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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Joël Aubin; Myriam D. Callier; Hélène Rey-Valette; Syndhia Mathé; +14 Authors

    Ecological intensification is a new concept in agriculture that addresses the double challenge of maintaining a level of production sufficient to support needs of human populations and respecting the environment in order to conserve the natural world and human quality of life. This article adapts this concept to fish farming using agroecological principles and the ecosystem services framework. The method was developed from the study of published literature and applications at four study sites chosen for their differences in production intensity: polyculture ponds in France, integrated pig and pond polyculture in Brazil, the culture of striped catfish in Indonesia and a recirculating salmon aquaculture system in France. The study of stakeholders' perceptions of ecosystem services combined with environmental assessment through Life Cycle Assessment and Emergy accounting allowed development of an assessment tool that was used as a basis for co-building evolution scenarios. From this experience, ecological intensifica-tion of aquaculture was defined as the use of ecological processes and functions to increase productivity, strengthen ecosystem services and decrease disservices. It is based on aquaecosystem and biodiversity management and the use of local and traditional knowledge. Expected consequences for farming systems consist of greater autonomy, efficiency and better integration into their surrounding territories. Ecological intensification requires territorial governance and helps improve it from a sustainable development perspective. International audience

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Mémoires en Sciences...arrow_drop_down
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    Horizon / Pleins textes
    Other literature type . 2019
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    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    Reviews in Aquaculture
    Article . 2017 . Peer-reviewed
    License: Wiley Online Library User Agreement
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    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    Agritrop
    Article . 2019
    Data sources: Agritrop
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Jorge Alvarez-Solas; Rubén Banderas; Alexander Robinson; Marisa Montoya;

    Abstract. The last glacial period (LGP; ca. 110–10 kyr BP) was marked by the existence of two types of abrupt climatic changes, Dansgaard–Oeschger (DO) and Heinrich (H) events. Although the mechanisms behind these are not fully understood, it is generally accepted that the presence of ice sheets played an important role in their occurrence. While an important effort has been made to investigate the dynamics and evolution of the Laurentide ice sheet (LIS) during this period, the Eurasian ice sheet (EIS) has not received much attention, in particular from a modeling perspective. However, meltwater discharge from this and other ice sheets surrounding the Nordic seas is often implied as a potential cause of ocean instabilities that lead to glacial abrupt climate changes. Thus, a better comprehension of the evolution of the EIS during the LGP is important to understand its role in glacial abrupt climate changes. Here we investigate the response of the EIS to millennial-scale climate variability during the LGP. We use a hybrid, three-dimensional, thermomechanical ice-sheet model that includes ice shelves and ice streams. The model is forced off-line via a novel perturbative approach that, as opposed to conventional methods, clearly differentiates between the spatial patterns of millennial-scale and orbital-scale climate variability. Thus, it provides a more realistic treatment of the forcing at millennial timescales. The effect of both atmospheric and oceanic variations are included. Our results show that the EIS responds with enhanced ice discharge in phase with interstadial warming in the North Atlantic when forced with surface ocean temperatures. Conversely, when subsurface ocean temperatures are used, enhanced ice discharge occurs both during stadials and at the beginning of the interstadials. Separating the atmospheric and oceanic effects demonstrates the major role of the ocean in controlling the dynamics of the EIS on millennial timescales. While the atmospheric forcing alone is only able to produce modest iceberg discharges, warming of the ocean leads to higher rates of iceberg discharges as a result of relatively strong basal melting at the margins of the ice sheet. Our results clearly show the capability of the EIS to react to glacial abrupt climate changes, and highlight the need for stronger constraints on the ice sheet's glacial dynamics and climate–ocean interactions.

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    Climate of the Past
    Article . 2019
    Data sources: DOAJ-Articles
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    Climate of the Past (CP)
    Article . 2019 . Peer-reviewed
    License: CC BY
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    DOAJ
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    Climate of the Past (CP)
    Article
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    Copernicus Publications
    Other literature type . 2019
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      Climate of the Past
      Article . 2019
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      Climate of the Past (CP)
      Article . 2019 . Peer-reviewed
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      Climate of the Past (CP)
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      Other literature type . 2019
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Lafond, Augustin; Leblanc, Karine; Legras, Justine; Cornet, Veronique; +1 Authors

    In the context of climate change, understanding the ecological processes controlling the functioning and the efficiency of the biological pump is of primary importance. Plankton community structure and species-specific properties are often invoked as likely to affect biogeochemistry and the export of organic and biogenic mate- rial to the ocean interior. Although a major player in this respect, diatoms are still viewed as a single functional type whose diversity is generally overlooked. Here we examine that question, building on the results achieved during the MOBYDICK expedition, which occurred in the vicinity of the Kerguelen Islands (Southern Ocean) in late summer, a time window corresponding to the demise of the annually recurrent phytoplankton blooms already known to be controlled by iron availability. The Si/C/N stoichiometry of the particulate matter was studied in conjunction with the different diatom community structures, their physiological states, as well as their species-specific carbon contents and silicification degrees. Our results show that diatoms outside the iron- fertilized plateau were more heavily silicified, due to the combined effects of both taxonomic composition of the resident community and a direct physiological response to iron stress, resulting in higher Si:C elemental ratios in diatoms as well as in the bulk particulate matter. Despite low silicic acid concentrations, large chains of weakly silicified Corethron inerme were able to grow in the upper mixed layer above the plateau, while in adjacent high nutrient low chlorophyll (HNLC) waters, communities were dominated by Fragilariopsis spp., Cylindrotheca closterium and the centric genera Actinocyclus/Thalassiosira spp. Depth was also an important factor shaping diatom communities, with the presence of a deep and inactive assemblage located within the pycnocline gradient, both on- and off-plateau, which likely resulted from the differential sinking and accumulation of species previously grown at the surface. In HNLC waters, below the mixed layer, detrital frustules of the heavily silicified species Fragilariopsis kerguelensis carried mostly Si, while above the plateau, Eucampia antarctica and Chaetoceros spp. (resting spores and vegetative stages) were efficient vectors of both Si and C to the deeper layers. Our study shows that the stoichiometry of the biological pump cannot be considered solely as a simple response to a single limiting factor (here iron) highlighting the importance of a species-centered approach in order to finely resolve biogeochemical fluxes and improve our understanding of the biological pump. International audience

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    Journal of Marine Systems
    Article . 2020 . Peer-reviewed
    License: Elsevier TDM
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    Authors: W. Rush; W. Rush; J. Self-Trail; Y. Zhang; +8 Authors

    Eocene transient global warming events (hyperthermals) can provide insight into a future warmer world. While much research has focused on the Paleocene–Eocene Thermal Maximum (PETM), hyperthermals of a smaller magnitude can be used to characterize climatic responses over different magnitudes of forcing. This study identifies two events, namely the Eocene Thermal Maximum 2 (ETM2 and H2), in shallow marine sediments of the Eocene-aged Salisbury Embayment of Maryland, based on magnetostratigraphy, calcareous nannofossil, and dinocyst biostratigraphy, as well as the recognition of negative stable carbon isotope excursions (CIEs) in biogenic calcite. We assess local environmental change in the Salisbury Embayment, utilizing clay mineralogy, marine palynology, δ18O of biogenic calcite, and biomarker paleothermometry (TEX86). Paleotemperature proxies show broad agreement between surface water and bottom water temperature changes. However, the timing of the warming does not correspond to the CIE of the ETM2 as expected from other records, and the highest values are observed during H2, suggesting factors in addition to pCO2 forcing have influenced temperature changes in the region. The ETM2 interval exhibits a shift in clay mineralogy from smectite-dominated facies to illite-rich facies, suggesting hydroclimatic changes but with a rather dampened weathering response relative to that of the PETM in the same region. Organic walled dinoflagellate cyst assemblages show large fluctuations throughout the studied section, none of which seem systematically related to CIE warming. These observations are contrary to the typical tight correspondence between climate change and assemblages across the PETM, regionally and globally, and ETM2 in the Arctic Ocean. The data do indicate very warm and (seasonally) stratified conditions, likely salinity-driven, across H2. The absence of evidence for strong perturbations in local hydrology and nutrient supply during ETM2 and H2, compared to the PETM, is consistent with the less extreme forcing and the warmer pre-event baseline, as well as the non-linear response in hydroclimates to greenhouse forcing.

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    Copernicus Publications
    Other literature type . 2023
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    NIOZ Repository
    Article . 2023
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    Climate of the Past
    Article . 2023
    Data sources: DOAJ
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    https://doi.org/10.5194/egusph...
    Preprint . 2023 . Peer-reviewed
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    Climate of the Past (CP)
    Article . 2023 . Peer-reviewed
    License: CC BY
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      Copernicus Publications
      Other literature type . 2023
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      NIOZ Repository
      Article . 2023
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      Climate of the Past
      Article . 2023
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      Preprint . 2023 . Peer-reviewed
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      Climate of the Past (CP)
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    Authors: Iudicone, Daniele; Madec, Gurvan; Blanke, Bruno; Speich, Sabrina;

    Despite the renewed interest in the Southern Ocean, there are yet many unknowns because of the scarcity of measurements and the complexity of the thermohaline circulation. Hence the authors present here the analysis of the thermohaline circulation of the Southern Ocean of a steady-state simulation of a coupled ice–ocean model. The study aims to clarify the roles of surface fluxes and internal mixing, with focus on the mechanisms of the upper branch of the overturning. A quantitative dynamical analysis of the water-mass transformation has been performed using a new method. Surface fluxes, including the effect of the penetrative solar radiation, produce almost 40 Sv (1 Sv ≡ 106 m3 s-1) of Subantarctic Mode Water while about 5 Sv of the densest water masses (γ > 28.2) are formed by brine rejection on the shelves of Antarctica and in the Weddell Sea. Mixing transforms one-half of the Subantarctic Mode Water into intermediate water and Upper Circumpolar Deep Water while bottom water is produced by Lower Circumpolar Deep Water and North Atlantic Deep Water mixing with shelf water. The upwelling of part of the North Atlantic Deep Water inflow is due to internal processes, mainly downward propagation of the surface freshwater excess via vertical mixing at the base of the mixed layer. A complementary Lagrangian analysis of the thermohaline circulation will be presented in a companion paper. International audience

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    Journal of Physical Oceanography
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    Journal of Physical Oceanography
    Article . 2008 . Peer-reviewed
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    Authors: Quéré, Gaëlle; Meistertzheim, Anne-Leila; Steneck, Robert S., R. S.; Nugues, Maggy M.;

    Crustose coralline algae (CCA) are major benthic calcifiers that play crucial roles in marine ecosystems, particularly coral reefs. Over the past two decades, epizootics have been reported for several CCA species on coral reefs worldwide. However, their causes remain often unknown in part because few studies have investigated CCA pathologies at a microscopic scale. We studied the cellular changes associated with two syndromes: Coralline White Band Syndrome (CWBS) and Coralline White Patch Disease (CWPD) from samples collected in Curaçao , southern Caribbean. Healthy-looking tissue of diseased CCA did not differ from healthy tissue of healthy CCA. In diseased tissues of both pathologies, the three characteristic cell layers of CCA revealed cells completely depleted of protoplasmic content, but presenting an intact cell wall. In addition, CWBS showed a transition area between healthy and diseased tissues consisting of cells partially deprived of protoplasmic material, most likely corresponding to the white band characterizing the disease at the macroscopic level. This transition area was absent in CWPD. Regrowth at the lesion boundary were sometimes observed in both syndromes. Tissues of both healthy and diseased CCA were colonised by diverse boring organisms. Fungal infections associated with the diseased cells were not seen. However, other bioeroders were more abundant in diseased vs healthy CCA and in diseased vs healthy-looking tissues of diseased CCA. Although their role in the pathogenesis is unclear, this suggests that disease increases CCA susceptibility to bioerosion. Further investigations using an integrated approach are needed to carry out the complete diagnosis of these diseases. International audience

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    DOAJ
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    Authors: Marta Szulkin; Pierre-Alexandre Gagnaire; Nicolas Bierne; Anne Charmantier;

    AbstractLinking population genetic variation to the spatial heterogeneity of the environment is of fundamental interest to evolutionary biology and ecology, in particular when phenotypic differences between populations are observed at biologically small spatial scales. Here, we applied restriction‐site associated DNA sequencing (RAD‐Seq) to test whether phenotypically differentiated populations of wild blue tits (Cyanistes caeruleus) breeding in a highly heterogeneous environment exhibit genetic structure related to habitat type. Using 12 106 SNPs in 197 individuals from deciduous and evergreen oak woodlands, we applied complementary population genomic analyses, which revealed that genetic variation is influenced by both geographical distance and habitat type. A fine‐scale genetic differentiation supported by genome‐ and transcriptome‐wide analyses was found within Corsica, between two adjacent habitats where blue tits exhibit marked differences in breeding time while nesting < 6 km apart. Using redundancy analysis (RDA), we show that genomic variation remains associated with habitat type when controlling for spatial and temporal effects. Finally, our results suggest that the observed patterns of genomic differentiation were not driven by a small proportion of highly differentiated loci, but rather emerged through a process such as habitat choice, which reduces gene flow between habitats across the entire genome. The pattern of genomic isolation‐by‐environment closely matches differentiation observed at the phenotypic level, thereby offering significant potential for future inference of phenotype‐genotype associations in a heterogeneous environment.

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    Molecular Ecology
    Article . 2016 . Peer-reviewed
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      Molecular Ecology
      Article . 2016 . Peer-reviewed
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    Authors: Alexandre Supply; Jacqueline Boutin; Jean-Luc Vergely; Nicolas Kolodziejczyk; +3 Authors

    Since 2010, the Soil Moisture and Ocean Salinity (SMOS) satellite mission monitors the earth emission at L-Band. It provides the longest time series of Sea Surface Salinity (SSS) from space over the global ocean. However, the SSS retrieval at high latitudes is a challenge because of the low sensitivity L-Band radiometric measurements to SSS in cold waters and to the contamination of SMOS measurements by the vicinity of continents, of sea ice and of Radio Frequency Interferences. In this paper, we assess the quality of weekly SSS fields derived from swath-ordered instantaneous SMOS SSS (so called Level 2) distributed by the European Space Agency. These products are filtered according to new criteria. We use the pseudo-dielectric constant retrieved from SMOS brightness temperatures to filter SSS pixels polluted by sea ice. We identify that the dielectric constant model and the sea surface temperature auxiliary parameter used as prior information in the SMOS SSS retrieval induce significant systematic errors at low temperatures. We propose a novel empirical correction to mitigate those sources of errors at high latitudes.Comparisons with in-situ measurements ranging from 1 to 11 m depths spotlight huge vertical stratification in fresh regions. This emphasizes the need to consider in-situ salinity as close as possible to the sea surface when validating L-band radiometric SSS which are representative of the first top centimeter.SSS Standard deviation of differences (STDD) between weekly SMOS SSS and in-situ near surface salinity significantly decrease after applying the SSS correction, from 1.46 pss to 1.28 pss. The correlation between new SMOS SSS and in-situ near surface salinity reaches 0.94. SMOS estimates better capture SSS variability in the Arctic Ocean in comparison to TOPAZ reanalysis (STDD between TOPAZ and in-situ SSS = 1.86 pss), particularly in river plumes with very large SSS spatial gradients. International audience

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    OceanRep
    Article . 2020 . Peer-reviewed
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    Remote Sensing of Environment
    Article . 2020 . Peer-reviewed
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      Remote Sensing of Environment
      Article . 2020 . Peer-reviewed
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    Authors: Khassoum Correa; Eric Machu; Julien Brajard; Daouda Diouf; +2 Authors

    The Sahara desert is a major global source of dust that is mostly transported southwest over the ocean off West Africa. The presence of this dust impacts the remote sensing of ocean surface properties. These aerosols have absorbing properties that are poorly accounted for in the standard ocean color data processing algorithm. This can result in an overestimation of the atmospheric contribution to the ocean color signal and consequently an underestimation of the oceanic contribution. A two-step algorithm initially applied to the Sea-viewing Wide field-of-view Sensor (SeaWiFS) data was adapted to the Moderate Resolution Imaging Spectroradiometer (MODIS-Aqua) sensor in the Northwest African region. The Northwest African region is a very productive region, where pelagic resources are an important socio-economic sector. Improving atmospheric correction of ocean color products is, thus, of particular interest for this oceanic region. The two-step approach of classifying the top-of-atmosphere radiance spectra for a better estimate of aerosol type on the one hand, and using an optimization method to fit the parameters of these aerosols and chlorophyll-a concentration (Chla) on the other hand, allows for a better representation of the optical thickness, a correction of the marine reflectance spectrum, and an increase in the spatio-temporal coverage of the area. To the extent that the properties of the water color signal are improved by this data processing, the Chla estimates should also be improved by this approach. However, it is difficult to conclude on this point from the available in situ observations. International audience WOS:001038809300001

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    Remote Sensing
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    Remote Sensing
    Article . 2023
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      Remote Sensing
      Other literature type . Article . 2023 . Peer-reviewed
      License: CC BY
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      Remote Sensing
      Article . 2023
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    Authors: Marine David; Vincent Bailly-Comte; Dominique Munaron; Annie Fiandrino; +1 Authors

    Near-shore and direct groundwater inputs are frequently omitted from nutrient budgets of coastal lagoons. This study investigated groundwater-driven dissolved inorganic nitrogen (DIN) inputs from an alluvial aquifer to the hypertrophic Or lagoon, with a focus on the Salaison River. Piezometric contours revealed that the Salaison hydrogeological catchment is 42% bigger than the surface watershed and hydraulic gradients suggest significant groundwater discharge all along the stream. Hydrograph separation of the water flow at a gauging station located 3 km upstream from the Or lagoon combined with DIN historical data enabled to estimate that groundwater-driven DIN inputs account for 81–87% of the annual total DIN inputs to the stream upstream from the gauging station. A radon mass balance was performed for the hydrological cycle 2017–2018 to estimate groundwater inflow into the downstream part of the stream. Results showed that (1) DIN fluxes increased by a factor 1.1 to 2.3 between the gauging station and the Salaison outlet, (2) the increase in DIN was due to two groundwater-fed canals and to groundwater discharge along the stream, the latter represented 63–78% of the water flow. This study thus highlights the significance of groundwater driven DIN inputs into the Salaison River, which account for 90% of the annual DIN inputs. This is particularly true in the downstream part of the river, which, on averages, supplies 48% of total DIN inputs to the river. These downstream DIN inputs into the Or lagoon were previously not taken into account in the management of this and other Mediterranean lagoons. The inputs will probably affect restoration processes for many years due to their residence time in the aquifer. This study throws light on a rarely documented source of ‘very-nearshore’ groundwater discharge to coastal streams in water and nutrient budgets of coastal zone ecosystems. International audience

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    The Science of The Total Environment
    Article . 2019 . Peer-reviewed
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      The Science of The Total Environment
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    Authors: Joël Aubin; Myriam D. Callier; Hélène Rey-Valette; Syndhia Mathé; +14 Authors

    Ecological intensification is a new concept in agriculture that addresses the double challenge of maintaining a level of production sufficient to support needs of human populations and respecting the environment in order to conserve the natural world and human quality of life. This article adapts this concept to fish farming using agroecological principles and the ecosystem services framework. The method was developed from the study of published literature and applications at four study sites chosen for their differences in production intensity: polyculture ponds in France, integrated pig and pond polyculture in Brazil, the culture of striped catfish in Indonesia and a recirculating salmon aquaculture system in France. The study of stakeholders' perceptions of ecosystem services combined with environmental assessment through Life Cycle Assessment and Emergy accounting allowed development of an assessment tool that was used as a basis for co-building evolution scenarios. From this experience, ecological intensifica-tion of aquaculture was defined as the use of ecological processes and functions to increase productivity, strengthen ecosystem services and decrease disservices. It is based on aquaecosystem and biodiversity management and the use of local and traditional knowledge. Expected consequences for farming systems consist of greater autonomy, efficiency and better integration into their surrounding territories. Ecological intensification requires territorial governance and helps improve it from a sustainable development perspective. International audience

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    Horizon / Pleins textes
    Other literature type . 2019
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    Reviews in Aquaculture
    Article . 2017 . Peer-reviewed
    License: Wiley Online Library User Agreement
    Data sources: Crossref
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    Agritrop
    Article . 2019
    Data sources: Agritrop
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    Authors: Jorge Alvarez-Solas; Rubén Banderas; Alexander Robinson; Marisa Montoya;

    Abstract. The last glacial period (LGP; ca. 110–10 kyr BP) was marked by the existence of two types of abrupt climatic changes, Dansgaard–Oeschger (DO) and Heinrich (H) events. Although the mechanisms behind these are not fully understood, it is generally accepted that the presence of ice sheets played an important role in their occurrence. While an important effort has been made to investigate the dynamics and evolution of the Laurentide ice sheet (LIS) during this period, the Eurasian ice sheet (EIS) has not received much attention, in particular from a modeling perspective. However, meltwater discharge from this and other ice sheets surrounding the Nordic seas is often implied as a potential cause of ocean instabilities that lead to glacial abrupt climate changes. Thus, a better comprehension of the evolution of the EIS during the LGP is important to understand its role in glacial abrupt climate changes. Here we investigate the response of the EIS to millennial-scale climate variability during the LGP. We use a hybrid, three-dimensional, thermomechanical ice-sheet model that includes ice shelves and ice streams. The model is forced off-line via a novel perturbative approach that, as opposed to conventional methods, clearly differentiates between the spatial patterns of millennial-scale and orbital-scale climate variability. Thus, it provides a more realistic treatment of the forcing at millennial timescales. The effect of both atmospheric and oceanic variations are included. Our results show that the EIS responds with enhanced ice discharge in phase with interstadial warming in the North Atlantic when forced with surface ocean temperatures. Conversely, when subsurface ocean temperatures are used, enhanced ice discharge occurs both during stadials and at the beginning of the interstadials. Separating the atmospheric and oceanic effects demonstrates the major role of the ocean in controlling the dynamics of the EIS on millennial timescales. While the atmospheric forcing alone is only able to produce modest iceberg discharges, warming of the ocean leads to higher rates of iceberg discharges as a result of relatively strong basal melting at the margins of the ice sheet. Our results clearly show the capability of the EIS to react to glacial abrupt climate changes, and highlight the need for stronger constraints on the ice sheet's glacial dynamics and climate–ocean interactions.

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    Climate of the Past
    Article . 2019
    Data sources: DOAJ-Articles
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    Climate of the Past (CP)
    Article . 2019 . Peer-reviewed
    License: CC BY
    Data sources: Crossref
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    Article . 2019
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    Climate of the Past (CP)
    Article
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    Copernicus Publications
    Other literature type . 2019
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      Climate of the Past
      Article . 2019
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      Climate of the Past (CP)
      Article . 2019 . Peer-reviewed
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      Climate of the Past (CP)
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    Authors: Lafond, Augustin; Leblanc, Karine; Legras, Justine; Cornet, Veronique; +1 Authors

    In the context of climate change, understanding the ecological processes controlling the functioning and the efficiency of the biological pump is of primary importance. Plankton community structure and species-specific properties are often invoked as likely to affect biogeochemistry and the export of organic and biogenic mate- rial to the ocean interior. Although a major player in this respect, diatoms are still viewed as a single functional type whose diversity is generally overlooked. Here we examine that question, building on the results achieved during the MOBYDICK expedition, which occurred in the vicinity of the Kerguelen Islands (Southern Ocean) in late summer, a time window corresponding to the demise of the annually recurrent phytoplankton blooms already known to be controlled by iron availability. The Si/C/N stoichiometry of the particulate matter was studied in conjunction with the different diatom community structures, their physiological states, as well as their species-specific carbon contents and silicification degrees. Our results show that diatoms outside the iron- fertilized plateau were more heavily silicified, due to the combined effects of both taxonomic composition of the resident community and a direct physiological response to iron stress, resulting in higher Si:C elemental ratios in diatoms as well as in the bulk particulate matter. Despite low silicic acid concentrations, large chains of weakly silicified Corethron inerme were able to grow in the upper mixed layer above the plateau, while in adjacent high nutrient low chlorophyll (HNLC) waters, communities were dominated by Fragilariopsis spp., Cylindrotheca closterium and the centric genera Actinocyclus/Thalassiosira spp. Depth was also an important factor shaping diatom communities, with the presence of a deep and inactive assemblage located within the pycnocline gradient, both on- and off-plateau, which likely resulted from the differential sinking and accumulation of species previously grown at the surface. In HNLC waters, below the mixed layer, detrital frustules of the heavily silicified species Fragilariopsis kerguelensis carried mostly Si, while above the plateau, Eucampia antarctica and Chaetoceros spp. (resting spores and vegetative stages) were efficient vectors of both Si and C to the deeper layers. Our study shows that the stoichiometry of the biological pump cannot be considered solely as a simple response to a single limiting factor (here iron) highlighting the importance of a species-centered approach in order to finely resolve biogeochemical fluxes and improve our understanding of the biological pump. International audience

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    Journal of Marine Systems
    Article . 2020 . Peer-reviewed
    License: Elsevier TDM
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    Authors: W. Rush; W. Rush; J. Self-Trail; Y. Zhang; +8 Authors

    Eocene transient global warming events (hyperthermals) can provide insight into a future warmer world. While much research has focused on the Paleocene–Eocene Thermal Maximum (PETM), hyperthermals of a smaller magnitude can be used to characterize climatic responses over different magnitudes of forcing. This study identifies two events, namely the Eocene Thermal Maximum 2 (ETM2 and H2), in shallow marine sediments of the Eocene-aged Salisbury Embayment of Maryland, based on magnetostratigraphy, calcareous nannofossil, and dinocyst biostratigraphy, as well as the recognition of negative stable carbon isotope excursions (CIEs) in biogenic calcite. We assess local environmental change in the Salisbury Embayment, utilizing clay mineralogy, marine palynology, δ18O of biogenic calcite, and biomarker paleothermometry (TEX86). Paleotemperature proxies show broad agreement between surface water and bottom water temperature changes. However, the timing of the warming does not correspond to the CIE of the ETM2 as expected from other records, and the highest values are observed during H2, suggesting factors in addition to pCO2 forcing have influenced temperature changes in the region. The ETM2 interval exhibits a shift in clay mineralogy from smectite-dominated facies to illite-rich facies, suggesting hydroclimatic changes but with a rather dampened weathering response relative to that of the PETM in the same region. Organic walled dinoflagellate cyst assemblages show large fluctuations throughout the studied section, none of which seem systematically related to CIE warming. These observations are contrary to the typical tight correspondence between climate change and assemblages across the PETM, regionally and globally, and ETM2 in the Arctic Ocean. The data do indicate very warm and (seasonally) stratified conditions, likely salinity-driven, across H2. The absence of evidence for strong perturbations in local hydrology and nutrient supply during ETM2 and H2, compared to the PETM, is consistent with the less extreme forcing and the warmer pre-event baseline, as well as the non-linear response in hydroclimates to greenhouse forcing.

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    Copernicus Publications
    Other literature type . 2023
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    NIOZ Repository
    Article . 2023
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    Climate of the Past
    Article . 2023
    Data sources: DOAJ
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    https://doi.org/10.5194/egusph...
    Preprint . 2023 . Peer-reviewed
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    Climate of the Past (CP)
    Article . 2023 . Peer-reviewed
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      Copernicus Publications
      Other literature type . 2023
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      NIOZ Repository
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      Climate of the Past
      Article . 2023
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      https://doi.org/10.5194/egusph...
      Preprint . 2023 . Peer-reviewed
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      Climate of the Past (CP)
      Article . 2023 . Peer-reviewed
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    Authors: Iudicone, Daniele; Madec, Gurvan; Blanke, Bruno; Speich, Sabrina;

    Despite the renewed interest in the Southern Ocean, there are yet many unknowns because of the scarcity of measurements and the complexity of the thermohaline circulation. Hence the authors present here the analysis of the thermohaline circulation of the Southern Ocean of a steady-state simulation of a coupled ice–ocean model. The study aims to clarify the roles of surface fluxes and internal mixing, with focus on the mechanisms of the upper branch of the overturning. A quantitative dynamical analysis of the water-mass transformation has been performed using a new method. Surface fluxes, including the effect of the penetrative solar radiation, produce almost 40 Sv (1 Sv ≡ 106 m3 s-1) of Subantarctic Mode Water while about 5 Sv of the densest water masses (γ > 28.2) are formed by brine rejection on the shelves of Antarctica and in the Weddell Sea. Mixing transforms one-half of the Subantarctic Mode Water into intermediate water and Upper Circumpolar Deep Water while bottom water is produced by Lower Circumpolar Deep Water and North Atlantic Deep Water mixing with shelf water. The upwelling of part of the North Atlantic Deep Water inflow is due to internal processes, mainly downward propagation of the surface freshwater excess via vertical mixing at the base of the mixed layer. A complementary Lagrangian analysis of the thermohaline circulation will be presented in a companion paper. International audience

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    Journal of Physical Oceanography
    Article
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    Journal of Physical Oceanography
    Article . 2008 . Peer-reviewed
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    Authors: Quéré, Gaëlle; Meistertzheim, Anne-Leila; Steneck, Robert S., R. S.; Nugues, Maggy M.;

    Crustose coralline algae (CCA) are major benthic calcifiers that play crucial roles in marine ecosystems, particularly coral reefs. Over the past two decades, epizootics have been reported for several CCA species on coral reefs worldwide. However, their causes remain often unknown in part because few studies have investigated CCA pathologies at a microscopic scale. We studied the cellular changes associated with two syndromes: Coralline White Band Syndrome (CWBS) and Coralline White Patch Disease (CWPD) from samples collected in Curaçao , southern Caribbean. Healthy-looking tissue of diseased CCA did not differ from healthy tissue of healthy CCA. In diseased tissues of both pathologies, the three characteristic cell layers of CCA revealed cells completely depleted of protoplasmic content, but presenting an intact cell wall. In addition, CWBS showed a transition area between healthy and diseased tissues consisting of cells partially deprived of protoplasmic material, most likely corresponding to the white band characterizing the disease at the macroscopic level. This transition area was absent in CWPD. Regrowth at the lesion boundary were sometimes observed in both syndromes. Tissues of both healthy and diseased CCA were colonised by diverse boring organisms. Fungal infections associated with the diseased cells were not seen. However, other bioeroders were more abundant in diseased vs healthy CCA and in diseased vs healthy-looking tissues of diseased CCA. Although their role in the pathogenesis is unclear, this suggests that disease increases CCA susceptibility to bioerosion. Further investigations using an integrated approach are needed to carry out the complete diagnosis of these diseases. International audience

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    DOAJ
    Article . 2015
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    Authors: Marta Szulkin; Pierre-Alexandre Gagnaire; Nicolas Bierne; Anne Charmantier;

    AbstractLinking population genetic variation to the spatial heterogeneity of the environment is of fundamental interest to evolutionary biology and ecology, in particular when phenotypic differences between populations are observed at biologically small spatial scales. Here, we applied restriction‐site associated DNA sequencing (RAD‐Seq) to test whether phenotypically differentiated populations of wild blue tits (Cyanistes caeruleus) breeding in a highly heterogeneous environment exhibit genetic structure related to habitat type. Using 12 106 SNPs in 197 individuals from deciduous and evergreen oak woodlands, we applied complementary population genomic analyses, which revealed that genetic variation is influenced by both geographical distance and habitat type. A fine‐scale genetic differentiation supported by genome‐ and transcriptome‐wide analyses was found within Corsica, between two adjacent habitats where blue tits exhibit marked differences in breeding time while nesting < 6 km apart. Using redundancy analysis (RDA), we show that genomic variation remains associated with habitat type when controlling for spatial and temporal effects. Finally, our results suggest that the observed patterns of genomic differentiation were not driven by a small proportion of highly differentiated loci, but rather emerged through a process such as habitat choice, which reduces gene flow between habitats across the entire genome. The pattern of genomic isolation‐by‐environment closely matches differentiation observed at the phenotypic level, thereby offering significant potential for future inference of phenotype‐genotype associations in a heterogeneous environment.

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    Molecular Ecology
    Article . 2016 . Peer-reviewed
    License: Wiley Online Library User Agreement
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      Molecular Ecology
      Article . 2016 . Peer-reviewed
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    Authors: Alexandre Supply; Jacqueline Boutin; Jean-Luc Vergely; Nicolas Kolodziejczyk; +3 Authors

    Since 2010, the Soil Moisture and Ocean Salinity (SMOS) satellite mission monitors the earth emission at L-Band. It provides the longest time series of Sea Surface Salinity (SSS) from space over the global ocean. However, the SSS retrieval at high latitudes is a challenge because of the low sensitivity L-Band radiometric measurements to SSS in cold waters and to the contamination of SMOS measurements by the vicinity of continents, of sea ice and of Radio Frequency Interferences. In this paper, we assess the quality of weekly SSS fields derived from swath-ordered instantaneous SMOS SSS (so called Level 2) distributed by the European Space Agency. These products are filtered according to new criteria. We use the pseudo-dielectric constant retrieved from SMOS brightness temperatures to filter SSS pixels polluted by sea ice. We identify that the dielectric constant model and the sea surface temperature auxiliary parameter used as prior information in the SMOS SSS retrieval induce significant systematic errors at low temperatures. We propose a novel empirical correction to mitigate those sources of errors at high latitudes.Comparisons with in-situ measurements ranging from 1 to 11 m depths spotlight huge vertical stratification in fresh regions. This emphasizes the need to consider in-situ salinity as close as possible to the sea surface when validating L-band radiometric SSS which are representative of the first top centimeter.SSS Standard deviation of differences (STDD) between weekly SMOS SSS and in-situ near surface salinity significantly decrease after applying the SSS correction, from 1.46 pss to 1.28 pss. The correlation between new SMOS SSS and in-situ near surface salinity reaches 0.94. SMOS estimates better capture SSS variability in the Arctic Ocean in comparison to TOPAZ reanalysis (STDD between TOPAZ and in-situ SSS = 1.86 pss), particularly in river plumes with very large SSS spatial gradients. International audience

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    https://hal.sorbonne-universit...
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    OceanRep
    Article . 2020 . Peer-reviewed
    Data sources: OceanRep
    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    Remote Sensing of Environment
    Article . 2020 . Peer-reviewed
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    https://doi.org/10.5194/egusph...
    Other literature type . 2020
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      https://hal.sorbonne-universit...
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      OceanRep
      Article . 2020 . Peer-reviewed
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      Remote Sensing of Environment
      Article . 2020 . Peer-reviewed
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    Authors: Khassoum Correa; Eric Machu; Julien Brajard; Daouda Diouf; +2 Authors

    The Sahara desert is a major global source of dust that is mostly transported southwest over the ocean off West Africa. The presence of this dust impacts the remote sensing of ocean surface properties. These aerosols have absorbing properties that are poorly accounted for in the standard ocean color data processing algorithm. This can result in an overestimation of the atmospheric contribution to the ocean color signal and consequently an underestimation of the oceanic contribution. A two-step algorithm initially applied to the Sea-viewing Wide field-of-view Sensor (SeaWiFS) data was adapted to the Moderate Resolution Imaging Spectroradiometer (MODIS-Aqua) sensor in the Northwest African region. The Northwest African region is a very productive region, where pelagic resources are an important socio-economic sector. Improving atmospheric correction of ocean color products is, thus, of particular interest for this oceanic region. The two-step approach of classifying the top-of-atmosphere radiance spectra for a better estimate of aerosol type on the one hand, and using an optimization method to fit the parameters of these aerosols and chlorophyll-a concentration (Chla) on the other hand, allows for a better representation of the optical thickness, a correction of the marine reflectance spectrum, and an increase in the spatio-temporal coverage of the area. To the extent that the properties of the water color signal are improved by this data processing, the Chla estimates should also be improved by this approach. However, it is difficult to conclude on this point from the available in situ observations. International audience WOS:001038809300001

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    Remote Sensing
    Other literature type . Article . 2023 . Peer-reviewed
    License: CC BY
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    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Remote Sensing
    Article . 2023
    Data sources: DOAJ
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      Remote Sensing
      Other literature type . Article . 2023 . Peer-reviewed
      License: CC BY
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      Remote Sensing
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    Authors: Marine David; Vincent Bailly-Comte; Dominique Munaron; Annie Fiandrino; +1 Authors

    Near-shore and direct groundwater inputs are frequently omitted from nutrient budgets of coastal lagoons. This study investigated groundwater-driven dissolved inorganic nitrogen (DIN) inputs from an alluvial aquifer to the hypertrophic Or lagoon, with a focus on the Salaison River. Piezometric contours revealed that the Salaison hydrogeological catchment is 42% bigger than the surface watershed and hydraulic gradients suggest significant groundwater discharge all along the stream. Hydrograph separation of the water flow at a gauging station located 3 km upstream from the Or lagoon combined with DIN historical data enabled to estimate that groundwater-driven DIN inputs account for 81–87% of the annual total DIN inputs to the stream upstream from the gauging station. A radon mass balance was performed for the hydrological cycle 2017–2018 to estimate groundwater inflow into the downstream part of the stream. Results showed that (1) DIN fluxes increased by a factor 1.1 to 2.3 between the gauging station and the Salaison outlet, (2) the increase in DIN was due to two groundwater-fed canals and to groundwater discharge along the stream, the latter represented 63–78% of the water flow. This study thus highlights the significance of groundwater driven DIN inputs into the Salaison River, which account for 90% of the annual DIN inputs. This is particularly true in the downstream part of the river, which, on averages, supplies 48% of total DIN inputs to the river. These downstream DIN inputs into the Or lagoon were previously not taken into account in the management of this and other Mediterranean lagoons. The inputs will probably affect restoration processes for many years due to their residence time in the aquifer. This study throws light on a rarely documented source of ‘very-nearshore’ groundwater discharge to coastal streams in water and nutrient budgets of coastal zone ecosystems. International audience

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    The Science of The Total Environment
    Article . 2019 . Peer-reviewed
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      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
      The Science of The Total Environment
      Article . 2019 . Peer-reviewed
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