryosphere (TC)
      Other literature type . 2020
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    Authors: Kleyheeg, Erik; van Leeuwen, C.H.A.; Nolet, B.A.; Soons, Merel; +2 Authors

    Plant populations in fragmented ecosystems rely largely on internal dispersal by animals. To unravel the mechanisms underlying this mode of dispersal, an increasing number of experimental feeding studies is carried out. However, while physical activity is known to affect vertebrate digestive processes, almost all current knowledge on mechanisms of internal seed dispersal has been obtained from experiments with resting animals. We investigated how physical activity of the mallard Anas platyrhynchos, probably the quantitatively most important biotic dispersal agent in aquatic habitats in the entire Northern Hemisphere, affects gut passage survival and retention time of ingested plant seeds. We fed seeds of nine common wetland plants to mallards trained to subsequently swim for six hours in a flume tank at different swimming speeds (activity levels). We compared gut passage survival and retention times of seeds against a control treatment with mallards resting in a conventional dry cage. Intact gut passage of seeds increased significantly with mallard activity (up to 80% in the fastest swimming treatment compared to the control), identifying reduced digestive efficiency due to increased metabolic rates as a mechanism enhancing the dispersal potential of ingested seeds. Gut passage speed was modestly accelerated (13% on average) by increased mallard activity, an effect partly obscured by the interaction between seed retention time and probability of digestion. Gut passage acceleration will be more pronounced in digestion‐resilient seed species, thereby modulating their dispersal distances. Our findings imply that seed dispersal potential by mallards calculated from previous experiments with resting birds is highly underestimated, while dispersal distances may be overestimated for some plant species. Similar effects of physical activity on digestive efficiency of mammals suggests that endozoochorous dispersal of plant seeds by vertebrates is more effective and plays a quantitatively more important ecological role in both terrestrial and aquatic ecosystems than previously thought.

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    Oikos
    Article . 2015
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    Oikos
    Article . 2014
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    Oikos
    Article . 2014 . Peer-reviewed
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    Article . 2014
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      Article . 2015
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      Oikos
      Article . 2014
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      Oikos
      Article . 2014 . Peer-reviewed
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      Article . 2014
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    Authors: F.L. Schaafsma; Carmen David; Evgeny A. Pakhomov; Brian P. V. Hunt; +3 Authors

    The condition and survival of Antarctic krill (Euphausia superba) strongly depends on sea ice conditions during winter. How krill utilize sea ice depends on several factors such as region and developmental stage. A comprehensive understanding of sea ice habitat use by krill, however, remains largely unknown. The aim of this study was to improve the understanding of the krill’s interaction with the sea ice habitat during winter/early spring by conducting large-scale sampling of the ice–water interface (0–2 m) and comparing the size and developmental stage composition of krill with the pelagic population (0–500 m). Results show that the population in the northern Weddell Sea consisted mainly of krill that were <1 year old (age class 0; AC0), and that it was comprised of multiple cohorts. Size per developmental stage differed spatially, indicating that the krill likely were advected from various origins. The size distribution of krill differed between the two depth strata sampled. Larval stages with a relatively small size (mean 7–8 mm) dominated the upper two metre layer of the water column, while larger larvae and AC0 juveniles (mean 14–15 mm) were proportionally more abundant in the 0- to 500-m stratum. Our results show that, as krill mature, their vertical distribution and utilization of the sea ice appear to change gradually. This could be the result of changes in physiology and/or behaviour, as, e.g., the krill’s energy demand and swimming capacity increase with size and age. The degree of sea ice association will have an effect on large-scale spatial distribution patterns of AC0 krill and on predictions of the consequences of sea ice decline on their survival over winter.

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    Article . 2016
    License: CC BY
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    Research@WUR; Polar Biology
    Other literature type . Article . 2016 . Peer-reviewed
    License: CC BY
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    Polar Biology
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      Article . 2016
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      Research@WUR; Polar Biology
      Other literature type . Article . 2016 . Peer-reviewed
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    Authors: Marta Rodrigo-Gámiz; Sebastiaan W Rampen; H. de Haas; Marianne Baas; +2 Authors

    Abstract. Subpolar regions are key areas for studying natural climate variability due to their high sensitivity to rapid environmental changes, particularly through sea surface temperature (SST) variations. Here, we have tested three independent organic temperature proxies (UK'37; TEX86; and the long-chain diol index, LDI) regarding their potential applicability for SST reconstruction in the subpolar region around Iceland. UK'37, TEX86 and TEXL86 temperature estimates from suspended particulate matter showed a substantial discrepancy with instrumental data, while long-chain alkyl diols were below the detection limit at most of the stations. In the northern Iceland Basin, sedimenting particles revealed a seasonality in lipid fluxes, i.e., high fluxes of alkenones and glycerol dialkyl glycerol tetraethers (GDGTs) were measured during late spring and during summer and high fluxes of long-chain alkyl diols during late summer. The flux-weighted average temperature estimates had a significant negative (ca. 2.3 °C for UK'37) and positive (up to 5 °C for TEX86) offset with satellite-derived SSTs and temperature estimates derived from the underlying surface sediment. UK'37 temperature estimates from surface sediments around Iceland correlate well with summer mean sea surface temperatures, while TEX86-derived temperatures correspond with both annual and winter mean 0–200 m temperatures, suggesting a subsurface temperature signal. Anomalous LDI-SST values in surface sediments and low mass flux of 1,13- and 1,15-diols compared to 1,14-diols suggest that Proboscia diatoms are the major sources of long-chain alkyl diols in this area rather than eustigmatophyte algae, and therefore the LDI cannot be applied in this region.

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    Biogeosciences
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    Biogeosciences
    Article . 2015 . Peer-reviewed
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    https://doi.org/10.5194/bgd-12...
    Preprint . 2015
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      Biogeosciences
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      Biogeosciences
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      https://doi.org/10.5194/bgd-12...
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    Authors: Velthuis, Mandy; De Senerpont Domis, Lisette N.; Frenken, Thijs; Stephan, Susanne; +8 Authors

    Contains fulltext : 175485.pdf (Publisher’s version ) (Open Access) 16 p.

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    NARCIS; Research@WUR
    Article . 2017
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    Radboud Repository
    Article . 2017
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      Article . 2017
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    Authors: H. Goelzer; H. Goelzer; H. Goelzer; S. Nowicki; +49 Authors

    Abstract. The Greenland ice sheet is one of the largest contributors to global meansea-level rise today and is expected to continue to lose mass as the Arcticcontinues to warm. The two predominant mass loss mechanisms are increasedsurface meltwater run-off and mass loss associated with the retreat ofmarine-terminating outlet glaciers. In this paper we use a large ensemble ofGreenland ice sheet models forced by output from a representative subset ofthe Coupled Model Intercomparison Project (CMIP5) global climate models to project ice sheet changes and sea-level risecontributions over the 21st century. The simulations are part of theIce Sheet Model Intercomparison Project for CMIP6 (ISMIP6). We estimate thesea-level contribution together with uncertainties due to future climateforcing, ice sheet model formulations and ocean forcing for the twogreenhouse gas concentration scenarios RCP8.5 and RCP2.6. The resultsindicate that the Greenland ice sheet will continue to lose mass in bothscenarios until 2100, with contributions of 90±50 and 32±17 mm to sea-level rise for RCP8.5 and RCP2.6, respectively. The largestmass loss is expected from the south-west of Greenland, which is governed bysurface mass balance changes, continuing what is already observed today.Because the contributions are calculated against an unforced controlexperiment, these numbers do not include any committed mass loss, i.e. massloss that would occur over the coming century if the climate forcingremained constant. Under RCP8.5 forcing, ice sheet model uncertaintyexplains an ensemble spread of 40 mm, while climate model uncertainty andocean forcing uncertainty account for a spread of 36 and 19 mm,respectively. Apart from those formally derived uncertainty ranges, thelargest gap in our knowledge is about the physical understanding andimplementation of the calving process, i.e. the interaction of the ice sheetwith the ocean. info:eu-repo/semantics/published

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    DI-fusion
    Article . 2020 . Peer-reviewed
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    St Andrews Research Repository
    Article . 2020 . Peer-reviewed
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    The Cryosphere
    Article . 2020
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    The Cryosphere (TC)
    Article . 2020
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    https://doi.org/10.5194/tc-201...
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    The Cryosphere; The Cryosphere (TC)
    Article . Preprint . 2020
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    Article . 2020
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    https://doi.org/10.5194/egusph...
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      The Cryosphere
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      The Cryosphere (TC)
      Article . 2020
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      https://doi.org/10.5194/tc-201...
      Preprint . 2020
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      The Cryosphere; The Cryosphere (TC)
      Article . Preprint . 2020
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      https://doi.org/10.5194/egusph...
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    Authors: Ana Lokmer; M. Anouk Goedknegt; David W. Thieltges; Dario Fiorentino; +4 Authors

    Unveiling the factors and processes that shape the dynamics of host associated microbial communities (microbiota) under natural conditions is an important part of understanding and predicting an organism's response to a changing environment. The microbiota is shaped by host (i.e., genetic) factors as well as by the biotic and abiotic environment. Studying natural variation of microbial community composition in multiple host genetic backgrounds across spatial as well as temporal scales represents a means to untangle this complex interplay. Here, we combined a spatially-stratified with a longitudinal sampling scheme within differentiated host genetic backgrounds by reciprocally transplanting Pacific oysters between two sites in the Wadden Sea (Sylt and Texel). To further differentiate contingent site from host genetic effects, we repeatedly sampled the same individuals over a summer season to examine structure, diversity and dynamics of individual hemolymph microbiota following experimental removal of resident microbiota by antibiotic treatment. While a large proportion of microbiome variation could be attributed to immediate environmental conditions, we observed persistent effects of antibiotic treatment and translocation suggesting that hemolymph microbial community dynamics is subject to within-microbiome interactions and host population specific factors. In addition, the analysis of spatial variation revealed that the within-site microenvironmental heterogeneity resulted in high small-scale variability, as opposed to large-scale (between-site) stability. Similarly, considerable within-individual temporal variability was in contrast with the overall temporal stability at the site level. Overall, our longitudinal, spatially-stratified sampling design revealed that variation in hemolymph microbiota is strongly influenced by site and immediate environmental conditions, whereas internal microbiome dynamics and oyster-related factors add to their long-term stability. The combination of small and large scale resolution of spatial and temporal observations therefore represents a crucial but underused tool to study host-associated microbiome dynamics. © 2016 Lokmer, Goedknegt, Thieltges, Fiorentino, Kuenzel, Baines and Wegner.

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    NIOZ Repository
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    Frontiers in Microbiology
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    Authors: Munneke, Peter Kuipers; McGrath, Daniel; Medley, Brooke; Luckman, Adrian; +14 Authors

    This work is funded by the Netherland Polar Programme, Netherlands Earth System Science Centre (NESSC), NSF OPP research grant 0732946, NERC/GEF grants NE/L006707/1, NE/L005409/1, NE/E012914/1, GEF loans 863, 890, 1028. The surface mass balance (SMB) of the Larsen C ice shelf (LCIS), Antarctica, is poorly constrained due to a dearth of in situ observations. Combining several geophysical techniques, we reconstruct spatial and temporal patterns of SMB over the LCIS. Continuous time series of snow height (2.5–6 years) at five locations allow for multi-year estimates of seasonal and annual SMB over the LCIS. There is high interannual variability in SMB as well as spatial variability: in the north, SMB is 0.40 ± 0.06 to 0.41 ± 0.04 m w.e. year−1, while farther south, SMB is up to 0.50 ± 0.05 m w.e. year−1. This difference between north and south is corroborated by winter snow accumulation derived from an airborne radar survey from 2009, which showed an average snow thickness of 0.34 m w.e. north of 66° S, and 0.40 m w.e. south of 68° S. Analysis of ground-penetrating radar from several field campaigns allows for a longer-term perspective of spatial variations in SMB: a particularly strong and coherent reflection horizon below 25–44 m of water-equivalent ice and firn is observed in radargrams collected across the shelf. We propose that this horizon was formed synchronously across the ice shelf. Combining snow height observations, ground and airborne radar, and SMB output from a regional climate model yields a gridded estimate of SMB over the LCIS. It confirms that SMB increases from north to south, overprinted by a gradient of increasing SMB to the west, modulated in the west by föhn-induced sublimation. Previous observations show a strong decrease in firn air content toward the west, which we attribute to spatial patterns of melt, refreezing, and densification rather than SMB. Publisher PDF Peer reviewed

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    The Cryosphere
    Article . 2017
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    The Cryosphere; The Cryosphere (TC)
    Article . 2017 . Peer-reviewed
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    Article . 2017 . Peer-reviewed
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    The Cryosphere (TC)
    Other literature type . 2018
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    The Cryosphere (TC)
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    https://doi.org/10.5194/tc-201...
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      The Cryosphere; The Cryosphere (TC)
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      The Cryosphere (TC)
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      The Cryosphere (TC)
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      https://doi.org/10.5194/tc-201...
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      DOAJ
      Article . 2017
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    Authors: Beddow, Helen M.; Liebrand, Diederik; Wilson, Douglas S.; Hilgen, Frits J.; +6 Authors

    Astronomical tuning of sediment sequences requires both unambiguous cycle pattern recognition in climate proxy records and astronomical solutions, as well as independent information about the phase relationship between these two. Here we present two different astronomically tuned age models for the Oligocene–Miocene transition (OMT) from Integrated Ocean Drilling Program Site U1334 (equatorial Pacific Ocean) to assess the effect tuning has on astronomically calibrated ages and the geologic timescale. These alternative age models (roughly from ∼ 22 to ∼ 24 Ma) are based on different tunings between proxy records and eccentricity: the first age model is based on an aligning CaCO3 weight (wt%) to Earth's orbital eccentricity, and the second age model is based on a direct age calibration of benthic foraminiferal stable carbon isotope ratios (δ13C) to eccentricity. To independently test which tuned age model and associated tuning assumptions are in best agreement with independent ages based on tectonic plate-pair spreading rates, we assign the tuned ages to magnetostratigraphic reversals identified in deep-marine magnetic anomaly profiles. Subsequently, we compute tectonic plate-pair spreading rates based on the tuned ages. The resultant alternative spreading-rate histories indicate that the CaCO3 tuned age model is most consistent with a conservative assumption of constant, or linearly changing, spreading rates. The CaCO3 tuned age model thus provides robust ages and durations for polarity chrons C6Bn.1n–C7n.1r, which are not based on astronomical tuning in the latest iteration of the geologic timescale. Furthermore, it provides independent evidence that the relatively large (several 10 000 years) time lags documented in the benthic foraminiferal isotope records relative to orbital eccentricity constitute a real feature of the Oligocene–Miocene climate system and carbon cycle. The age constraints from Site U1334 thus indicate that the delayed responses of the Oligocene–Miocene climate–cryosphere system and (marine) carbon cycle resulted from highly non-linear feedbacks to astronomical forcing.

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    Climate of the Past
    Article . 2018
    Data sources: NARCIS
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    Climate of the Past (CP)
    Article . 2018 . Peer-reviewed
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    Climate of the Past (CP)
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    Climate of the Past
    Article . 2018
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      Climate of the Past
      Article . 2018
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      Climate of the Past (CP)
      Article . 2018 . Peer-reviewed
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      Climate of the Past (CP)
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      Climate of the Past
      Article . 2018
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      Article . 2018
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    Authors: Lina, Russ; Boran, Kartal; Huub J M, Op den Camp; Martina, Sollai; +5 Authors

    International audience; Hydrothermally active sediments are highly productive, chemosynthetic areas which are characterized by the rapid turnover of particulate organic matter under extreme conditions in which ammonia is liberated. These systems might be suitable habitats for anaerobic ammonium oxidizing (anammox) bacteria but this has not been investigated in detail. Here we report the diversity and abundance of anammox bacteria in sediments that seep cold hydrocarbon-rich fluids and hydrothermal vent areas of the Guaymas Basin in the Cortés Sea using the unique functional anammox marker gene, hydrazine synthase (hzsA). All clones retrieved were closely associated to the "Candidatus Scalindua" genus. Phylogenetic analysis revealed two distinct clusters of hzsA sequences (Ca. Scalindua hzsA cluster I and II). Comparison of individual sequences from both clusters showed that several of these sequences had a similarity as low as 76% on nucleotide level. Based on the analysis of this phylomarker, a very high interspecies diversity within the marine anammox group is apparent. Absolute numbers of anammox bacteria in the sediments samples were determined by amplification of a 257 bp fragment of the hszA gene in a qPCR assay. The results indicate that numbers of anammox bacteria are generally higher in cold hydrocarbon-rich sediments compared to the vent areas and the reference zone. Ladderanes, lipids unique to anammox bacteria were also detected in several of the sediment samples corroborating the hzsA analysis. Due to the high concentrations of reduced sulfur compounds and its potential impact on the cycling of nitrogen we aimed to get an indication about the key players in the oxidation of sulfide in the Guaymas Basin sediments using the alpha subunit of the adenosine-5'-phosphosulfate (APS) reductase (aprA). Amplification of the aprA gene revealed a high number of gammaproteobacterial aprA genes covering the two sulfur-oxidizing bacteria aprA lineages as well as sulfate-reducers.

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    DOAJ-Articles
    Article . 2013
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    NIOZ Repository
    Article . 2013
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    Radboud Repository
    Article . 2013
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    NARCIS
    Article . 2013
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    Frontiers in Microbiology
    Article . 2013
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    Frontiers in Microbiology
    Article
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    Article . 2013
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      NIOZ Repository
      Article . 2013
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      Radboud Repository
      Article . 2013
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      Article . 2013
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      Frontiers in Microbiology
      Article . 2013
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      Frontiers in Microbiology
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      Article . 2013
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    Authors: Martin Rückamp; Heiko Goelzer; Angelika Humbert;

    Projections of the contribution of the Greenland ice sheet to future sea-level rise include uncertainties primarily due to the imposed climate forcing and the initial state of the ice sheet model. Several state-of-the-art ice flow models are currently being employed on various grid resolutions to estimate future mass changes in the framework of the Ice Sheet Model Intercomparison Project for CMIP6 (ISMIP6). Here we investigate the sensitivity to grid resolution on centennial sea-level contributions from the Greenland ice sheet and study the mechanism at play. To this end, we employ the finite-element higher-order ice flow model ISSM and conduct experiments with four different horizontal resolutions, namely 4, 2, 1 and 0.75 km. We run the simulation based on the ISMIP6 core GCM MIROC5 under the high emission scenario RCP8.5 and consider both atmospheric and oceanic forcing in full and separate scenarios. Under the full scenarios, finer simulations unveil up to ~5 % more sea-level rise compared to the coarser resolution. The sensitivity depends on the magnitude of outlet glacier retreat, which is implemented as a series of retreat masks following the ISMIP6 protocol. Without imposed retreat under atmosphere-only forcing, the resolution dependency exhibits an opposite behaviour with about ~ 5 % more sea-level contribution in the coarser resolution. The sea-level contribution indicates a converging behaviour

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    https://doi.org/10.5194/tc-201...
    Preprint . 2020
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    The Cryosphere (TC)
    Other literature type . 2020
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      https://doi.org/10.5194/tc-201...
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      The Cryosphere (TC)
      Other literature type . 2020
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