• European Marine Science
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• 14. Life underwater close

Corals and humans represent two extremely disparate metazoan lineages and are therefore useful for comparative evolutionary studies. Two lipid-based molecules that are central to human immunity, platelet-activating factor (PAF) and Lyso-PAF were recently identified in scleractinian corals. To identify processes in corals that involve these molecules, PAF and Lyso-PAF biosynthesis was quantified in conditions known to stimulate PAF production in mammals (tissue growth and exposure to elevated levels of ultraviolet light) and in conditions unique to corals (competing with neighbouring colonies over benthic space). Similar to observations in mammals, PAF production was higher in regions of active tissue growth and increased when corals were exposed to elevated levels of ultraviolet light. PAF production also increased when corals were attacked by the stinging cells of a neighbouring colony, though only the attacked coral exhibited an increase in PAF. This reaction was observed in adjacent areas of the colony, indicating that this response is coordinated across multiple polyps including those not directly subject to the stress. PAF and Lyso-PAF are involved in coral stress responses that are both shared with mammals and unique to the ecology of cnidarians.

Five hormone-treated female Japanese silver eels Anguilla japonica were tagged with ultrasonic transmitters and released by submersible in the West Pacific at seamounts of the West Mariana Ridge, their supposed spawning grounds. Four eels were tracked for 60 to 423 min in the vicinity of the seamounts. They did not settle at the seamounts but swam at a mean speed of 0.37 m s 1 into open water above deep ground. Their mean swimming depth ranged from 81 to 172 m. Experiments suggest that pre-matured A. japonica migrate to their spawning grounds in temperate warm water and at shallow depths.

Endozoicomonas bacteria are generally beneficial symbionts of diverse marine invertebrates including reef-building corals, sponges, sea squirts, sea slugs, molluscs, and Bryozoans. In contrast, the recently reported Ca. Endozoicomonas cretensis was identified as a vertebrate pathogen, causing epitheliocystis in fish larvae resulting in massive mortality. Here, we described the Ca. E. cretensis draft genome, currently undergoing genome decay as evidenced by massive insertion sequence (IS element) expansion and pseudogene formation. Many of the insertion sequences are also predicted to carry outward-directed promoters, implying that they may be able to modulate the expression of neighbouring coding sequences (CDSs). Comparative genomic analysis has revealed many Ca. E. cretensis-specific CDSs, phage integration and novel gene families. Potential virulence related CDSs and machineries were identified in the genome, including secretion systems and related effector proteins, and systems related to biofilm formation and directed cell movement. Mucin degradation would be of importance to a fish pathogen, and many candidate CDSs associated with this pathway have been identified. The genome may reflect a bacterium in the process of changing niche from symbiont to pathogen, through expansion of virulence genes and some loss of metabolic capacity. Genome Biology and Evolution, 10 (6) ISSN:1759-6653

Organisms’ size and shape have a profound influence on ecophysiological performance and evolutionary fitness, suggesting a link between morphology and diversity. While unimodal relationships between size and species richness were found for many taxa(1–4), much less is known on how richness is related to shape, in particular in the microbial realm. Here we analyse a novel globally extensive data set of marine unicellular phytoplankton, the major group of photosynthetic microbes, which exhibit an astounding diversity of cell sizes and shapes(5). We quantify the variation in size and shape and explore their effects on taxonomic diversity(6, 7). We find that cells of intermediate volume exhibit the greatest shape variation, with shapes ranging from oblate to extremely elongated forms, while very small and large cells are mostly compact (e.g., spherical or cubic). We show that cell shape has a strong effect on phytoplankton diversity, comparable in magnitude to the effect of cell volume, with both traits explaining up to 92% of the variance in phytoplankton diversity. Species richness decays exponentially with cell elongation and displays a log-normal dependence on cell volume, peaking for compact cells of intermediate volume. Our findings highlight different selective pressures and constraints on phytoplankton of different geometry and improve our understanding of the evolutionary rules of life.

This study has been motivated by reports of extraordinary change in the Arctic Ocean observed in recent decades. Most of these observations are based on synoptic measurements, while evaluation of anomalies requires an understanding of the underlying long‐term variability. Historical climatologies give reference means, and while these datasets are a reliable source of the mean Atlantic Layer temperature, they significantly underestimate variability. Using historical data, we calculated statistical parameters for selected Arctic Ocean regions. They demonstrate a high level of Atlantic Layer temperature variability in the Nansen Basin and sea‐surface salinity fluctuations on the Siberian shelf and the Amundsen Basin. These estimates suggest strong limitations on our ability to define amplitudes of anomalies by comparing recent synoptic measurements with climatologies, especially for regions characterized by strong variability.

This study aimed to analyze the role river floods play in triggering gravity flows and to investigate the role of submarine canyon systems as a conduit for terrigenous material to the deep sea. Two years of measurements in the Var canyon at depths ranging from 1200 m to 2350 m indicate that six floods of the Var River triggered hyperpycnal flows, an important mechanism for transporting particulate matter to the deep-sea floor. These sediment gravity flows were characterized by a sudden increase of current velocity that lasted 8 to 22 h and by downward particle fluxes that reached up to 600 g m(-2)d(-1) of particles and 3.1 g m(-2)d(-1) in terms of organic carbon. These large inputs of sediment and organic carbon may have a significant impact on deep-sea ecosystems and carbon storage in the Mediterranean Sea.

International audience; As we move towards shipboard-underway and automated systems for monitoring water quality and assessing ecological status, there is a need to evaluate how effective the existing monitoring systems are, and how we could improve them. Considering the existing limitations for processing numerous and complex data series generated from automated systems, and because of processes involved in phytoplankton blooms, this paper proposes a data-driven evaluation of an unsupervised classifier to optimize the way we track phytoplankton, including harmful algal blooms (HABs), and to identify the main associated hydrological conditions. We used in situ data from a portable flow-through automatic measuring system coupled with a multi-fixed-wavelength fluorometer implemented in the eastern English Channel during a bloom of Phaeocystis globosa (high biomass, non-toxic HAB species). This combination of technologies allowed high resolution online hydrographical and biological measurements, including spectral fluorescence as a means of quantifying phytoplankton biomass and simplifying the phytoplankton community structure inference. An unsupervised spectral clustering method was applied to this multi-parameter high-resolution time series, which allowed discrimination under near real-time of 6 to 33 contrasting water masses based on their abiotic and biotic characteristics. In addition, areas subject to extreme events such as HABs could be precisely identified, so controlling factors or their direct and indirect effects could be hierarchized. Considering the benefits and limitations of such a strategy, future applications of such methods will be important in the context of implementing the Marine Strategy Framework Directive.