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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Zapata-Hernández, Germán; Gajardo-Rojas, Martina; Calderón-Seguel, Matías; Muñoz, Ariel A.; +5 Authors

    Advances and knowledge gaps on climate change impacts on honey bees and beekeeping: A systematic review

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    ZENODO
    Other literature type . 2024
    License: CC BY
    Data sources: ZENODO
    ZENODO
    Data Paper . 2024
    License: CC BY
    Data sources: Datacite
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      ZENODO
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      ZENODO
      Data Paper . 2024
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      Data sources: Datacite
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    Authors: Taverne L.; CAPASSO, LUIGI;

    The osteology of Prognathoglossum kalassyi, an osteoglossiform teleostean fish from the marine Cenomanian of En Nammoura in Lebanon, is described in details. This fish exhibits an important prognathism. The frontal is broad and short. The temporal fossa is located very laterally on the braincase. There is a small postfrontal behind the frontal. The parietal forms the dorsal border of the temporal fossa. The saccular-lagenar bulla is hypertrophied. This series of specialized characters is shared by the Recent osteoglossoid Pantodon and leads to range this Lebanese fossil genus within the family Pantodontidae.

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    https://doi.org/10.26028/cybiu...
    Data Paper . 2012
    Data sources: Datacite
    ARUdA
    Article . 2012
    Data sources: ARUdA
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Open Marine Archivearrow_drop_down
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      https://doi.org/10.26028/cybiu...
      Data Paper . 2012
      Data sources: Datacite
      ARUdA
      Article . 2012
      Data sources: ARUdA
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Schneider, Lisa; Anestis, Konstantinos; Mansour, Joost; Anschütz, Anna; +80 Authors

    An important functional trait of organisms is their trophic mode. It determines their position within food webs, as well as their function within an ecosystem. For the better part of the 20th century, aquatic protist communities were thought to consist mainly of producers (phytoplankton) and consumers (protozooplankton). Phytoplankton cover their energy requirements through photosynthesis (phototrophy), while protozooplankton graze on prey and organic particles (phagotrophy). However, over the past decades, it was shown that another trophic group (mixoplankton) comprise a notable part of aquatic protist communities. Mixoplankton employ a third trophic mode by combining phototrophy and phagotrophy (mixotrophy). Due to the historical dichotomy, it is not straightforward to gain adequate and correct information on the trophic mode of aquatic protists. Long hours of literature research or expert knowledge are needed to correctly assign trophic modes. Additionally, aquatic protists also have a long history of undergoing taxonomic changes which make it difficult to compare past and present literature. While WoRMS, the World Register of Marine Species, keeps track of the taxonomic changes and assigns each species a unique AphiaID that can be linked to its various historic and present taxonomic hierarchy, there is currently no machine-readable database to query aquatic protists for their trophic modes. This paper describes a dataset that was submitted to WoRMS and links aquatic protist taxa, with a focus on marine taxa, to their AphiaID and their trophic mode. The bulk of the data used for this dataset stems from (routine) monitoring stations in the North Sea and the Baltic Sea. The data were augmented and checked against state-of-the-art knowledge on mixoplankton taxa by consulting literature and experts. Thus, this dataset provides a first attempt to make the trophic mode of aquatic protists easily accessible in both a human- and machine-readable format.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Pensoft; Biodiversit...arrow_drop_down
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    DOAJ
    Article . 2020
    Data sources: DOAJ
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    Biodiversity Data Journal
    Other literature type . Article . 2020 . Peer-reviewed
    License: CC BY
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    DI-fusion
    Article . 2020 . Peer-reviewed
    Data sources: DI-fusion
    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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    ZENODO
    Article . 2020
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Pensoft; Biodiversit...arrow_drop_down
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      Article . 2020
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      Biodiversity Data Journal
      Other literature type . Article . 2020 . Peer-reviewed
      License: CC BY
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      DI-fusion
      Article . 2020 . Peer-reviewed
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
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      ZENODO
      Article . 2020
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Annegret Nicolai; Muriel Guernion; Sarah Guillocheau; Kevin Hoeffner; +61 Authors

    Background - The Biological Field Station of Paimpont (Station Biologique de Paimpont, SBP), owned by the University of Rennes and located in the Brocéliande Forest of Brittany (France), has been hosting student scientific research and field trips during the last 60 years. The study area of the SBP is a landscape mosaic of 17 ha composed of gorse moors, forests, prairies, ponds and creeks. Land use has evolved over time. Historical surveys by students and researchers focused on insects and birds. With this study, we aimed to increase the range of taxa observations, document changes in species composition and landscape and provide a basis for interdisciplinary research perspectives. We gathered historical data, implemented an all-taxon biodiversity inventory (ATBI) in different habitats of the SBP study area, measured abiotic factors in the air, water and soil and performed a photographical landscape observation during the BioBlitz held in July 2017. New information - During the 24 h BioBlitz, organised by the SBP and the EcoBio lab from the University of Rennes and the French National Center of Scientific Research (CNRS), different habitats were individually sampled. Seventy-seven experts, accompanied by 120 citizens and 12 young people participating in the European Volunteer Service, observed, identified and databased 660 species covering 5 kingdoms, 8 phyla, 21 classes, 90 orders and 247 families. In total, there were 1819 occurrences including records identified to higher taxon ranks, thereby adding one more kingdom and four more phyla. Historical data collection resulted in 1176 species and 4270 occurrences databased. We also recorded 13 climatic parameters, 10 soil parameters and 18 water parameters during the BioBlitz. Current habitats were mapped and socio-ecological landscape changes were assessed with a diachronic approach using 32 historical photographs and historical maps. The coupling of historical biodiversity data with new biotic and abiotic data and a photographic comparison of landscape changes allows an integrative understanding of how the SBP changed from agriculturally-used land to a managed natural area within the last 60 years. Hence, this BioBlitz represents an important holistic sampling of biodiversity for studies on trophic webs or on trophic interactions or on very diverse, but connected, habitats. The integration of social, biotic and abiotic data opens innovative research opportunities on the evolution of socio-ecosystems and landscapes. International audience

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    Pensoft; Biodiversity Data Journal
    Article . Data Paper . 2020
    License: CC BY
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    Biodiversity Data Journal
    Article . 2020 . Peer-reviewed
    License: CC BY
    Data sources: Crossref
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    ZENODO
    Article . 2020
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    DOAJ
    Article . 2020
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      Pensoft; Biodiversity Data Journal
      Article . Data Paper . 2020
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      Biodiversity Data Journal
      Article . 2020 . Peer-reviewed
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      ZENODO
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      DOAJ
      Article . 2020
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    Authors: Wint; G R W. and Morley; D. and Alexander; N.;

    The mechanisms underlying associations between rodent diversity and the spread of rodent borne diseases are still unclear. The number of potential host species may influence a disease by either spreading the pathogen (or vectors) more rapidly or conversely by reducing contact with other hosts through the effects of dilution. In either case the number of potential hosts may impact on the distribution of a disease or its vectors. Four spatially modelled indices of rodent species richness have been generated to support distribution modelling of rodent borne diseases specifically initially focussing on Hantaviruses and tick borne diseases. 

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    Journal of Open Public Health Data
    Article
    License: CC BY
    Data sources: UnpayWall
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    Open Health Data
    Article . 2013
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    Article . 2013
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      Journal of Open Public Health Data
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      Article . 2013
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    Authors: Quero, Jean-claude; Spitz, Jerome; Vayne, Jean-jacques;

    From the 8(th) to the 11(th) April 2007, at Reunion Island (Indian Ocean), some fish were collected at sea surface after the eruption of the Piton de la Fournaise. Among these were eleven specimens of Neocentropogon profundus (Scorpaenoidei: Tetrarogidae). Six species of this genus have been described: two from the Pacific Ocean, N. japonicus Matsubara, 1943 and N. trimaculatus Chan, 1966; four from the Indian Ocean, N. affinis (Lloyd, 1909) from the Gulf of Martaban, Myanmar, N. aeglefinus (Weber, 1913) from the Halmahera Sea, Timor Sea, probably a junior synonym of N. affinis, N. profundus (Smith, 1958) off Mozambique, and N. mesedai Klausewitz, 1985 from the Mismaris-Trough, Red Sea. The eleven specimens found at Reunion constitute the largest available collection for N. profundus, previously known from only two specimens. This study provides an important new set of counts and measurements for this species and also documents its coloration and the shape of its otoliths.

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    https://doi.org/10.26028/cybiu...
    Data Paper . 2011
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      https://doi.org/10.26028/cybiu...
      Data Paper . 2011
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    Authors: Brosens, D.; Breine, J.; Van Thuyne, G.; Belpaire, C.; +2 Authors

    Abstract The Research Institute for Nature and Forest (INBO) has been performing standardized fish stock assessments in Flanders, Belgium. This Flemish Fish Monitoring Network aims to assess fish populations in public waters at regular time intervals in both inland waters and estuaries. This monitoring was set up in support of the Water Framework Directive, the Habitat Directive, the Eel Regulation, the Red List of fishes, fish stock management, biodiversity research, and to assess the colonization and spreading of non-native fish species. The collected data are consolidated in the Fish Information System or VIS. From VIS, the occurrence data are now published at the INBO IPT as two datasets: ‘VIS - Fishes in inland waters in Flanders, Belgium’ and ‘VIS - Fishes in estuarine waters in Flanders, Belgium’. Together these datasets represent a complete overview of the distribution and abundance of fish species pertaining in Flanders from late 1992 to the end of 2012. This data paper discusses both datasets together, as both have a similar methodology and structure. The inland waters dataset contains over 350,000 fish observations, sampled between 1992 and 2012 from over 2,000 locations in inland rivers, streams, canals, and enclosed waters in Flanders. The dataset includes 64 fish species, as well as a number of non-target species (mainly crustaceans). The estuarine waters dataset contains over 44,000 fish observations, sampled between 1995 and 2012 from almost 50 locations in the estuaries of the rivers Yser and Scheldt (“Zeeschelde”), including two sampling sites in the Netherlands. The dataset includes 69 fish species and a number of non-target crustacean species. To foster broad and collaborative use, the data are dedicated to the public domain under a Creative Commons Zero waiver and reference the INBO norms for data use.

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    ZooKeys
    Article . 2015
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    ZENODO; ZooKeys
    Article . 2015 . Peer-reviewed
    License: CC BY
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    Article . 2015
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      ZooKeys
      Article . 2015
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    Authors: Khoufi, Widien; Dufour, Jean-louis; Jaziri, Hela; Elfehri, Safouene; +5 Authors

    Les paramètres de croissance d’une espèce sont fondamentaux pour son étude biologique ou dynamique. La qualité de l’estimation de ces paramètres a une répercussion directe sur la précision des estimations du stock et, par conséquent, sur la gestion des pêcheries. Dans le but d’améliorer la gestion des stocks, il est recommandé d’étudier la croissance par sexe. Les otolithes ont été utilisés dans le présent travail pour estimer ces paramètres et ceux du merlu, Merluccius merluccius Rafinesque, 1810, sont connus pour être particulièrement difficiles à interpréter. De ce fait, le premier anneau de croissance a été préalablement validé à partir de l’analyse des accroissements journaliers des juvéniles. De plus, l’interprétation a tenu compte des derniers résultats du rapport du CIEM coopération de recherche. Au total, 1599 individus, capturés sur la côte nord de la Tunisie (sud-ouest du bassin méditerranéen) ont été examinés, représentant 638 femelles, 771 mâles et 190 immatures. Des coupes transversales ont été utilisées pour l’interprétation des otolithes et l’estimation d’âge du merlu. La croissance par sexe a été estimée : TL = 102,850 (1 – e–0,141 (t + 1,345)) pour les femelles, TL = 40,7 (1 – e–0,619 (t + 0,992)) pour les mâles et pour les deux sexes combinés. La validation du premier anneau de croissance et les connaissances issues des études récentes de marquage ont permis de mettre en évidence un modèle de croissance très différent de celui qui avait été décrit antérieurement. Ce travail montre que l’âge observé précédemment a été surestimé comme c’est le cas dans d’autres zones géographiques (golfes du Lion et de Gascogne). De plus, pour une taille et un poids défini, les femelles croissent plus vite que les mâles. Cette différence peut s’expliquer par la différence de l’indice de performance (Φ), estimé à 3,17 pour les femelles et 3,01 pour les mâles. Growth parameters of any species are fundamental for biological or dynamic studies. The quality of the estimation for these parameters directly impacts on species stock assessment and, as a consequence, on fisheries management. In order to improve fishery and species stock management, growth analysis, especially by sex, is recommended. In this study, otoliths were used to estimate growth parameters of Merluccius merluccius Rafinesque, 1810. Hake is well-known as being a species in which otolith interpretation is extremely difficult. To estimate growth parameters, the first daily increment was validated as the tool for age determination. Otolith interpretation was done according to the last results of ICES cooperative research report. In total, a sample of 1599 M. merluccius were examined, consisting in 638 females, 771 males and 190 immature juveniles. They were caught in southwest of Mediterranean Sea, along the northern coast of Tunisia. Transverse sections were used for the interpretation of growth (annual) increments and age estimation. Growth by sex was considered: TL = 102.850 * (1 – e –0.141 * (t + 1.345)) for females, TL = 40.700 * (1 – e –0.619 * (t + 0.992)) for males and for combined sexes. Validation of the first growth annual increment and knowledge from recent tagging studies have helped in highlighting a different growth model of M. merluccius from that previously described. Our study showed that ages previously reported were overestimated, as observed in other regions (Gulf of Lion and Bay of Biscay). Moreover, at defined length and weight, females grow at a faster rate than males. This difference was explained by the difference in performance index (Φ), which is 3.17 for females and 3.01 for males.

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    https://doi.org/10.26028/cybiu...
    Data Paper . 2014
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      https://doi.org/10.26028/cybiu...
      Data Paper . 2014
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    Authors: Luz Amadei Martínez; J. Mortelmans; Nick Dillen; E. Debusschere; +1 Authors

    This paper describes a phytoplankton data series generated through systematic observations in the Belgian Part of the North Sea (BPNS). Phytoplankton samples were collected during multidisciplinary sampling campaigns, visiting nine nearshore stations with monthly frequency and an additional eight offshore stations on a seasonal basis. The data series contain taxon-specific phytoplankton densities determined by analysis with the Flow Cytometer And Microscope (FlowCAM®) and associated image-based classification. The classification is performed by two separate semi-automated classification systems, followed by manual validation by taxonomic experts. To date, 637,819 biological particles have been collected and identified, yielding a large dataset of validated phytoplankton images. The collection and processing of the 2017–2018 dataset are described, along with its data curation, quality control and data storage. In addition, the classification of images using image classification algorithms, based on convolutional neural networks (CNN) from 2019 onwards, is also described. Data are published in a standardised format together with environmental parameters, accompanied by extensive metadata descriptions and finally labelled with digital identifiers for traceability. The data are published under a CC‐BY 4.0 licence, allowing the use of the data under the condition of providing the reference to the source.

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    Pensoft; Biodiversity Data Journal
    Article . Data Paper . 2020
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    Biodiversity Data Journal
    Article . 2020 . Peer-reviewed
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    Authors: Ghiglione C; Alvaro MC; Griffiths HJ; Linse K; +1 Authors

    Information regarding the molluscs in this dataset is based on the Rauschert dredge samples collected during the Latitudinal Gradient Program (LGP) on board the R/V “Italica” in the Ross Sea (Antarctica) in the austral summer 2004. A total of 18 epibenthic dredge deployments/samplings have been performed at four different locations at depths ranging from 84 to 515m by using a Rauschert dredge with a mesh size of 500µm. In total 8,359 specimens have been collected belonging to a total of 161 species. Considering this dataset in terms of occurrences, it corresponds to 505 discrete distributional records (incidence data). Of these, in order of abundance, 5,965 specimens were Gastropoda (accounting for 113 species), 1,323 were Bivalvia (accounting for 36 species), 949 were Aplacophora (accounting for 7 species), 74 specimens were Scaphopoda (3 species), 38 were Monoplacophora (1 species) and, finally, 10 specimens were Polyplacophora (1 species). This data set represents the first large-scale survey of benthic micro-molluscs for the area and provides important information about the distribution of several species, which have been seldom or never recorded before in the Ross Sea. All vouchers are permanently stored at the Italian National Antarctic Museum (MNA), Section of Genoa, enabling future comparison and crosschecking. This material is also currently under study, from a molecular point of view, by the barcoding project “BAMBi” (PNRA 2010/A1.10).

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    Authors: Zapata-Hernández, Germán; Gajardo-Rojas, Martina; Calderón-Seguel, Matías; Muñoz, Ariel A.; +5 Authors

    Advances and knowledge gaps on climate change impacts on honey bees and beekeeping: A systematic review

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    Authors: Taverne L.; CAPASSO, LUIGI;

    The osteology of Prognathoglossum kalassyi, an osteoglossiform teleostean fish from the marine Cenomanian of En Nammoura in Lebanon, is described in details. This fish exhibits an important prognathism. The frontal is broad and short. The temporal fossa is located very laterally on the braincase. There is a small postfrontal behind the frontal. The parietal forms the dorsal border of the temporal fossa. The saccular-lagenar bulla is hypertrophied. This series of specialized characters is shared by the Recent osteoglossoid Pantodon and leads to range this Lebanese fossil genus within the family Pantodontidae.

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    Authors: Schneider, Lisa; Anestis, Konstantinos; Mansour, Joost; Anschütz, Anna; +80 Authors

    An important functional trait of organisms is their trophic mode. It determines their position within food webs, as well as their function within an ecosystem. For the better part of the 20th century, aquatic protist communities were thought to consist mainly of producers (phytoplankton) and consumers (protozooplankton). Phytoplankton cover their energy requirements through photosynthesis (phototrophy), while protozooplankton graze on prey and organic particles (phagotrophy). However, over the past decades, it was shown that another trophic group (mixoplankton) comprise a notable part of aquatic protist communities. Mixoplankton employ a third trophic mode by combining phototrophy and phagotrophy (mixotrophy). Due to the historical dichotomy, it is not straightforward to gain adequate and correct information on the trophic mode of aquatic protists. Long hours of literature research or expert knowledge are needed to correctly assign trophic modes. Additionally, aquatic protists also have a long history of undergoing taxonomic changes which make it difficult to compare past and present literature. While WoRMS, the World Register of Marine Species, keeps track of the taxonomic changes and assigns each species a unique AphiaID that can be linked to its various historic and present taxonomic hierarchy, there is currently no machine-readable database to query aquatic protists for their trophic modes. This paper describes a dataset that was submitted to WoRMS and links aquatic protist taxa, with a focus on marine taxa, to their AphiaID and their trophic mode. The bulk of the data used for this dataset stems from (routine) monitoring stations in the North Sea and the Baltic Sea. The data were augmented and checked against state-of-the-art knowledge on mixoplankton taxa by consulting literature and experts. Thus, this dataset provides a first attempt to make the trophic mode of aquatic protists easily accessible in both a human- and machine-readable format.

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    Biodiversity Data Journal
    Other literature type . Article . 2020 . Peer-reviewed
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    DI-fusion
    Article . 2020 . Peer-reviewed
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    ZENODO
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      Biodiversity Data Journal
      Other literature type . Article . 2020 . Peer-reviewed
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      DI-fusion
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      ZENODO
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    Authors: Annegret Nicolai; Muriel Guernion; Sarah Guillocheau; Kevin Hoeffner; +61 Authors

    Background - The Biological Field Station of Paimpont (Station Biologique de Paimpont, SBP), owned by the University of Rennes and located in the Brocéliande Forest of Brittany (France), has been hosting student scientific research and field trips during the last 60 years. The study area of the SBP is a landscape mosaic of 17 ha composed of gorse moors, forests, prairies, ponds and creeks. Land use has evolved over time. Historical surveys by students and researchers focused on insects and birds. With this study, we aimed to increase the range of taxa observations, document changes in species composition and landscape and provide a basis for interdisciplinary research perspectives. We gathered historical data, implemented an all-taxon biodiversity inventory (ATBI) in different habitats of the SBP study area, measured abiotic factors in the air, water and soil and performed a photographical landscape observation during the BioBlitz held in July 2017. New information - During the 24 h BioBlitz, organised by the SBP and the EcoBio lab from the University of Rennes and the French National Center of Scientific Research (CNRS), different habitats were individually sampled. Seventy-seven experts, accompanied by 120 citizens and 12 young people participating in the European Volunteer Service, observed, identified and databased 660 species covering 5 kingdoms, 8 phyla, 21 classes, 90 orders and 247 families. In total, there were 1819 occurrences including records identified to higher taxon ranks, thereby adding one more kingdom and four more phyla. Historical data collection resulted in 1176 species and 4270 occurrences databased. We also recorded 13 climatic parameters, 10 soil parameters and 18 water parameters during the BioBlitz. Current habitats were mapped and socio-ecological landscape changes were assessed with a diachronic approach using 32 historical photographs and historical maps. The coupling of historical biodiversity data with new biotic and abiotic data and a photographic comparison of landscape changes allows an integrative understanding of how the SBP changed from agriculturally-used land to a managed natural area within the last 60 years. Hence, this BioBlitz represents an important holistic sampling of biodiversity for studies on trophic webs or on trophic interactions or on very diverse, but connected, habitats. The integration of social, biotic and abiotic data opens innovative research opportunities on the evolution of socio-ecosystems and landscapes. International audience

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    Pensoft; Biodiversity Data Journal
    Article . Data Paper . 2020
    License: CC BY
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    Biodiversity Data Journal
    Article . 2020 . Peer-reviewed
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    ZENODO
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      Pensoft; Biodiversity Data Journal
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    Authors: Wint; G R W. and Morley; D. and Alexander; N.;

    The mechanisms underlying associations between rodent diversity and the spread of rodent borne diseases are still unclear. The number of potential host species may influence a disease by either spreading the pathogen (or vectors) more rapidly or conversely by reducing contact with other hosts through the effects of dilution. In either case the number of potential hosts may impact on the distribution of a disease or its vectors. Four spatially modelled indices of rodent species richness have been generated to support distribution modelling of rodent borne diseases specifically initially focussing on Hantaviruses and tick borne diseases. 

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    Journal of Open Public Health Data
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    Open Health Data
    Article . 2013
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    Article . 2013
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      Journal of Open Public Health Data
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    Authors: Quero, Jean-claude; Spitz, Jerome; Vayne, Jean-jacques;

    From the 8(th) to the 11(th) April 2007, at Reunion Island (Indian Ocean), some fish were collected at sea surface after the eruption of the Piton de la Fournaise. Among these were eleven specimens of Neocentropogon profundus (Scorpaenoidei: Tetrarogidae). Six species of this genus have been described: two from the Pacific Ocean, N. japonicus Matsubara, 1943 and N. trimaculatus Chan, 1966; four from the Indian Ocean, N. affinis (Lloyd, 1909) from the Gulf of Martaban, Myanmar, N. aeglefinus (Weber, 1913) from the Halmahera Sea, Timor Sea, probably a junior synonym of N. affinis, N. profundus (Smith, 1958) off Mozambique, and N. mesedai Klausewitz, 1985 from the Mismaris-Trough, Red Sea. The eleven specimens found at Reunion constitute the largest available collection for N. profundus, previously known from only two specimens. This study provides an important new set of counts and measurements for this species and also documents its coloration and the shape of its otoliths.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ArchiMer - Instituti...arrow_drop_down
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    https://doi.org/10.26028/cybiu...
    Data Paper . 2011
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      https://doi.org/10.26028/cybiu...
      Data Paper . 2011
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    Authors: Brosens, D.; Breine, J.; Van Thuyne, G.; Belpaire, C.; +2 Authors

    Abstract The Research Institute for Nature and Forest (INBO) has been performing standardized fish stock assessments in Flanders, Belgium. This Flemish Fish Monitoring Network aims to assess fish populations in public waters at regular time intervals in both inland waters and estuaries. This monitoring was set up in support of the Water Framework Directive, the Habitat Directive, the Eel Regulation, the Red List of fishes, fish stock management, biodiversity research, and to assess the colonization and spreading of non-native fish species. The collected data are consolidated in the Fish Information System or VIS. From VIS, the occurrence data are now published at the INBO IPT as two datasets: ‘VIS - Fishes in inland waters in Flanders, Belgium’ and ‘VIS - Fishes in estuarine waters in Flanders, Belgium’. Together these datasets represent a complete overview of the distribution and abundance of fish species pertaining in Flanders from late 1992 to the end of 2012. This data paper discusses both datasets together, as both have a similar methodology and structure. The inland waters dataset contains over 350,000 fish observations, sampled between 1992 and 2012 from over 2,000 locations in inland rivers, streams, canals, and enclosed waters in Flanders. The dataset includes 64 fish species, as well as a number of non-target species (mainly crustaceans). The estuarine waters dataset contains over 44,000 fish observations, sampled between 1995 and 2012 from almost 50 locations in the estuaries of the rivers Yser and Scheldt (“Zeeschelde”), including two sampling sites in the Netherlands. The dataset includes 69 fish species and a number of non-target crustacean species. To foster broad and collaborative use, the data are dedicated to the public domain under a Creative Commons Zero waiver and reference the INBO norms for data use.

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    ZooKeys
    Article . 2015
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    Article . 2015 . Peer-reviewed
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    Article . 2015
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    Authors: Khoufi, Widien; Dufour, Jean-louis; Jaziri, Hela; Elfehri, Safouene; +5 Authors

    Les paramètres de croissance d’une espèce sont fondamentaux pour son étude biologique ou dynamique. La qualité de l’estimation de ces paramètres a une répercussion directe sur la précision des estimations du stock et, par conséquent, sur la gestion des pêcheries. Dans le but d’améliorer la gestion des stocks, il est recommandé d’étudier la croissance par sexe. Les otolithes ont été utilisés dans le présent travail pour estimer ces paramètres et ceux du merlu, Merluccius merluccius Rafinesque, 1810, sont connus pour être particulièrement difficiles à interpréter. De ce fait, le premier anneau de croissance a été préalablement validé à partir de l’analyse des accroissements journaliers des juvéniles. De plus, l’interprétation a tenu compte des derniers résultats du rapport du CIEM coopération de recherche. Au total, 1599 individus, capturés sur la côte nord de la Tunisie (sud-ouest du bassin méditerranéen) ont été examinés, représentant 638 femelles, 771 mâles et 190 immatures. Des coupes transversales ont été utilisées pour l’interprétation des otolithes et l’estimation d’âge du merlu. La croissance par sexe a été estimée : TL = 102,850 (1 – e–0,141 (t + 1,345)) pour les femelles, TL = 40,7 (1 – e–0,619 (t + 0,992)) pour les mâles et pour les deux sexes combinés. La validation du premier anneau de croissance et les connaissances issues des études récentes de marquage ont permis de mettre en évidence un modèle de croissance très différent de celui qui avait été décrit antérieurement. Ce travail montre que l’âge observé précédemment a été surestimé comme c’est le cas dans d’autres zones géographiques (golfes du Lion et de Gascogne). De plus, pour une taille et un poids défini, les femelles croissent plus vite que les mâles. Cette différence peut s’expliquer par la différence de l’indice de performance (Φ), estimé à 3,17 pour les femelles et 3,01 pour les mâles. Growth parameters of any species are fundamental for biological or dynamic studies. The quality of the estimation for these parameters directly impacts on species stock assessment and, as a consequence, on fisheries management. In order to improve fishery and species stock management, growth analysis, especially by sex, is recommended. In this study, otoliths were used to estimate growth parameters of Merluccius merluccius Rafinesque, 1810. Hake is well-known as being a species in which otolith interpretation is extremely difficult. To estimate growth parameters, the first daily increment was validated as the tool for age determination. Otolith interpretation was done according to the last results of ICES cooperative research report. In total, a sample of 1599 M. merluccius were examined, consisting in 638 females, 771 males and 190 immature juveniles. They were caught in southwest of Mediterranean Sea, along the northern coast of Tunisia. Transverse sections were used for the interpretation of growth (annual) increments and age estimation. Growth by sex was considered: TL = 102.850 * (1 – e –0.141 * (t + 1.345)) for females, TL = 40.700 * (1 – e –0.619 * (t + 0.992)) for males and for combined sexes. Validation of the first growth annual increment and knowledge from recent tagging studies have helped in highlighting a different growth model of M. merluccius from that previously described. Our study showed that ages previously reported were overestimated, as observed in other regions (Gulf of Lion and Bay of Biscay). Moreover, at defined length and weight, females grow at a faster rate than males. This difference was explained by the difference in performance index (Φ), which is 3.17 for females and 3.01 for males.

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    https://doi.org/10.26028/cybiu...
    Data Paper . 2014
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      https://doi.org/10.26028/cybiu...
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    Authors: Luz Amadei Martínez; J. Mortelmans; Nick Dillen; E. Debusschere; +1 Authors

    This paper describes a phytoplankton data series generated through systematic observations in the Belgian Part of the North Sea (BPNS). Phytoplankton samples were collected during multidisciplinary sampling campaigns, visiting nine nearshore stations with monthly frequency and an additional eight offshore stations on a seasonal basis. The data series contain taxon-specific phytoplankton densities determined by analysis with the Flow Cytometer And Microscope (FlowCAM®) and associated image-based classification. The classification is performed by two separate semi-automated classification systems, followed by manual validation by taxonomic experts. To date, 637,819 biological particles have been collected and identified, yielding a large dataset of validated phytoplankton images. The collection and processing of the 2017–2018 dataset are described, along with its data curation, quality control and data storage. In addition, the classification of images using image classification algorithms, based on convolutional neural networks (CNN) from 2019 onwards, is also described. Data are published in a standardised format together with environmental parameters, accompanied by extensive metadata descriptions and finally labelled with digital identifiers for traceability. The data are published under a CC‐BY 4.0 licence, allowing the use of the data under the condition of providing the reference to the source.

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    Pensoft; Biodiversity Data Journal
    Article . Data Paper . 2020
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    Article . 2020
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    Biodiversity Data Journal
    Article . 2020 . Peer-reviewed
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      Biodiversity Data Journal
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    Authors: Ghiglione C; Alvaro MC; Griffiths HJ; Linse K; +1 Authors

    Information regarding the molluscs in this dataset is based on the Rauschert dredge samples collected during the Latitudinal Gradient Program (LGP) on board the R/V “Italica” in the Ross Sea (Antarctica) in the austral summer 2004. A total of 18 epibenthic dredge deployments/samplings have been performed at four different locations at depths ranging from 84 to 515m by using a Rauschert dredge with a mesh size of 500µm. In total 8,359 specimens have been collected belonging to a total of 161 species. Considering this dataset in terms of occurrences, it corresponds to 505 discrete distributional records (incidence data). Of these, in order of abundance, 5,965 specimens were Gastropoda (accounting for 113 species), 1,323 were Bivalvia (accounting for 36 species), 949 were Aplacophora (accounting for 7 species), 74 specimens were Scaphopoda (3 species), 38 were Monoplacophora (1 species) and, finally, 10 specimens were Polyplacophora (1 species). This data set represents the first large-scale survey of benthic micro-molluscs for the area and provides important information about the distribution of several species, which have been seldom or never recorded before in the Ross Sea. All vouchers are permanently stored at the Italian National Antarctic Museum (MNA), Section of Genoa, enabling future comparison and crosschecking. This material is also currently under study, from a molecular point of view, by the barcoding project “BAMBi” (PNRA 2010/A1.10).

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