• European Marine Science
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The rewetting of drained peatlands alters peat geochemistry and often leads to sustained elevated methane emission. Although this methane is produced entirely by microbial activity, the distribution and abundance of methane-cycling microbes in rewetted peatlands, especially in fens, is rarely described. In this study, we compare the community composition and abundance of methane-cycling microbes in relation to peat porewater geochemistry in two rewetted fens in northeastern Germany, a coastal brackish fen and a freshwater riparian fen, with known high methane fluxes. We utilized 16S rRNA high-throughput sequencing and quantitative polymerase chain reaction (qPCR) on 16S rRNA, mcrA, and pmoA genes to determine microbial community composition and the abundance of total bacteria, methanogens, and methanotrophs. Electrical conductivity (EC) was more than 3 times higher in the coastal fen than in the riparian fen, averaging 5.3 and 1.5 mS cm−1, respectively. Porewater concentrations of terminal electron acceptors (TEAs) varied within and among the fens. This was also reflected in similarly high intra- and inter-site variations of microbial community composition. Despite these differences in environmental conditions and electron acceptor availability, we found a low abundance of methanotrophs and a high abundance of methanogens, represented in particular by Methanosaetaceae, in both fens. This suggests that rapid (re)establishment of methanogens and slow (re)establishment of methanotrophs contributes to prolonged increased methane emissions following rewetting.

Both atmospheric deposition and benthic remineralisation influence the marine nitrogen cycle, and hence ultimately also marine primary production. The biological and biogeochemical relations in the eastern tropical South Pacific (ETSP) among nitrogen deposition, benthic denitrification and phosphorus regeneration are analysed in a prognostic box model of the oxygen, nitrogen and phosphorus cycles in the ETSP. Atmospheric nitrogen deposition ( ≈ 1.5 Tg N yr−1 for the years 2000–2009) is offset by half in the model by reduced N2 fixation, with the other half transported out of the model domain. Model- and data-based benthic denitrification in our model domain are responsible for losses of 0.19 and 1.0 Tg Tg N yr−1, respectively, and both trigger nitrogen fixation, partly compensating for the NO3− loss. Model- and data-based estimates of enhanced phosphate release via sedimentary phosphorus regeneration under suboxic conditions are 0.062 and 0.11 Tg N yr−1, respectively. Since phosphate is the ultimate limiting nutrient in the model, even very small additional phosphate inputs stimulate primary production and subsequent export production and NO3− loss in the oxygen minimum zone (OMZ). A sensitivity analysis of the local response to both atmospheric deposition and benthic remineralisation indicates dominant stabilising feedbacks in the ETSP, which tend to keep a balanced nitrogen inventory; i.e. nitrogen input by atmospheric deposition is counteracted by decreasing nitrogen fixation; NO3− loss via benthic denitrification is partly compensated for by increased nitrogen fixation; enhanced nitrogen fixation stimulated by phosphate regeneration is partly counteracted by stronger water-column denitrification. Even though the water column in our model domain acts as a NO3− source, the ETSP including benthic denitrification might be a NO3− sink.

Rhodoliths are free-living calcifying red algae that form extensive beds in shallow marine benthic environments (<250 m), which provide important habitats and nurseries for marine organisms and contribute to carbonate sediment accumulation. There is growing concern that these organisms are sensitive to global climate change, yet little is known about their physiology. Considering their broad distribution along most continental coastlines, their potential sensitivity to global change could have important consequences for the productivity and diversity of benthic coastal environments. The goal of this study was to determine the plasticity of carbon-concentrating mechanisms (CCMs) of rhodoliths along a latitudinal gradient in the northeast Atlantic using natural stable isotope signatures. The δ13C signature of macroalgae can be used to provide an indication of the preferred inorganic carbon source (CO2 vs. HCO3-). Here we present the total (δ13CT) and organic (δ13Corg) δ13C signatures of northeast Atlantic rhodoliths with respect to changing environmental conditions along a latitudinal gradient from the Canary Islands to Spitsbergen. The δ13CT signatures (−11.9 to −0.89) of rhodoliths analyzed in this study were generally higher than the δ13Corg signatures, which ranged from −25.7 to −2.8. We observed a decreasing trend in δ13CT signatures with increasing latitude and temperature, while δ13Corg signatures were only significantly correlated to dissolved inorganic carbon. These data suggest that high-latitude rhodoliths rely more on CO2 as an inorganic carbon source, while low-latitude rhodoliths likely take up HCO3- directly, but none of our specimens had ∂13Corg signatures less than −30, suggesting that none of them relied solely on diffusive CO2 uptake. However, depth also has a significant effect on both skeletal and organic δ13C signatures, suggesting that both local and latitudinal trends influence the plasticity of rhodolith inorganic carbon acquisition and assimilation. Our results show that many species, particularly those at lower latitudes, have CCMs that facilitate HCO3- use for photosynthesis. This is an important adaptation for marine macroalgae, because HCO3- is available at higher concentrations than CO2 in seawater, and this becomes even more extreme with increasing temperature. The flexibility of CCMs in northeast Atlantic rhodoliths observed in our study may provide a key physiological mechanism for potential adaptation of rhodoliths to future global climate change.

Abstract. This study highlights recent advances and challenges of applying coupled physical-biogeochemical modeling for investigating the distribution of the key phytoplankton groups in the Southern Ocean, an area of strong interest for understanding biogeochemical cycling and ecosystem functioning under present climate change. Our simulations of the phenology of various Phytoplankton Functional Types (PFTs) are based on a version of the Darwin biogeochemical model coupled to the Massachusetts Institute of Technology (MIT) general circulation model (Darwin-MITgcm). The ecological module version was adapted for the Southern Ocean by: 1) improving coccolithophores abundance relative to the original model by introducing a high affinity for nutrients and an ability to escape grazing control for coccolithophores; 2) including two different (small vs. large) size classes of diatoms; and 3) accounting for two distinct life stages for Phaeocystis (single cell vs. colonial). This new model configuration describes best the competition and co-occurrence of the PFTs in the Southern Ocean. It improves significantly relative to an older version the agreement of the simulated abundance of the coccolithophores and diatoms with in situ scanning electron microscopy observations in the Subantarctic Zone as well as with in situ diatoms and haptophytes (including coccolithophores and Phaeocystis) chlorophyll a concentrations within the Patagonian Shelf and along the Western Antarctic Peninsula obtained by diagnostic pigment analysis. The modeled Southern Ocean PFT dominance also agrees well with satellite-based PFT information.

This study presents culture experiments of the cold water species Neogloboquadrina pachyderma (sinistral) and provides new insights into the incorporation of elements in foraminiferal calcite of common and newly established proxies for paleoenvironmental applications (shell Mg/Ca, Sr/Ca and Na/Ca). Specimens were collected from sea ice during the austral winter in the Antarctic Weddell Sea and subsequently cultured at different salinities and a constant temperature. Incorporation of the fluorescent dye calcein showed new chamber formation in the culture at salinities of 30, 31, and 69. Cultured foraminifers at salinities of 46 to 83 only revealed chamber wall thickening, indicated by the fluorescence of the whole shell. Signs of reproduction and the associated gametogenic calcite were not observed in any of the culture experiments. Trace element analyses were performed using an electron microprobe, which revealed increased shell Mg/Ca, Sr/Ca, and Na/Ca values at higher salinities, with Mg/Ca showing the lowest sensitivity to salinity changes. This study enhances the knowledge about unusually high element concentrations in foraminifera shells from high latitudes. Neogloboquadrina pachyderma appears to be able to calcify in the Antarctic sea ice within brine channels, which have low temperatures and exceptionally high salinities due to ongoing sea ice formation. GEOMAR Helmholtz-Zentrum für Ozeanforschung Kiel http://dx.doi.org/10.13039/501100003153 Deutsche Forschungsgemeinschaft http://dx.doi.org/10.13039/501100001659

An extensive compilation of published neodymium (Nd) concentrations and isotopic compositions (Nd IC) was realized in order to establish a new database and a map (using a high-resolution geological map of the area) of the distribution of these parameters for all the Mediterranean margins. Data were extracted from different kinds of samples: river solid discharge deposited on the shelf, sedimentary material collected on the margin or geological material outcropping above or close to a margin. Additional analyses of surface sediments were done in order to improve this data set in key areas (e.g. Sicilian strait). The Mediterranean margin Nd isotopic signatures vary from non-radiogenic values around the Gulf of Lion, (ε Nd values ∼ −11) to radiogenic values around the Aegean and the Levantine sub-basins up to +6. Using a high-resolution regional oceanic model (1/12 • of horizontal-resolution), ε Nd distribution was simulated for the first time in the Mediterranean Sea. The high resolution of the model provides a unique opportunity to represent a realistic thermohaline circulation in the basin and thus apprehend the processes governing the Nd isotope distribution in the marine environment. Results are consistent with the preceding conclusions on boundary exchange (BE) as an important process in the Nd oceanic cycle. Nevertheless this approach simulates a too-radiogenic value in the Mediterranean Sea; this bias will likely be corrected once the dust and river inputs will be included in the model. This work highlights that a significant interannual variability of ε Nd distribution in seawater could occur. In particular , important hydrological events such as the Eastern Mediterranean Transient (EMT), associated with deep water formed in the Aegean sub-basin, could induce a shift in ε Nd at deep/intermediate depths that could be noticeable in the eastern part of the basin. This underlines that the temporal and geographical variations of ε Nd could represent an interesting insight of Nd as tracer of the Mediterranean Sea circulation , in particular in the context of palaeo-oceanographic applications. International audience