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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Chris Ware; Jørgen Berge; Anders Jelmert; Steffen M. Olsen; +6 Authors

    Several decades of research on invasive marine species have yielded a broad understanding of the nature of species invasion mechanisms and associated threats globally. However, this is not true of the Arctic, a region where ongoing climatic changes may promote species invasion. Here, we evaluated risks associated with non-indigenous propagule loads discharged with ships' ballast water to the high-Arctic archipelago, Svalbard, as a case study for the wider Arctic. We sampled and identified transferred propagules using traditional and DNA barcoding techniques. We then assessed the suitability of the Svalbard coast for non-indigenous species under contemporary and future climate scenarios using ecophysiological models based on critical temperature and salinity reproductive thresholds. Ships discharging ballast water in Svalbard carried high densities of zooplankton (mean 1522 ± 335 SE individuals m−3), predominately comprised of indigenous species. Ballast water exchange did not prevent non-indigenous species introduction. Non-indigenous coastal species were present in all except one of 16 ballast water samples (mean 144 ± 67 SE individuals m−3), despite five of the eight ships exchanging ballast water en route. Of a total of 73 taxa, 36 species including 23 non-indigenous species were identified. Of those 23, sufficient data permitted evaluation of the current and future colonization potential for eight widely known invaders. With the exception of one of these species, modelled suitability indicated that the coast of Svalbard is unsuitable presently; under the 2100 Representative Concentration Pathway (RCP) 8·5 climate scenario, however, modelled suitability will favour colonization for six species. Synthesis and applications. We show that current ballast water management practices do not prevent non-indigenous species from being transferred to the Arctic. Consequences of these shortcomings will be shipping-route dependent, but will likely magnify over time: our models indicate future conditions will favour the colonization of non-indigenous species Arctic-wide. Invasion threats will be greatest where shipping transfers organisms across biogeographic realms, and for these shipping routes ballast water treatment technologies may be required to prevent impacts. Our results also highlight critical gaps in our understanding of ballast water management efficacy and prioritization. Thereby, our study provides an agenda for research and policy development. Published version. Source at http://doi.org/10.1111/1365-2664.12566.

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    Journal of Applied Ecology
    Article . 2015 . Peer-reviewed
    License: CC BY
    Data sources: Crossref
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    Journal of Applied Ecology
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      Journal of Applied Ecology
      Article . 2015 . Peer-reviewed
      License: CC BY
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      Journal of Applied Ecology
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    Authors: M. Lizotte; B. Juhls; B. Juhls; B. Juhls; +52 Authors

    Climate warming and related drivers of soil thermal change in the Arctic are expected to modify the distribution and dynamics of carbon contained in perennially frozen grounds. Thawing of permafrost in the Mackenzie Delta region of northwestern Canada, coupled with increases in river discharge and coastal erosion, trigger the release of terrestrial organic matter (OMt) from the largest Arctic drainage basin in North America into the Arctic Ocean. While this process is ongoing, well-established, and its rate is accelerating, the fate of the newly-mobilized organic matter, as it transits from the watershed through the delta and into the marine system, remains poorly understood. In the framework of the European Horizon 2020 Nunataryuk programme, and as part of the Work Package 4 (WP4) Coastal Waters theme, four field expeditions were conducted in the Mackenzie Delta region and southern Beaufort Sea from April to September 2019. The temporal sampling design allowed the survey of ambient conditions in the coastal waters under full ice cover prior to the spring freshet, during ice break-up in summer, as well as anterior to the freeze-up period in fall. To capture the fluvial-marine transition zone, and with distinct challenges related to shallow waters and changing seasonal and meteorological conditions, the field sampling was conducted in close partnership with members of the communities of Aklavik, Inuvik and Tuktoyaktuk, using several platforms: helicopters, snowmobiles and small boats. Water column profiles of physical and optical variables were measured in situ, while surface water, groundwater and sediment samples were collected and preserved for the determination of the composition and sources of OMt, including particulate and dissolved organic carbon (POC, DOC), and chromophoric dissolved organic matter (CDOM), as well as a suite of physical, chemical and biological variables. Here we present an overview of the standardized datasets, including hydrographic profiles, remote sensing reflectance, temperature and salinity, particle absorption, nutrients, dissolved organic carbon, particulate organic carbon, particulate organic nitrogen, colored dissolved organic matter absorption, fluorescent dissolved organic matter intensity, suspended particulate matter, total particulate carbon, total particulate nitrogen, stable water isotopes, radon in water, bacterial abundance, and a string of phytoplankton pigments including total chlorophyll. Datasets and related metadata can be found in Juhls et al. 2021. https://doi.pangaea.de/10.1594/PANGAEA.937587.

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    https://doi.org/10.5194/essd-2...
    Preprint . 2022 . Peer-reviewed
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    Earth System Science Data
    Article . 2023
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    Earth System Science Data (ESSD)
    Other literature type . 2022
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    ZENODO; Earth System Science Data (ESSD)
    Article . 2023 . Peer-reviewed
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    Earth System Science Data
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      https://doi.org/10.5194/essd-2...
      Preprint . 2022 . Peer-reviewed
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      Earth System Science Data
      Article . 2023
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      Other literature type . 2022
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      ZENODO; Earth System Science Data (ESSD)
      Article . 2023 . Peer-reviewed
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      Article . 2023
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    Authors: Horneck, G.; Walter, N.; Westall, F.; Grenfell, J.L.; +16 Authors

    Table of Contents 1. Introduction 1.1. The project AstRoMap within the Framework Programme for Research and Innovation (FP7) of the European Union 1.2. The European astrobiology environment and landscape in Europe 1.3. Setting the scene: timeline and astrobiology concepts 2. The Astrobiology Roadmap for Europe 3. Research Topic 1: Origin and Evolution of Planetary Systems 3.1. State of the art 3.2. Key objectives 3.3. Approach to achieve the key objectives 3.4. European strengths and needs 4. Research Topic 2: Origins of Organic Compounds in Space 4.1. State of the art 4.2. Key objectives 4.3. Approach to achieve the key objectives 4.4. European strengths and needs 5. Research Topic 3: Rock-Water-Carbon Interactions, Organic Synthesis on Earth, and Steps to Life 5.1. State of the art 5.2. Key objectives 5.3. Approach to achieve the key objectives 5.4. European strengths and needs 6. Research Topic 4: Life and Habitability 6.1. State of the art 6.2. Key objectives 6.3. Approach to achieve the key objectives 6.4. European strengths and needs 7. Research Topic 5: Biosignatures as Facilitating Life Detection 7.1. State of the art 7.2. Key objectives 7.3. Approach to achieve the key objectives 7.4. European strengths and needs 8. Conclusions and Recommendations 8.1. Cross-cutting issues of relevance 8.2. Towards a better coordination of astrobiology research in Europe—the need for a pan-European platform Acknowledgments References Abbreviations Used Abstract The European AstRoMap project (supported by the European Commission Seventh Framework Programme) surveyed the state of the art of astrobiology in Europe and beyond and produced the first European roadmap for astrobiology research. In the context of this roadmap, astrobiology is understood as the study of the origin, evolution, and distribution of life in the context of cosmic evolution; this includes habitability in the Solar System and beyond. The AstRoMap Roadmap identifies five research topics, specifies several key scientific objectives for each topic, and suggests ways to achieve all the objectives. The five AstRoMap Research Topics are • Research Topic 1: Origin and Evolution of Planetary Systems• Research Topic 2: Origins of Organic Compounds in Space• Research Topic 3: Rock-Water-Carbon Interactions, Organic Synthesis on Earth, and Steps to Life• Research Topic 4: Life and Habitability• Research Topic 5: Biosignatures as Facilitating Life Detection It is strongly recommended that steps be taken towards the definition and implementation of a European Astrobiology Platform (or Institute) to streamline and optimize the scientific return by using a coordinated infrastructure and funding system. Key Words: Astrobiology roadmap—Europe—Origin and evolution of life—Habitability—Life detection—Life in extreme environments. Astrobiology 16, 201–243.

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    Astrobiology
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    Authors: Brannigan, Liam; Johnson, Helen; Lique, Camille; Nycander, Jonas; +1 Authors

    Isolated anticyclones are frequently observed below the mixed layer in the Arctic Ocean. Some of these sub-surface anticyclones are thought to originate at surface fronts. However, previous idealized simulations with no surface stress show that only cyclone-anticyclone dipoles can propagate away from baroclinically unstable surface fronts. Numerical simulations of fronts subject to a surface stress presented here show that a surface stress in the same direction as the geostrophic flow inhibits dipole propagation away from the front. On the other hand, a surface stress in the opposite direction to the geostrophic flow helps dipoles to propagate away from the front. Regardless of the surface stress at the point of dipole formation, these dipoles can be broken up on a timescale of days when a surface stress is applied in the right direction. The dipole breakup leads to the deeper anticyclonic component becoming an isolated sub-surface eddy. The breakup of the dipole occurs because the cyclonic component of the dipole in the mixed layer is subject to an additional advection due to the Ekman flow. When the Ekman transport has a component oriented from the anticyclonic part of the dipole towards the cyclonic part then the cyclone is advected away from the anticyclone and the dipole is broken up. When the Ekman transport is in other directions relative to the dipole axis it also leads to deviations in the trajectory of the dipole. A scaling is presented for the rate at which the surface cyclone is advected that holds across a range of mixed layer depths and surface stress magnitudes in these simulations. The results may be relevant to other regions of the ocean with similar near-surface stratification profiles. International audience

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    Authors: Eero, Margit; Hansen, Jakob Hemmer; Hüssy, Karin;

    Cod in the Baltic Sea is assessed and managed as two separate stocks, i.e. eastern and western Baltic cod. The eastern Baltic cod has recently started to recover after several decades of severe depletion. In the present study, we suggest that the recovery of the eastern Baltic cod population has also substantially increased cod abundance in a specific area of the adjacent western Baltic management unit. This is investigated through long time-series of spatially resolved stock assessment data supplemented by genetic analyses of origin of the cod currently found in the transition area between the two populations. Due to immigrating cod from the east, there are currently large spatial differences in cod abundance and mean weight in the western Baltic management unit that raise new management concerns. First, the high abundance of cod of eastern origin found in the western Baltic management unit can mask the relatively poor state of the western Baltic cod population. Second, the current fishing mortality estimates for the entire western Baltic management unit, used as basis for fisheries management, are difficult to interpret as these are highly influenced by mixing of biological populations and the spatial distribution of fisheries.

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    ICES Journal of Marine Science
    Other literature type . Article . 2014 . Peer-reviewed
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      ICES Journal of Marine Science
      Other literature type . Article . 2014 . Peer-reviewed
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    Authors: Janin Schaffer; Ralph Timmermann; Jan Erik Arndt; Steen Savstrup Kristensen; +3 Authors

    The ocean plays an important role in modulating the mass balance of the polar ice sheets by interacting with the ice shelves in Antarctica and with the marine-terminating outlet glaciers in Greenland. Given that the flux of warm water onto the continental shelf and into the sub-ice cavities is steered by complex bathymetry, a detailed topography data set is an essential ingredient for models that address ice–ocean interaction. We followed the spirit of the global RTopo-1 data set and compiled consistent maps of global ocean bathymetry, upper and lower ice surface topographies, and global surface height on a spherical grid with now 30 arcsec grid spacing. For this new data set, called RTopo-2, we used the General Bathymetric Chart of the Oceans (GEBCO_2014) as the backbone and added the International Bathymetric Chart of the Arctic Ocean version 3 (IBCAOv3) and the International Bathymetric Chart of the Southern Ocean (IBCSO) version 1. While RTopo-1 primarily aimed at a good and consistent representation of the Antarctic ice sheet, ice shelves, and sub-ice cavities, RTopo-2 now also contains ice topographies of the Greenland ice sheet and outlet glaciers. In particular, we aimed at a good representation of the fjord and shelf bathymetry surrounding the Greenland continent. We modified data from earlier gridded products in the areas of Petermann Glacier, Hagen Bræ, and Sermilik Fjord, assuming that sub-ice and fjord bathymetries roughly follow plausible Last Glacial Maximum ice flow patterns. For the continental shelf off Northeast Greenland and the floating ice tongue of Nioghalvfjerdsfjorden Glacier at about 79° N, we incorporated a high-resolution digital bathymetry model considering original multibeam survey data for the region. Radar data for surface topographies of the floating ice tongues of Nioghalvfjerdsfjorden Glacier and Zachariæ Isstrøm have been obtained from the data centres of Technical University of Denmark (DTU), Operation Icebridge (NASA/NSF), and Alfred Wegener Institute (AWI). For the Antarctic ice sheet/ice shelves, RTopo-2 largely relies on the Bedmap-2 product but applies corrections for the geometry of Getz, Abbot, and Fimbul ice shelf cavities. The data set is available in full and in regional subsets in NetCDF format from the PANGAEA database at doi:10.1594/PANGAEA.856844.

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    https://doi.org/10.5194/essd-2...
    Preprint . 2016 . Peer-reviewed
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    Earth System Science Data (ESSD)
    Article . 2016 . Peer-reviewed
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    Earth System Science Data (ESSD)
    Other literature type . 2018
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    Earth System Science Data (ESSD)
    Article . Preprint
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    DOAJ
    Article . 2016
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    Copernicus Publications
    Other literature type . 2018
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      https://doi.org/10.5194/essd-2...
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      Earth System Science Data (ESSD)
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      Earth System Science Data (ESSD)
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      DOAJ
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    Authors: Riley, Teal R.; Flowerdew, Michael J.; Pankhurst, Robert J.; Curtis, Mike L.; +3 Authors

    Early Jurassic silicic volcanic rocks of the Chon Aike Province (V1: 187 – 182 Ma) are recognized from many localities in the southern Antarctic Peninsula and NE Patagonia and are essentially coeval with the extensive Karoo (182 Ma) and Ferrar (183 Ma) large igneous provinces of pre-breakup Gondwana. Until recently, plutonic rocks of this age were considered either rare in or absent from the Antarctic Peninsula batholith, which was thought to have been mainly constructed during the Middle Jurassic and the mid-Cretaceous. New U–Pb zircon geochronology from the Antarctic Peninsula and recently published U–Pb ages from elsewhere in the Peninsula and Patagonia are used to demonstrate the more widespread nature of Early Jurassic plutonism. Eight samples are dated here from the central and southern Antarctic Peninsula. They are all moderately to strongly foliated granitoids (tonalite, granite, granodiorite) and locally represent the crystalline basement. They yield ages in the range 188 – 181 Ma, which overlap with published ages of 185 – 180 Ma from granitoids from elsewhere on the Antarctic Peninsula and from the Subcordilleran plutonic belt of Patagonia (185 – 181 Ma). Whereas Early Jurassic plutons of the Subcordilleran plutonic belt of Patagonia are directly related to subduction processes along the proto-Pacific margin of Gondwana, coeval volcanic rocks of the Chon Aike Province are interpreted to be directly associated with extension and plume activity during the initial stages of Gondwana breakup. This indicates that subduction was continuing when Chon Aike Province volcanism started. The Early Jurassic plutonism on the Antarctic Peninsula is transitional between subduction-related and breakup-related magmatism. Supplementary material : Cathodoluminescence images of analysed zircon grains from sites on the Antarctic Peninsula are available at https://doi.org/10.6084/m9.figshare.c.3521973

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    Journal of the Geological Society
    Article . 2016 . Peer-reviewed
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      Journal of the Geological Society
      Article . 2016 . Peer-reviewed
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    Authors: Chirico, Angelica;

    Tropical seagrass beds and coral reefs are among the most productive and diverse ecosystems on Earth and provide ecosystem services, such as fish production and coastal protection, and support livelihoods of millions of people. At the same time, these ecosystems are threatened globally by anthropogenic disturbances, such as overfishing, pollution and global warming. Implementation of marine protected areas (MPAs) is one of the main strategy to achieve conservation goals and has proven to restore biodiversity and fish stocks, at least on coral reefs. However, studies assessing protection effects on seagrass communities are scarce. Moreover, many MPAs are government-managed and increasingly criticized for excluding and marginalizing local communities. Therefore, MPAs that are managed by the communities themselves, i.e. community-managed MPAs, constitute a promising yet poorly studied alternative. The aim of this thesis was to investigate ecological effects of government- and community-managed MPAs on seagrasses, corals, and their associated benthic and fish communities in the tropical seascape. We used a space-for-time replacement approach and surveyed coral and seagrass communities in fished areas, recently established community MPAs (1-6 years of protection) and old government MPAs (20-44 years) in coastal Kenya, East Africa. Results suggest that only a few years of protection in community MPAs can increase diversity of benthic communities (Paper I), and also protect economically valuable fish stocks (Paper II). Protection also appeared to induce a community shift, from dominance of pioneering and stress-tolerant coral and seagrass species in fished areas, to structurally complex climax species in old government MPAs (Paper I). Additionally, effects of protection on seagrass communities seems to be most apparent in the mid-lagoon by favoring seagrass species with high shoot density; an effect that was mostly caused by species turnover but also phenotypic plasticity. Meanwhile, effects in the shallow intertidal and reef zones were weak or non-existing (Paper III). Finally, a two-year field experiment suggests that a community MPA speeds up seagrass recovery and decrease sediment erosion following experimental disturbance, most likely by reducing additional disturbances (e.g. fishing practices) on recovering plants and sediments (Paper IV). Based on these results I make three conclusions. First, MPAs seem to protect seagrasses in a similar way as they protect corals, suggesting that MPAs can aid local seagrass conservation. Seagrass beds should therefore be actively incorporated in marine spatial planning. Second, even though recently established community MPAs were not as effective as the old government MPAs, they appear to benefit both seagrass and coral communities (Paper I, II, IV). Given that previous studies show that they can also fulfill socio-economic community level-values (e.g. involvement in MPA design and enforcement), our findings emphasize their potential as a complement to government MPAs. Third, MPAs are an effective tool to protect seagrass and coral communities from local disturbances, particularly in mid-lagoon and reef areas, but they do not appear to protect the shallow intertidal seagrass beds (Paper III), possibly because of MPA-related tourism activities. This highlights the need for more detailed MPA evaluations, but also the need for more holistic conservation approaches, like integrated coastal zone management. At the time of the doctoral defense, the following papers were unpublished and had a status as follows: Paper 1: Manuscript. Paper 3: Manuscript. Paper 4: Manuscript.

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    Authors: Malene G. Ulrik; José Martin Pujolar; Anne-Laure Ferchaud; Magnus W. Jacobsen; +7 Authors

    Background: The two North Atlantic eel species, the European and the American eel, represent an ideal system in which to study parallel selection patterns due to their sister species status and the presence of ongoing gene flow. A panel of 80 coding-gene SNPs previously analyzed in American eel was used to genotype European eel individuals (glass eels) from 8 sampling locations across the species distribution. We tested for single-generation signatures of spatially varying selection in European eel by searching for elevated genetic differentiation using F ST-based outlier tests and by testing for significant associations between allele frequencies and environmental variables. Results: We found signatures of possible selection at a total of 11 coding-gene SNPs. Candidate genes for local selection constituted mainly genes with a major role in metabolism as well as defense genes. Contrary to what has been found for American eel, only 2 SNPs in our study correlated with differences in temperature, which suggests that other explanatory variables may play a role. None of the genes found to be associated with explanatory variables in European eel showed any correlations with environmental factors in the previous study in American eel. Conclusions: The different signatures of selection between species could be due to distinct selective pressures associated with the much longer larval migration for European eel relative to American eel. The lack of parallel selection in North Atlantic eels could also be due to most phenotypic traits being polygenic, thus reducing the likelihood of selection acting on the same genes in both species. International audience

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    Authors: Björnerås, C.; Weyhenmeyer, Gesa A.; Evans, C. D.; Gessner, M. O.; +17 Authors

    AbstractRecent reports of increasing iron (Fe) concentrations in freshwaters are of concern, given the fundamental role of Fe in biogeochemical processes. Still, little is known about the frequency and geographical distribution of Fe trends or about the underlying drivers. We analyzed temporal trends of Fe concentrations across 340 water bodies distributed over 10 countries in northern Europe and North America in order to gain a clearer understanding of where, to what extent, and why Fe concentrations are on the rise. We found that Fe concentrations have significantly increased in 28% of sites, and decreased in 4%, with most positive trends located in northern Europe. Regions with rising Fe concentrations tend to coincide with those with organic carbon (OC) increases. Fe and OC increases may not be directly mechanistically linked, but may nevertheless be responding to common regional‐scale drivers such as declining sulfur deposition or hydrological changes. A role of hydrological factors was supported by covarying trends in Fe and dissolved silica, as these elements tend to stem from similar soil depths. A positive relationship between Fe increases and conifer cover suggests that changing land use and expanded forestry could have contributed to enhanced Fe export, although increases were also observed in nonforested areas. We conclude that the phenomenon of increasing Fe concentrations is widespread, especially in northern Europe, with potentially significant implications for wider ecosystem biogeochemistry, and for the current browning of freshwaters.

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    Global Biogeochemical Cycles
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      Global Biogeochemical Cycles
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    Authors: Chris Ware; Jørgen Berge; Anders Jelmert; Steffen M. Olsen; +6 Authors

    Several decades of research on invasive marine species have yielded a broad understanding of the nature of species invasion mechanisms and associated threats globally. However, this is not true of the Arctic, a region where ongoing climatic changes may promote species invasion. Here, we evaluated risks associated with non-indigenous propagule loads discharged with ships' ballast water to the high-Arctic archipelago, Svalbard, as a case study for the wider Arctic. We sampled and identified transferred propagules using traditional and DNA barcoding techniques. We then assessed the suitability of the Svalbard coast for non-indigenous species under contemporary and future climate scenarios using ecophysiological models based on critical temperature and salinity reproductive thresholds. Ships discharging ballast water in Svalbard carried high densities of zooplankton (mean 1522 ± 335 SE individuals m−3), predominately comprised of indigenous species. Ballast water exchange did not prevent non-indigenous species introduction. Non-indigenous coastal species were present in all except one of 16 ballast water samples (mean 144 ± 67 SE individuals m−3), despite five of the eight ships exchanging ballast water en route. Of a total of 73 taxa, 36 species including 23 non-indigenous species were identified. Of those 23, sufficient data permitted evaluation of the current and future colonization potential for eight widely known invaders. With the exception of one of these species, modelled suitability indicated that the coast of Svalbard is unsuitable presently; under the 2100 Representative Concentration Pathway (RCP) 8·5 climate scenario, however, modelled suitability will favour colonization for six species. Synthesis and applications. We show that current ballast water management practices do not prevent non-indigenous species from being transferred to the Arctic. Consequences of these shortcomings will be shipping-route dependent, but will likely magnify over time: our models indicate future conditions will favour the colonization of non-indigenous species Arctic-wide. Invasion threats will be greatest where shipping transfers organisms across biogeographic realms, and for these shipping routes ballast water treatment technologies may be required to prevent impacts. Our results also highlight critical gaps in our understanding of ballast water management efficacy and prioritization. Thereby, our study provides an agenda for research and policy development. Published version. Source at http://doi.org/10.1111/1365-2664.12566.

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    Journal of Applied Ecology
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      Journal of Applied Ecology
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      Journal of Applied Ecology
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    Authors: M. Lizotte; B. Juhls; B. Juhls; B. Juhls; +52 Authors

    Climate warming and related drivers of soil thermal change in the Arctic are expected to modify the distribution and dynamics of carbon contained in perennially frozen grounds. Thawing of permafrost in the Mackenzie Delta region of northwestern Canada, coupled with increases in river discharge and coastal erosion, trigger the release of terrestrial organic matter (OMt) from the largest Arctic drainage basin in North America into the Arctic Ocean. While this process is ongoing, well-established, and its rate is accelerating, the fate of the newly-mobilized organic matter, as it transits from the watershed through the delta and into the marine system, remains poorly understood. In the framework of the European Horizon 2020 Nunataryuk programme, and as part of the Work Package 4 (WP4) Coastal Waters theme, four field expeditions were conducted in the Mackenzie Delta region and southern Beaufort Sea from April to September 2019. The temporal sampling design allowed the survey of ambient conditions in the coastal waters under full ice cover prior to the spring freshet, during ice break-up in summer, as well as anterior to the freeze-up period in fall. To capture the fluvial-marine transition zone, and with distinct challenges related to shallow waters and changing seasonal and meteorological conditions, the field sampling was conducted in close partnership with members of the communities of Aklavik, Inuvik and Tuktoyaktuk, using several platforms: helicopters, snowmobiles and small boats. Water column profiles of physical and optical variables were measured in situ, while surface water, groundwater and sediment samples were collected and preserved for the determination of the composition and sources of OMt, including particulate and dissolved organic carbon (POC, DOC), and chromophoric dissolved organic matter (CDOM), as well as a suite of physical, chemical and biological variables. Here we present an overview of the standardized datasets, including hydrographic profiles, remote sensing reflectance, temperature and salinity, particle absorption, nutrients, dissolved organic carbon, particulate organic carbon, particulate organic nitrogen, colored dissolved organic matter absorption, fluorescent dissolved organic matter intensity, suspended particulate matter, total particulate carbon, total particulate nitrogen, stable water isotopes, radon in water, bacterial abundance, and a string of phytoplankton pigments including total chlorophyll. Datasets and related metadata can be found in Juhls et al. 2021. https://doi.pangaea.de/10.1594/PANGAEA.937587.

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    https://doi.org/10.5194/essd-2...
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    Earth System Science Data
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    ZENODO; Earth System Science Data (ESSD)
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      https://doi.org/10.5194/essd-2...
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      ZENODO; Earth System Science Data (ESSD)
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    Authors: Horneck, G.; Walter, N.; Westall, F.; Grenfell, J.L.; +16 Authors

    Table of Contents 1. Introduction 1.1. The project AstRoMap within the Framework Programme for Research and Innovation (FP7) of the European Union 1.2. The European astrobiology environment and landscape in Europe 1.3. Setting the scene: timeline and astrobiology concepts 2. The Astrobiology Roadmap for Europe 3. Research Topic 1: Origin and Evolution of Planetary Systems 3.1. State of the art 3.2. Key objectives 3.3. Approach to achieve the key objectives 3.4. European strengths and needs 4. Research Topic 2: Origins of Organic Compounds in Space 4.1. State of the art 4.2. Key objectives 4.3. Approach to achieve the key objectives 4.4. European strengths and needs 5. Research Topic 3: Rock-Water-Carbon Interactions, Organic Synthesis on Earth, and Steps to Life 5.1. State of the art 5.2. Key objectives 5.3. Approach to achieve the key objectives 5.4. European strengths and needs 6. Research Topic 4: Life and Habitability 6.1. State of the art 6.2. Key objectives 6.3. Approach to achieve the key objectives 6.4. European strengths and needs 7. Research Topic 5: Biosignatures as Facilitating Life Detection 7.1. State of the art 7.2. Key objectives 7.3. Approach to achieve the key objectives 7.4. European strengths and needs 8. Conclusions and Recommendations 8.1. Cross-cutting issues of relevance 8.2. Towards a better coordination of astrobiology research in Europe—the need for a pan-European platform Acknowledgments References Abbreviations Used Abstract The European AstRoMap project (supported by the European Commission Seventh Framework Programme) surveyed the state of the art of astrobiology in Europe and beyond and produced the first European roadmap for astrobiology research. In the context of this roadmap, astrobiology is understood as the study of the origin, evolution, and distribution of life in the context of cosmic evolution; this includes habitability in the Solar System and beyond. The AstRoMap Roadmap identifies five research topics, specifies several key scientific objectives for each topic, and suggests ways to achieve all the objectives. The five AstRoMap Research Topics are • Research Topic 1: Origin and Evolution of Planetary Systems• Research Topic 2: Origins of Organic Compounds in Space• Research Topic 3: Rock-Water-Carbon Interactions, Organic Synthesis on Earth, and Steps to Life• Research Topic 4: Life and Habitability• Research Topic 5: Biosignatures as Facilitating Life Detection It is strongly recommended that steps be taken towards the definition and implementation of a European Astrobiology Platform (or Institute) to streamline and optimize the scientific return by using a coordinated infrastructure and funding system. Key Words: Astrobiology roadmap—Europe—Origin and evolution of life—Habitability—Life detection—Life in extreme environments. Astrobiology 16, 201–243.

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    Astrobiology
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    Hal-Diderot
    Article . 2016
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    Authors: Brannigan, Liam; Johnson, Helen; Lique, Camille; Nycander, Jonas; +1 Authors

    Isolated anticyclones are frequently observed below the mixed layer in the Arctic Ocean. Some of these sub-surface anticyclones are thought to originate at surface fronts. However, previous idealized simulations with no surface stress show that only cyclone-anticyclone dipoles can propagate away from baroclinically unstable surface fronts. Numerical simulations of fronts subject to a surface stress presented here show that a surface stress in the same direction as the geostrophic flow inhibits dipole propagation away from the front. On the other hand, a surface stress in the opposite direction to the geostrophic flow helps dipoles to propagate away from the front. Regardless of the surface stress at the point of dipole formation, these dipoles can be broken up on a timescale of days when a surface stress is applied in the right direction. The dipole breakup leads to the deeper anticyclonic component becoming an isolated sub-surface eddy. The breakup of the dipole occurs because the cyclonic component of the dipole in the mixed layer is subject to an additional advection due to the Ekman flow. When the Ekman transport has a component oriented from the anticyclonic part of the dipole towards the cyclonic part then the cyclone is advected away from the anticyclone and the dipole is broken up. When the Ekman transport is in other directions relative to the dipole axis it also leads to deviations in the trajectory of the dipole. A scaling is presented for the rate at which the surface cyclone is advected that holds across a range of mixed layer depths and surface stress magnitudes in these simulations. The results may be relevant to other regions of the ocean with similar near-surface stratification profiles. International audience

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    Authors: Eero, Margit; Hansen, Jakob Hemmer; Hüssy, Karin;

    Cod in the Baltic Sea is assessed and managed as two separate stocks, i.e. eastern and western Baltic cod. The eastern Baltic cod has recently started to recover after several decades of severe depletion. In the present study, we suggest that the recovery of the eastern Baltic cod population has also substantially increased cod abundance in a specific area of the adjacent western Baltic management unit. This is investigated through long time-series of spatially resolved stock assessment data supplemented by genetic analyses of origin of the cod currently found in the transition area between the two populations. Due to immigrating cod from the east, there are currently large spatial differences in cod abundance and mean weight in the western Baltic management unit that raise new management concerns. First, the high abundance of cod of eastern origin found in the western Baltic management unit can mask the relatively poor state of the western Baltic cod population. Second, the current fishing mortality estimates for the entire western Baltic management unit, used as basis for fisheries management, are difficult to interpret as these are highly influenced by mixing of biological populations and the spatial distribution of fisheries.

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    ICES Journal of Marine Science
    Other literature type . Article . 2014 . Peer-reviewed
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      ICES Journal of Marine Science
      Other literature type . Article . 2014 . Peer-reviewed
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    Authors: Janin Schaffer; Ralph Timmermann; Jan Erik Arndt; Steen Savstrup Kristensen; +3 Authors

    The ocean plays an important role in modulating the mass balance of the polar ice sheets by interacting with the ice shelves in Antarctica and with the marine-terminating outlet glaciers in Greenland. Given that the flux of warm water onto the continental shelf and into the sub-ice cavities is steered by complex bathymetry, a detailed topography data set is an essential ingredient for models that address ice–ocean interaction. We followed the spirit of the global RTopo-1 data set and compiled consistent maps of global ocean bathymetry, upper and lower ice surface topographies, and global surface height on a spherical grid with now 30 arcsec grid spacing. For this new data set, called RTopo-2, we used the General Bathymetric Chart of the Oceans (GEBCO_2014) as the backbone and added the International Bathymetric Chart of the Arctic Ocean version 3 (IBCAOv3) and the International Bathymetric Chart of the Southern Ocean (IBCSO) version 1. While RTopo-1 primarily aimed at a good and consistent representation of the Antarctic ice sheet, ice shelves, and sub-ice cavities, RTopo-2 now also contains ice topographies of the Greenland ice sheet and outlet glaciers. In particular, we aimed at a good representation of the fjord and shelf bathymetry surrounding the Greenland continent. We modified data from earlier gridded products in the areas of Petermann Glacier, Hagen Bræ, and Sermilik Fjord, assuming that sub-ice and fjord bathymetries roughly follow plausible Last Glacial Maximum ice flow patterns. For the continental shelf off Northeast Greenland and the floating ice tongue of Nioghalvfjerdsfjorden Glacier at about 79° N, we incorporated a high-resolution digital bathymetry model considering original multibeam survey data for the region. Radar data for surface topographies of the floating ice tongues of Nioghalvfjerdsfjorden Glacier and Zachariæ Isstrøm have been obtained from the data centres of Technical University of Denmark (DTU), Operation Icebridge (NASA/NSF), and Alfred Wegener Institute (AWI). For the Antarctic ice sheet/ice shelves, RTopo-2 largely relies on the Bedmap-2 product but applies corrections for the geometry of Getz, Abbot, and Fimbul ice shelf cavities. The data set is available in full and in regional subsets in NetCDF format from the PANGAEA database at doi:10.1594/PANGAEA.856844.

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    https://doi.org/10.5194/essd-2...
    Preprint . 2016 . Peer-reviewed
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    Earth System Science Data (ESSD)
    Article . 2016 . Peer-reviewed
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    Earth System Science Data (ESSD)
    Other literature type . 2018
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    Earth System Science Data (ESSD)
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      https://doi.org/10.5194/essd-2...
      Preprint . 2016 . Peer-reviewed
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      Earth System Science Data (ESSD)
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      Earth System Science Data (ESSD)
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    Authors: Riley, Teal R.; Flowerdew, Michael J.; Pankhurst, Robert J.; Curtis, Mike L.; +3 Authors

    Early Jurassic silicic volcanic rocks of the Chon Aike Province (V1: 187 – 182 Ma) are recognized from many localities in the southern Antarctic Peninsula and NE Patagonia and are essentially coeval with the extensive Karoo (182 Ma) and Ferrar (183 Ma) large igneous provinces of pre-breakup Gondwana. Until recently, plutonic rocks of this age were considered either rare in or absent from the Antarctic Peninsula batholith, which was thought to have been mainly constructed during the Middle Jurassic and the mid-Cretaceous. New U–Pb zircon geochronology from the Antarctic Peninsula and recently published U–Pb ages from elsewhere in the Peninsula and Patagonia are used to demonstrate the more widespread nature of Early Jurassic plutonism. Eight samples are dated here from the central and southern Antarctic Peninsula. They are all moderately to strongly foliated granitoids (tonalite, granite, granodiorite) and locally represent the crystalline basement. They yield ages in the range 188 – 181 Ma, which overlap with published ages of 185 – 180 Ma from granitoids from elsewhere on the Antarctic Peninsula and from the Subcordilleran plutonic belt of Patagonia (185 – 181 Ma). Whereas Early Jurassic plutons of the Subcordilleran plutonic belt of Patagonia are directly related to subduction processes along the proto-Pacific margin of Gondwana, coeval volcanic rocks of the Chon Aike Province are interpreted to be directly associated with extension and plume activity during the initial stages of Gondwana breakup. This indicates that subduction was continuing when Chon Aike Province volcanism started. The Early Jurassic plutonism on the Antarctic Peninsula is transitional between subduction-related and breakup-related magmatism. Supplementary material : Cathodoluminescence images of analysed zircon grains from sites on the Antarctic Peninsula are available at https://doi.org/10.6084/m9.figshare.c.3521973

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    Journal of the Geological Society
    Article . 2016 . Peer-reviewed
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      Journal of the Geological Society
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    Authors: Chirico, Angelica;

    Tropical seagrass beds and coral reefs are among the most productive and diverse ecosystems on Earth and provide ecosystem services, such as fish production and coastal protection, and support livelihoods of millions of people. At the same time, these ecosystems are threatened globally by anthropogenic disturbances, such as overfishing, pollution and global warming. Implementation of marine protected areas (MPAs) is one of the main strategy to achieve conservation goals and has proven to restore biodiversity and fish stocks, at least on coral reefs. However, studies assessing protection effects on seagrass communities are scarce. Moreover, many MPAs are government-managed and increasingly criticized for excluding and marginalizing local communities. Therefore, MPAs that are managed by the communities themselves, i.e. community-managed MPAs, constitute a promising yet poorly studied alternative. The aim of this thesis was to investigate ecological effects of government- and community-managed MPAs on seagrasses, corals, and their associated benthic and fish communities in the tropical seascape. We used a space-for-time replacement approach and surveyed coral and seagrass communities in fished areas, recently established community MPAs (1-6 years of protection) and old government MPAs (20-44 years) in coastal Kenya, East Africa. Results suggest that only a few years of protection in community MPAs can increase diversity of benthic communities (Paper I), and also protect economically valuable fish stocks (Paper II). Protection also appeared to induce a community shift, from dominance of pioneering and stress-tolerant coral and seagrass species in fished areas, to structurally complex climax species in old government MPAs (Paper I). Additionally, effects of protection on seagrass communities seems to be most apparent in the mid-lagoon by favoring seagrass species with high shoot density; an effect that was mostly caused by species turnover but also phenotypic plasticity. Meanwhile, effects in the shallow intertidal and reef zones were weak or non-existing (Paper III). Finally, a two-year field experiment suggests that a community MPA speeds up seagrass recovery and decrease sediment erosion following experimental disturbance, most likely by reducing additional disturbances (e.g. fishing practices) on recovering plants and sediments (Paper IV). Based on these results I make three conclusions. First, MPAs seem to protect seagrasses in a similar way as they protect corals, suggesting that MPAs can aid local seagrass conservation. Seagrass beds should therefore be actively incorporated in marine spatial planning. Second, even though recently established community MPAs were not as effective as the old government MPAs, they appear to benefit both seagrass and coral communities (Paper I, II, IV). Given that previous studies show that they can also fulfill socio-economic community level-values (e.g. involvement in MPA design and enforcement), our findings emphasize their potential as a complement to government MPAs. Third, MPAs are an effective tool to protect seagrass and coral communities from local disturbances, particularly in mid-lagoon and reef areas, but they do not appear to protect the shallow intertidal seagrass beds (Paper III), possibly because of MPA-related tourism activities. This highlights the need for more detailed MPA evaluations, but also the need for more holistic conservation approaches, like integrated coastal zone management. At the time of the doctoral defense, the following papers were unpublished and had a status as follows: Paper 1: Manuscript. Paper 3: Manuscript. Paper 4: Manuscript.

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    Authors: Malene G. Ulrik; José Martin Pujolar; Anne-Laure Ferchaud; Magnus W. Jacobsen; +7 Authors

    Background: The two North Atlantic eel species, the European and the American eel, represent an ideal system in which to study parallel selection patterns due to their sister species status and the presence of ongoing gene flow. A panel of 80 coding-gene SNPs previously analyzed in American eel was used to genotype European eel individuals (glass eels) from 8 sampling locations across the species distribution. We tested for single-generation signatures of spatially varying selection in European eel by searching for elevated genetic differentiation using F ST-based outlier tests and by testing for significant associations between allele frequencies and environmental variables. Results: We found signatures of possible selection at a total of 11 coding-gene SNPs. Candidate genes for local selection constituted mainly genes with a major role in metabolism as well as defense genes. Contrary to what has been found for American eel, only 2 SNPs in our study correlated with differences in temperature, which suggests that other explanatory variables may play a role. None of the genes found to be associated with explanatory variables in European eel showed any correlations with environmental factors in the previous study in American eel. Conclusions: The different signatures of selection between species could be due to distinct selective pressures associated with the much longer larval migration for European eel relative to American eel. The lack of parallel selection in North Atlantic eels could also be due to most phenotypic traits being polygenic, thus reducing the likelihood of selection acting on the same genes in both species. International audience

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    BMC Evolutionary Biology
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      BMC Evolutionary Biology
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    Authors: Björnerås, C.; Weyhenmeyer, Gesa A.; Evans, C. D.; Gessner, M. O.; +17 Authors

    AbstractRecent reports of increasing iron (Fe) concentrations in freshwaters are of concern, given the fundamental role of Fe in biogeochemical processes. Still, little is known about the frequency and geographical distribution of Fe trends or about the underlying drivers. We analyzed temporal trends of Fe concentrations across 340 water bodies distributed over 10 countries in northern Europe and North America in order to gain a clearer understanding of where, to what extent, and why Fe concentrations are on the rise. We found that Fe concentrations have significantly increased in 28% of sites, and decreased in 4%, with most positive trends located in northern Europe. Regions with rising Fe concentrations tend to coincide with those with organic carbon (OC) increases. Fe and OC increases may not be directly mechanistically linked, but may nevertheless be responding to common regional‐scale drivers such as declining sulfur deposition or hydrological changes. A role of hydrological factors was supported by covarying trends in Fe and dissolved silica, as these elements tend to stem from similar soil depths. A positive relationship between Fe increases and conifer cover suggests that changing land use and expanded forestry could have contributed to enhanced Fe export, although increases were also observed in nonforested areas. We conclude that the phenomenon of increasing Fe concentrations is widespread, especially in northern Europe, with potentially significant implications for wider ecosystem biogeochemistry, and for the current browning of freshwaters.

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    Global Biogeochemical Cycles
    Article . 2017 . Peer-reviewed
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    Data sources: Sygma; Crossref
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      Global Biogeochemical Cycles
      Article . 2017 . Peer-reviewed
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      Data sources: Sygma; Crossref
      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
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