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  • European Marine Science
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  • image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
    Authors: Diaz, Melanie; Grasso, Florent; Le Hir, Pierre; Sottolichio, Aldo; +2 Authors

    Coastal environments are directly influenced by terrigenous inputs coming from rivers through estuaries. Quantifying the amount of nutrients and contaminants transported by sediments from continental areas to the sea is crucial for marine resources protection. However, the complexity of estuarine dynamics makes it difficult to quantify sediment fluxes from field measurements alone and requires numerical modeling. Thus, using a realistic 3D hydrodynamic and sediment transport model, this study aims at evaluating the influence of model empirical parameters on sediment fluxes and estimating uncertainties on mud and sand transfers at a macrotidal estuary mouth. A sensitivity analysis, considering changes in sediment transport parameters, revealed that the system is not only sensitive to settling and erosion parameterizations, but also to the spin‐up period and the sediment sliding process. Both estuarine circulation and tidal pumping induce a residual up‐estuary transport, which is balanced by seaward export during spring tides. Although more fine sediments are exported within the surface turbid plume during high river discharge, the net mud transport is directed up‐estuary due to increased baroclinic circulation. Besides, model results highlighted a strong seasonal variability in sediment fluxes with a short and high import during high river flow and a long and weak export during low river flow. Uncertainties associated with the simulated fluxes were about 93% for mud and 51% for non‐cohesive classes, based on the best performing parameter sets for surface suspended sediment concentrations. These results can be reliably extrapolated to similar macrotidal estuarine systems. Plain language summary Estuaries are transitional zones between terrestrial and marine environments (freshwater vs saltwater). Because of their potential to transport nutrients and contaminants, quantifying the amount of sediment particles (mud and sand) exchanged at this interfacial area is essential for marine resources protection. Here, we use a realistic numerical model of sediment transport applied to an estuary and its adjacent continental shelf. Some parameters in the model are not well‐known and require calibration. This study aims at evaluating the impact of various model calibrations on simulated sediment exchanges at the estuary mouth. We found that the simulated sediment behavior is very sensitive to the selected model parameters. The quantity and direction of simulated exchanges are influenced by the parameterization of sediment erosion and settling (i.e. the rate at which particles are suspended and settle out). The dominant physical processes driving these exchanges are strongly influenced by river flow and tide amplitude. Sediment transfers are very intense and directed upstream during a short period in winter and compensated by weak export seaward during a long period in summer. Besides, uncertainties associated with simulated sediment exchanges are about 93% for mud and 51% for sands, which can reliably be applied to similar estuarine systems.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ArchiMer - Instituti...arrow_drop_down
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    Journal of Geophysical Research Oceans
    Article . 2020 . Peer-reviewed
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      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
      Journal of Geophysical Research Oceans
      Article . 2020 . Peer-reviewed
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    Authors: Smith, Matthew J.; Tittensor, Derek P.; Lyutsarev, Vassily; Murphy, Eugene;

    AbstractAnalyses of satellite‐derived chlorophyll data indicate that the phase of rapid phytoplankton population growth in the North Atlantic (the “spring bloom”) is actually initiated in the winter rather than the spring, contradicting Sverdrup's critical depth hypothesis. An alternative disturbance‐recovery hypothesis (DRH) has been proposed to explain this discrepancy, in which the rapid deepening of the mixed layer reduces zooplankton grazing rates sufficiently to initiate the bloom. We use Bayesian parameter inference on a simple Nutrient‐Phytoplankton‐Zooplankton (NPZ) model to investigate the DRH and also investigate how well the model can capture the multiyear and spatial dynamics of phytoplankton concentrations and population growth rates. Every parameter in our NPZ model was inferred as a probability distribution given empirical constraints, which provides a more objective method to identify a model parameterization given available empirical evidence, rather than fixing or tuning individual parameter values. Our model explains around 75% of variation in the seasonal dynamics of phytoplankton concentrations, 30% of variation in their population rates of change, and correctly predicts the phases of population growth and decline. Our parameter‐inferred model supports the DRH, revealing the sustained reduction of grazing due to mixed‐layer deepening as the driving mechanism behind bloom initiation, with the relaxation of nutrient limitation being another contributory mechanism. Our results also show that the continuation of the bloom is caused in part by the maintenance of phytoplankton concentrations below a level that can support positive zooplankton population growth. Our approach could be employed to formally assess alternative hypotheses for bloom formation.

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    image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    Journal of Geophysical Research Oceans
    Article . 2015 . Peer-reviewed
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ NERC Open Research A...arrow_drop_down
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      image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
      Journal of Geophysical Research Oceans
      Article . 2015 . Peer-reviewed
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    Authors: van Leeuwen, Sonja; Tett, Paul; Mills, David; van der Molen, Johan;

    Abstract The European Unions’ Marine Strategy Framework Directive aims to limit anthropogenic influences in the marine environment. But marine ecosystems are characterized by high variability, and it is not trivial to define its natural state. Here, we use the physical environment as a basis for marine classification, as it determines the conditions in which organisms must operate to survive and thrive locally. We present a delineation of the North Sea into five distinct regimes, based on multidecadal stratification characteristics. Results are based on a 51 year simulation of the region using the coupled hydrobiogeochemical model GETM-ERSEMBFM. The five identified regimes are: permanently stratified, seasonally stratified, intermittently stratified, permanently mixed, and Region Of Freshwater Influence (ROFI). The areas characterized by these regimes show some interannual variation in geographical coverage, but are overall remarkable stable features within the North Sea. Results also show that 29% of North Sea waters fail to classify as one of the defined stratification regimes, due to high interannual variability. Biological characteristics of these regimes differ from diatom based food webs in areas with prolonged stratification to Phaeocystis-dominated food webs in areas experiencing short-lived or no stratification. The spatial stability of the identified regimes indicates that carefully selected monitoring locations can be used to represent a substantive area of the North Sea.

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    ZENODO
    Article . 2015
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    Journal of Geophysical Research Oceans
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    Journal of Geophysical Research Oceans
    Article . 2015 . Peer-reviewed
    License: CC BY
    Data sources: Crossref
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      ZENODO
      Article . 2015
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      Journal of Geophysical Research Oceans
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      Journal of Geophysical Research Oceans
      Article . 2015 . Peer-reviewed
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    Authors: Violaine Pellichero; Jean-Baptiste Sallée; Sunke Schmidtko; Fabien Roquet; +1 Authors

    The oceanic mixed-layer is the gateway for the exchanges between the atmosphere and the ocean; in this layer all hydrographic ocean properties are set for months to millennia. A vast area of the Southern Ocean is seasonally capped by sea-ice, which alters the characteristics of the ocean mixed-layer. The interaction between the ocean mixed-layer and sea-ice plays a key role for water-mass transformation, the carbon cycle, sea-ice dynamics, and ultimately for the climate as a whole. However, the structure and characteristics of the under-ice mixed-layer are poorly understood due to the sparseness of in-situ observations and measurements. In this study, we combine distinct sources of observations to overcome this lack in our understanding of the Polar Regions. Working with Elephant Seal-derived observations, ship-based and Argo float observations, we describe the seasonal cycle of the ocean mixed-layer characteristics and stability of the ocean mixed-layer over the Southern Ocean and specifically under sea-ice. Mixed-layer heat and freshwater budgets are used to investigate the main forcing mechanisms of the mixed-layer seasonal cycle. The seasonal variability of sea surface salinity and temperature are primarily driven by surface processes, dominated by sea-ice freshwater flux for the salt budget, and by air-sea flux for the heat budget. Ekman advection, vertical diffusivity and vertical entrainment play only secondary roles.Our results suggest that changes in regional sea-ice distribution and annual duration, as currently observed, widely affect the buoyancy budget of the underlying mixed-layer, and impact large-scale water-mass formation and transformation with far reaching consequences for ocean ventilation. This article is protected by copyright. All rights reserved.

    image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ OceanReparrow_drop_down
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    OceanRep
    Article . 2017 . Peer-reviewed
    Data sources: OceanRep
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    Journal of Geophysical Research Oceans
    Article . 2017 . Peer-reviewed
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    https://doi.org/10.1002/2016JC...
    Other literature type . Article . 2016 . Peer-reviewed
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    Authors: Houndegnonto, O. J.; Kolodziejczyk, N.; Maes, C.; Bourlès, B.; +2 Authors

    In the eastern Gulf of Guinea (GG), freshwater originated from rivers discharges into the ocean and high precipitation rate are key contributors to the upper ocean vertical density stratification, and play a key role in modulating local air sea interactions as well as biogeochemical cycle. Nevertheless, the dynamics of the GG freshwater plumes remain poorly documented because of the scarcity of historical, in situ observations and the lack of an ad hoc satellite based analysis in this region. Recent advances in remote sensing capabilities from the Soil Moisture and Ocean Salinity (SMOS) satellite mission offer unprecedented coverage and spatiotemporal resolution of Sea Surface Salinity (SSS) in the GG. Using SMOS SSS and available in situ measurements, the seasonal variability of freshwater plumes and associated physical mechanisms controlling their seasonal cycle are presented and analyzed. Freshwater plumes in the GG follow two dynamical regimes. They present maximum offshore extension during boreal winter and exhibit minimum signature during summer. In the northeastern GG, SSS variability is mainly explained by high precipitation rate and Niger River runoff during winter, while during late summer, SSS is mainly driven by horizontal advection. In contrast, southeast of GG, freshwater plumes are mainly supplied by Congo River runoff. From September to March, SSS variability is driven by zonal advection, with a major contribution from Ekman wind driven currents. During spring summer, the observed SSS increase is likely explained by entrainment and vertical mixing. SSS budget and freshwater advection processes are discussed in the context of the shallow stratification induced by freshwater. International audience

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    Journal of Geophysical Research Oceans
    Other literature type . Article . 2021 . Peer-reviewed
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      Journal of Geophysical Research Oceans
      Other literature type . Article . 2021 . Peer-reviewed
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    Authors: Ryan M. Scott; J. Alexander Brearley; Alberto C. Naveira Garabato; Hugh J. Venables; +1 Authors

    AbstractQuantifying and understanding the processes driving turbulent mixing around Antarctica are key to closing the Southern Ocean's heat budget, an essential component of the global climate system. In 2016, a glider deployed in Ryder Bay, West Antarctic Peninsula, collected hydrographic and microstructure data, obtaining some of the first direct measurements of turbulent kinetic energy dissipation off West Antarctica. Elevated dissipation O(10−8) W kg−1 is found above a topographic ridge separating the 520‐m‐deep bay, where values are O(10−10) W kg−1, from a deep fjord of the continental shelf, suggesting the ridge is important in driving upward mixing of warm Circumpolar Deep Water. The 12 glider transects reveal significant temporal variability in hydrographic and dissipation conditions. Mooring‐based current and nearby meteorological data are used to attribute thermocline shoaling (deepening) to Ekman upwelling (downwelling) at Ryder Bay's southern boundary, driven by ∼3‐day‐long south‐westward (north‐westward) wind events. Anticyclonic winds generated near‐inertial shear in the bay's upper layers, causing elevated bay‐wide shear and dissipation ∼1.7 days later. High dissipation over the ridge appears to be controlled hydraulically, being co‐located (and moving) with steeply sloping isopycnals. These are observed in ∼60% of the transects, with a corresponding mean upward heat flux of ∼2.4 W m−2. The ridge, therefore, provides sustained heat to the base of the thermocline, which can be released into overlying waters during the bay‐wide, thermocline‐focused dissipation events (mean heat flux of ∼1.3 W m−2). This highlights the role of ridges, which are widespread across the West Antarctic Peninsula, in the regional heat budget.

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    Journal of Geophysical Research Oceans
    Article . 2021 . Peer-reviewed
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      Journal of Geophysical Research Oceans
      Article . 2021 . Peer-reviewed
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    Authors: Christopher Y. S. Bull; Andrew E. Kiss; Alex Sen Gupta; Nicolas C. Jourdain; +3 Authors

    Like many western boundary currents, the East Australian Current (EAC) extension is projected to get stronger and warmer in the future. The CMIP5 multimodel mean (MMM) projection suggests up to 5°C of warming under an RCP85 scenario by 2100. Previous studies employed Sverdrup balance to associate a trend in basin wide zonally integrated wind stress curl (resulting from the multidecadal poleward intensification in the westerly winds over the Southern Ocean) with enhanced transport in the EAC extension. Possible regional drivers are yet to be considered. Here we introduce the NEMO-OASIS-WRF coupled regional climate model as a framework to improve our understanding of CMIP5 projections. We analyze a hierarchy of simulations in which the regional atmosphere and ocean circulations are allowed to freely evolve subject to boundary conditions that represent present-day and CMIP5 RCP8.5 climate change anomalies. Evaluation of the historical simulation shows an EAC extension that is stronger than similar ocean-only models and observations. This bias is not explained by a linear response to differences in wind stress. The climate change simulations show that regional atmospheric CMIP5 MMM anomalies drive 73% of the projected 12 Sv increase in EAC extension transport whereas the remote ocean boundary conditions and regional radiative forcing (greenhouse gases within the domain) play a smaller role. The importance of regional changes in wind stress curl in driving the enhanced EAC extension is consistent with linear theory where the NEMO-OASIS-WRF response is closer to linear transport estimates compared to the CMIP5 MMM. Plain Language Summary In recent decades, enhanced warming, severe marine heatwaves, and increased transport by the East Australian Current have led to the invasion of nonnative species and the destruction of kelp forests east of Tasmania. The East Australian Current extension is projected to get stronger and warmer in the future. We seek to better understand coupled climate model projections for the Tasman Sea. This is difficult because there is large model diversity and considerable uncertainty as to how and where future changes will occur. In addition, little is known about the possible importance of regional versus large-scale changes in surface time-mean winds in driving future circulation changes. Here we use a single limited-domain ocean-atmosphere coupled model that takes the average model projections as its inputs and finds that changes in the regional wind stress are most important for the enhanced projected East Australian Current extension. We also find that these projected changes are consistent with simple linear theory and the simulated regional changes in wind stress. International audience

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    Journal of Geophysical Research Oceans
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    Journal of Geophysical Research Oceans
    Article . 2020 . Peer-reviewed
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      Journal of Geophysical Research Oceans
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      Journal of Geophysical Research Oceans
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    Authors: Stefanie Arndt; Stephan Paul;

    The snow cover on Antarctic sea ice persists during most of the year, contributing significantly to the sea ice mass budget due to comprehensive seasonal transition processes within the snowpack as well as at the snow/ice interface. Consequently, snow on sea ice varies not only in depth but also in particular in its physical characteristics such as snow density and stratigraphy. In order to quantify the heterogeneous nature of the Antarctic snowpack on different spatial scales, that is, small (<10m), floe-size (1-2km), and regional (seasonal/perennial ice) scales, we present here a case study of snow analyses in the Weddell Sea in austral winter 2013. The resulting high variability of snow parameters in the basal snow layer reveals the need to distinguish between seasonal and perennial ice regimes, when retrieving, for example, snow depth using satellite microwave radiometry. Considering the full vertical snow column, a more detailed distinction of the perennial sea ice regime into, for example, more ice classes is suggested in order to represent the high variability range. For the internal snowpack variability, however, we identify the grain size variability as the main driver, while snow density variations can be neglected. Moving from regional to floe-size scales, a similar variability range of the studied snow properties is found, suggesting that a large number of snow samples on a few floes is more crucial than covering a large region with fewer floe-scale measurements. The spatiotemporally heterogeneous variability in snow accumulation, redistribution, and metamorphism is, however, too large to upscale the given findings beyond regional scale. Plain Language Summary Snow on sea ice alters the properties of the underlying ice cover as well as associated exchange processes at the interfaces between atmosphere, sea ice, and ocean due to its highly insulative and reflective properties. The snow cover on Antarctic sea ice generally persists throughout the year but undergoes substantial seasonal changes in its internal snowpack properties, as, for example, snow density, grain size, and grain shape. However, the spatial variability of these properties is poorly understood, yet this knowledge is crucial for sea ice mass budget calculations as well as the analysis of satellite remote sensing data. In this case study, we present a comprehensive snow data set covering different spatial scales. Thus, snow was sampled on seasonal and perennial sea ice floes across the Weddell Sea, while one floe was more frequently sampled, respectively. An additional 10-m transect allows to conclude also on small-scale variability. Revealed scale-dependent snow property variability is discussed in the context of assumptions in energy and mass budget calculations as well as in recent retrievals of, for example, sea ice thickness, from satellite remote sensing observations in the ice-covered Southern Ocean.

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    Journal of Geophysical Research Oceans
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    Journal of Geophysical Research Oceans
    Article . 2018 . Peer-reviewed
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      Journal of Geophysical Research Oceans
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      Journal of Geophysical Research Oceans
      Article . 2018 . Peer-reviewed
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  • image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    Authors: Hanna M. Kauko; Alexey Pavlov; Geir Johnsen; Mats A. Granskog; +2 Authors

    Recent reports on Arctic underice phytoplankton blooms have directed attention to primary production below the sea ice cover. Such underice blooms cannot be detected from space; thus, methods for autonomous underice measurements are critically needed to extend observations beyond ship-based surveys. One central aspect of the ecology of these blooms is whether they were advected from open-water areas or were able to develop below the ice cover under typically low light conditions. The photoacclimation state of the bloom can provide clues about the growth conditions and therefore its origin. Here we investigate the photoacclimation state of a Phaeocystis pouchetii-dominated underice bloom in the Arctic Ocean using ratios of photoprotective carotenoids (PPC) to photosynthetic carotenoids (PSC) and chlorophyll a. The pigment proxies indicate local growth under the ice pack. Furthermore, a method using in situ light absorption measurements to estimate the PPC:PSC ratio was in agreement with the pigment data. The slope of in situ phytoplankton absorption between 488 and 532nm, affected by both PPC and PSC, had a significant linear relationship to the PPC:PSC ratio, indicating that prediction of photoacclimation state can be obtained from absorption profiles. We also review, with regard to the pigment function, different ways of grouping pigments into PPC or PSC applied in previous studies. Although more validation data sets are needed to assess the impact of pigment packaging on the relationship between PPC:PSC and absorption measurement slopes, our study shows the potential for using in situ absorption measurements to collect information about phytoplankton physiology below sea ice. Plain Language Summary Phytoplankton blooms below sea ice cover, that is, underice blooms, can be advected by ocean currents below the ice pack from ice-free waters where they had sufficient light available for growth. They can also grow below the ice pack if sufficient light is transmitted through the ice, and they are able to adjust to the typically low light conditions. Algal pigments can indicate which of the two scenarios is more likely. Algal pigments capture sunlight for photosynthesis, but some of them are used to protect the algal cells from excess light. The ratio of photoprotective to photosynthetic pigments reveals the photoacclimation state ("short time adjustments") of the algae. In this study we investigate the photoacclimation state of an Arctic underice bloom based on pigment ratios, which indicate local growth below the ice pack. Furthermore, we validate a method to estimate the pigment ratios from light absorption measurements carried out with an instrument in the water column. Studies like these are important for developing methods to study remote areas. Ship-based surveys can only cover a restricted area, and satellite remote sensing does not provide biological information from ice-covered waters. Our study shows promising results for using water column instruments to study phytoplankton physiology.

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    Journal of Geophysical Research Oceans
    Article . 2019 . Peer-reviewed
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      Journal of Geophysical Research Oceans
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    Authors: Alexandra N. Loginova; Sören Thomsen; Anja Engel;

    Key Points: - Two amino acid-like and three humic-like FDOM components were found in and above the oxygen minimum zone off the coast of Peru - The distribution of CDOM and amino acid-like FDOM covaried with chl a, suggesting phytoplankton as their major source - Presence of DOM microbial reworking and DOM release by anoxic sediment was illustrated by the distribution of humic-like FDOM As a result of nutrient upwelling, the Peruvian coastal system is one of the most productive regions in the ocean. Sluggish ventilation of intermediate waters, characteristic for the Eastern Tropical South Pacific (ETSP) and microbial degradation of a high organic matter load promotes deoxygenation at depth. Dissolved organic matter (DOM) plays a key role in microbial respiration and carbon cycling, but little is known on DOM distribution and cycling in the ETSP. DOM optical properties give important insights on DOM sources, structure and biogeochemical reactivity. Here, we present data and a conceptual view on distribution and cycling of chromophoric (CDOM) and fluorescent (FDOM) DOM in and above the oxygen minimum zone (OMZ) off Peru. Five fluorescent components were identified during PARAFAC analysis. Highest intensities of CDOM and of the amino acid-like fluorescent component (C3) occurred above the OMZ and coincided with maximum chl a concentrations, suggesting phytoplankton productivity as major source. High intensities of a marine humic-like fluorescent component (C1), observed in subsurface waters, indicated in situ microbial reworking of DOM. FDOM release from inner shelf sediment was determined by seawater analysis and continuous glider sensor measurement and included a humic-like component (C2) with a signature typical for terrestrially derived humic acids. Upwelling supplied humic-like substances to the euphotic zone. Photo-reactions were likely involved in the production of a humic-like fluorescent component (C5). Our data show that variable biological and physical processes need to be considered for understanding DOM cycling in a highly dynamic coastal upwelling system like the ETSP off Peru.

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    Journal of Geophysical Research Oceans
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      Journal of Geophysical Research Oceans
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    Authors: Diaz, Melanie; Grasso, Florent; Le Hir, Pierre; Sottolichio, Aldo; +2 Authors

    Coastal environments are directly influenced by terrigenous inputs coming from rivers through estuaries. Quantifying the amount of nutrients and contaminants transported by sediments from continental areas to the sea is crucial for marine resources protection. However, the complexity of estuarine dynamics makes it difficult to quantify sediment fluxes from field measurements alone and requires numerical modeling. Thus, using a realistic 3D hydrodynamic and sediment transport model, this study aims at evaluating the influence of model empirical parameters on sediment fluxes and estimating uncertainties on mud and sand transfers at a macrotidal estuary mouth. A sensitivity analysis, considering changes in sediment transport parameters, revealed that the system is not only sensitive to settling and erosion parameterizations, but also to the spin‐up period and the sediment sliding process. Both estuarine circulation and tidal pumping induce a residual up‐estuary transport, which is balanced by seaward export during spring tides. Although more fine sediments are exported within the surface turbid plume during high river discharge, the net mud transport is directed up‐estuary due to increased baroclinic circulation. Besides, model results highlighted a strong seasonal variability in sediment fluxes with a short and high import during high river flow and a long and weak export during low river flow. Uncertainties associated with the simulated fluxes were about 93% for mud and 51% for non‐cohesive classes, based on the best performing parameter sets for surface suspended sediment concentrations. These results can be reliably extrapolated to similar macrotidal estuarine systems. Plain language summary Estuaries are transitional zones between terrestrial and marine environments (freshwater vs saltwater). Because of their potential to transport nutrients and contaminants, quantifying the amount of sediment particles (mud and sand) exchanged at this interfacial area is essential for marine resources protection. Here, we use a realistic numerical model of sediment transport applied to an estuary and its adjacent continental shelf. Some parameters in the model are not well‐known and require calibration. This study aims at evaluating the impact of various model calibrations on simulated sediment exchanges at the estuary mouth. We found that the simulated sediment behavior is very sensitive to the selected model parameters. The quantity and direction of simulated exchanges are influenced by the parameterization of sediment erosion and settling (i.e. the rate at which particles are suspended and settle out). The dominant physical processes driving these exchanges are strongly influenced by river flow and tide amplitude. Sediment transfers are very intense and directed upstream during a short period in winter and compensated by weak export seaward during a long period in summer. Besides, uncertainties associated with simulated sediment exchanges are about 93% for mud and 51% for sands, which can reliably be applied to similar estuarine systems.

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    Journal of Geophysical Research Oceans
    Article . 2020 . Peer-reviewed
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      Journal of Geophysical Research Oceans
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    Authors: Smith, Matthew J.; Tittensor, Derek P.; Lyutsarev, Vassily; Murphy, Eugene;

    AbstractAnalyses of satellite‐derived chlorophyll data indicate that the phase of rapid phytoplankton population growth in the North Atlantic (the “spring bloom”) is actually initiated in the winter rather than the spring, contradicting Sverdrup's critical depth hypothesis. An alternative disturbance‐recovery hypothesis (DRH) has been proposed to explain this discrepancy, in which the rapid deepening of the mixed layer reduces zooplankton grazing rates sufficiently to initiate the bloom. We use Bayesian parameter inference on a simple Nutrient‐Phytoplankton‐Zooplankton (NPZ) model to investigate the DRH and also investigate how well the model can capture the multiyear and spatial dynamics of phytoplankton concentrations and population growth rates. Every parameter in our NPZ model was inferred as a probability distribution given empirical constraints, which provides a more objective method to identify a model parameterization given available empirical evidence, rather than fixing or tuning individual parameter values. Our model explains around 75% of variation in the seasonal dynamics of phytoplankton concentrations, 30% of variation in their population rates of change, and correctly predicts the phases of population growth and decline. Our parameter‐inferred model supports the DRH, revealing the sustained reduction of grazing due to mixed‐layer deepening as the driving mechanism behind bloom initiation, with the relaxation of nutrient limitation being another contributory mechanism. Our results also show that the continuation of the bloom is caused in part by the maintenance of phytoplankton concentrations below a level that can support positive zooplankton population growth. Our approach could be employed to formally assess alternative hypotheses for bloom formation.

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    Journal of Geophysical Research Oceans
    Article . 2015 . Peer-reviewed
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      Journal of Geophysical Research Oceans
      Article . 2015 . Peer-reviewed
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    Authors: van Leeuwen, Sonja; Tett, Paul; Mills, David; van der Molen, Johan;

    Abstract The European Unions’ Marine Strategy Framework Directive aims to limit anthropogenic influences in the marine environment. But marine ecosystems are characterized by high variability, and it is not trivial to define its natural state. Here, we use the physical environment as a basis for marine classification, as it determines the conditions in which organisms must operate to survive and thrive locally. We present a delineation of the North Sea into five distinct regimes, based on multidecadal stratification characteristics. Results are based on a 51 year simulation of the region using the coupled hydrobiogeochemical model GETM-ERSEMBFM. The five identified regimes are: permanently stratified, seasonally stratified, intermittently stratified, permanently mixed, and Region Of Freshwater Influence (ROFI). The areas characterized by these regimes show some interannual variation in geographical coverage, but are overall remarkable stable features within the North Sea. Results also show that 29% of North Sea waters fail to classify as one of the defined stratification regimes, due to high interannual variability. Biological characteristics of these regimes differ from diatom based food webs in areas with prolonged stratification to Phaeocystis-dominated food webs in areas experiencing short-lived or no stratification. The spatial stability of the identified regimes indicates that carefully selected monitoring locations can be used to represent a substantive area of the North Sea.

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    Journal of Geophysical Research Oceans
    Article . 2015 . Peer-reviewed
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      Journal of Geophysical Research Oceans
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    Authors: Violaine Pellichero; Jean-Baptiste Sallée; Sunke Schmidtko; Fabien Roquet; +1 Authors

    The oceanic mixed-layer is the gateway for the exchanges between the atmosphere and the ocean; in this layer all hydrographic ocean properties are set for months to millennia. A vast area of the Southern Ocean is seasonally capped by sea-ice, which alters the characteristics of the ocean mixed-layer. The interaction between the ocean mixed-layer and sea-ice plays a key role for water-mass transformation, the carbon cycle, sea-ice dynamics, and ultimately for the climate as a whole. However, the structure and characteristics of the under-ice mixed-layer are poorly understood due to the sparseness of in-situ observations and measurements. In this study, we combine distinct sources of observations to overcome this lack in our understanding of the Polar Regions. Working with Elephant Seal-derived observations, ship-based and Argo float observations, we describe the seasonal cycle of the ocean mixed-layer characteristics and stability of the ocean mixed-layer over the Southern Ocean and specifically under sea-ice. Mixed-layer heat and freshwater budgets are used to investigate the main forcing mechanisms of the mixed-layer seasonal cycle. The seasonal variability of sea surface salinity and temperature are primarily driven by surface processes, dominated by sea-ice freshwater flux for the salt budget, and by air-sea flux for the heat budget. Ekman advection, vertical diffusivity and vertical entrainment play only secondary roles.Our results suggest that changes in regional sea-ice distribution and annual duration, as currently observed, widely affect the buoyancy budget of the underlying mixed-layer, and impact large-scale water-mass formation and transformation with far reaching consequences for ocean ventilation. This article is protected by copyright. All rights reserved.

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    OceanRep
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    Journal of Geophysical Research Oceans
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    https://doi.org/10.1002/2016JC...
    Other literature type . Article . 2016 . Peer-reviewed
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    Authors: Houndegnonto, O. J.; Kolodziejczyk, N.; Maes, C.; Bourlès, B.; +2 Authors

    In the eastern Gulf of Guinea (GG), freshwater originated from rivers discharges into the ocean and high precipitation rate are key contributors to the upper ocean vertical density stratification, and play a key role in modulating local air sea interactions as well as biogeochemical cycle. Nevertheless, the dynamics of the GG freshwater plumes remain poorly documented because of the scarcity of historical, in situ observations and the lack of an ad hoc satellite based analysis in this region. Recent advances in remote sensing capabilities from the Soil Moisture and Ocean Salinity (SMOS) satellite mission offer unprecedented coverage and spatiotemporal resolution of Sea Surface Salinity (SSS) in the GG. Using SMOS SSS and available in situ measurements, the seasonal variability of freshwater plumes and associated physical mechanisms controlling their seasonal cycle are presented and analyzed. Freshwater plumes in the GG follow two dynamical regimes. They present maximum offshore extension during boreal winter and exhibit minimum signature during summer. In the northeastern GG, SSS variability is mainly explained by high precipitation rate and Niger River runoff during winter, while during late summer, SSS is mainly driven by horizontal advection. In contrast, southeast of GG, freshwater plumes are mainly supplied by Congo River runoff. From September to March, SSS variability is driven by zonal advection, with a major contribution from Ekman wind driven currents. During spring summer, the observed SSS increase is likely explained by entrainment and vertical mixing. SSS budget and freshwater advection processes are discussed in the context of the shallow stratification induced by freshwater. International audience

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    Journal of Geophysical Research Oceans
    Other literature type . Article . 2021 . Peer-reviewed
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      Journal of Geophysical Research Oceans
      Other literature type . Article . 2021 . Peer-reviewed
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    Authors: Ryan M. Scott; J. Alexander Brearley; Alberto C. Naveira Garabato; Hugh J. Venables; +1 Authors

    AbstractQuantifying and understanding the processes driving turbulent mixing around Antarctica are key to closing the Southern Ocean's heat budget, an essential component of the global climate system. In 2016, a glider deployed in Ryder Bay, West Antarctic Peninsula, collected hydrographic and microstructure data, obtaining some of the first direct measurements of turbulent kinetic energy dissipation off West Antarctica. Elevated dissipation O(10−8) W kg−1 is found above a topographic ridge separating the 520‐m‐deep bay, where values are O(10−10) W kg−1, from a deep fjord of the continental shelf, suggesting the ridge is important in driving upward mixing of warm Circumpolar Deep Water. The 12 glider transects reveal significant temporal variability in hydrographic and dissipation conditions. Mooring‐based current and nearby meteorological data are used to attribute thermocline shoaling (deepening) to Ekman upwelling (downwelling) at Ryder Bay's southern boundary, driven by ∼3‐day‐long south‐westward (north‐westward) wind events. Anticyclonic winds generated near‐inertial shear in the bay's upper layers, causing elevated bay‐wide shear and dissipation ∼1.7 days later. High dissipation over the ridge appears to be controlled hydraulically, being co‐located (and moving) with steeply sloping isopycnals. These are observed in ∼60% of the transects, with a corresponding mean upward heat flux of ∼2.4 W m−2. The ridge, therefore, provides sustained heat to the base of the thermocline, which can be released into overlying waters during the bay‐wide, thermocline‐focused dissipation events (mean heat flux of ∼1.3 W m−2). This highlights the role of ridges, which are widespread across the West Antarctic Peninsula, in the regional heat budget.

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    Journal of Geophysical Research Oceans
    Article . 2021 . Peer-reviewed
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      Journal of Geophysical Research Oceans
      Article . 2021 . Peer-reviewed
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    Authors: Christopher Y. S. Bull; Andrew E. Kiss; Alex Sen Gupta; Nicolas C. Jourdain; +3 Authors

    Like many western boundary currents, the East Australian Current (EAC) extension is projected to get stronger and warmer in the future. The CMIP5 multimodel mean (MMM) projection suggests up to 5°C of warming under an RCP85 scenario by 2100. Previous studies employed Sverdrup balance to associate a trend in basin wide zonally integrated wind stress curl (resulting from the multidecadal poleward intensification in the westerly winds over the Southern Ocean) with enhanced transport in the EAC extension. Possible regional drivers are yet to be considered. Here we introduce the NEMO-OASIS-WRF coupled regional climate model as a framework to improve our understanding of CMIP5 projections. We analyze a hierarchy of simulations in which the regional atmosphere and ocean circulations are allowed to freely evolve subject to boundary conditions that represent present-day and CMIP5 RCP8.5 climate change anomalies. Evaluation of the historical simulation shows an EAC extension that is stronger than similar ocean-only models and observations. This bias is not explained by a linear response to differences in wind stress. The climate change simulations show that regional atmospheric CMIP5 MMM anomalies drive 73% of the projected 12 Sv increase in EAC extension transport whereas the remote ocean boundary conditions and regional radiative forcing (greenhouse gases within the domain) play a smaller role. The importance of regional changes in wind stress curl in driving the enhanced EAC extension is consistent with linear theory where the NEMO-OASIS-WRF response is closer to linear transport estimates compared to the CMIP5 MMM. Plain Language Summary In recent decades, enhanced warming, severe marine heatwaves, and increased transport by the East Australian Current have led to the invasion of nonnative species and the destruction of kelp forests east of Tasmania. The East Australian Current extension is projected to get stronger and warmer in the future. We seek to better understand coupled climate model projections for the Tasman Sea. This is difficult because there is large model diversity and considerable uncertainty as to how and where future changes will occur. In addition, little is known about the possible importance of regional versus large-scale changes in surface time-mean winds in driving future circulation changes. Here we use a single limited-domain ocean-atmosphere coupled model that takes the average model projections as its inputs and finds that changes in the regional wind stress are most important for the enhanced projected East Australian Current extension. We also find that these projected changes are consistent with simple linear theory and the simulated regional changes in wind stress. International audience

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    Journal of Geophysical Research Oceans
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    Journal of Geophysical Research Oceans
    Article . 2020 . Peer-reviewed
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      Journal of Geophysical Research Oceans
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      Journal of Geophysical Research Oceans
      Article . 2020 . Peer-reviewed
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    Authors: Stefanie Arndt; Stephan Paul;

    The snow cover on Antarctic sea ice persists during most of the year, contributing significantly to the sea ice mass budget due to comprehensive seasonal transition processes within the snowpack as well as at the snow/ice interface. Consequently, snow on sea ice varies not only in depth but also in particular in its physical characteristics such as snow density and stratigraphy. In order to quantify the heterogeneous nature of the Antarctic snowpack on different spatial scales, that is, small (<10m), floe-size (1-2km), and regional (seasonal/perennial ice) scales, we present here a case study of snow analyses in the Weddell Sea in austral winter 2013. The resulting high variability of snow parameters in the basal snow layer reveals the need to distinguish between seasonal and perennial ice regimes, when retrieving, for example, snow depth using satellite microwave radiometry. Considering the full vertical snow column, a more detailed distinction of the perennial sea ice regime into, for example, more ice classes is suggested in order to represent the high variability range. For the internal snowpack variability, however, we identify the grain size variability as the main driver, while snow density variations can be neglected. Moving from regional to floe-size scales, a similar variability range of the studied snow properties is found, suggesting that a large number of snow samples on a few floes is more crucial than covering a large region with fewer floe-scale measurements. The spatiotemporally heterogeneous variability in snow accumulation, redistribution, and metamorphism is, however, too large to upscale the given findings beyond regional scale. Plain Language Summary Snow on sea ice alters the properties of the underlying ice cover as well as associated exchange processes at the interfaces between atmosphere, sea ice, and ocean due to its highly insulative and reflective properties. The snow cover on Antarctic sea ice generally persists throughout the year but undergoes substantial seasonal changes in its internal snowpack properties, as, for example, snow density, grain size, and grain shape. However, the spatial variability of these properties is poorly understood, yet this knowledge is crucial for sea ice mass budget calculations as well as the analysis of satellite remote sensing data. In this case study, we present a comprehensive snow data set covering different spatial scales. Thus, snow was sampled on seasonal and perennial sea ice floes across the Weddell Sea, while one floe was more frequently sampled, respectively. An additional 10-m transect allows to conclude also on small-scale variability. Revealed scale-dependent snow property variability is discussed in the context of assumptions in energy and mass budget calculations as well as in recent retrievals of, for example, sea ice thickness, from satellite remote sensing observations in the ice-covered Southern Ocean.

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    Journal of Geophysical Research Oceans
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    Journal of Geophysical Research Oceans
    Article . 2018 . Peer-reviewed
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      Journal of Geophysical Research Oceans
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      Journal of Geophysical Research Oceans
      Article . 2018 . Peer-reviewed
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  • image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
    Authors: Hanna M. Kauko; Alexey Pavlov; Geir Johnsen; Mats A. Granskog; +2 Authors

    Recent reports on Arctic underice phytoplankton blooms have directed attention to primary production below the sea ice cover. Such underice blooms cannot be detected from space; thus, methods for autonomous underice measurements are critically needed to extend observations beyond ship-based surveys. One central aspect of the ecology of these blooms is whether they were advected from open-water areas or were able to develop below the ice cover under typically low light conditions. The photoacclimation state of the bloom can provide clues about the growth conditions and therefore its origin. Here we investigate the photoacclimation state of a Phaeocystis pouchetii-dominated underice bloom in the Arctic Ocean using ratios of photoprotective carotenoids (PPC) to photosynthetic carotenoids (PSC) and chlorophyll a. The pigment proxies indicate local growth under the ice pack. Furthermore, a method using in situ light absorption measurements to estimate the PPC:PSC ratio was in agreement with the pigment data. The slope of in situ phytoplankton absorption between 488 and 532nm, affected by both PPC and PSC, had a significant linear relationship to the PPC:PSC ratio, indicating that prediction of photoacclimation state can be obtained from absorption profiles. We also review, with regard to the pigment function, different ways of grouping pigments into PPC or PSC applied in previous studies. Although more validation data sets are needed to assess the impact of pigment packaging on the relationship between PPC:PSC and absorption measurement slopes, our study shows the potential for using in situ absorption measurements to collect information about phytoplankton physiology below sea ice. Plain Language Summary Phytoplankton blooms below sea ice cover, that is, underice blooms, can be advected by ocean currents below the ice pack from ice-free waters where they had sufficient light available for growth. They can also grow below the ice pack if sufficient light is transmitted through the ice, and they are able to adjust to the typically low light conditions. Algal pigments can indicate which of the two scenarios is more likely. Algal pigments capture sunlight for photosynthesis, but some of them are used to protect the algal cells from excess light. The ratio of photoprotective to photosynthetic pigments reveals the photoacclimation state ("short time adjustments") of the algae. In this study we investigate the photoacclimation state of an Arctic underice bloom based on pigment ratios, which indicate local growth below the ice pack. Furthermore, we validate a method to estimate the pigment ratios from light absorption measurements carried out with an instrument in the water column. Studies like these are important for developing methods to study remote areas. Ship-based surveys can only cover a restricted area, and satellite remote sensing does not provide biological information from ice-covered waters. Our study shows promising results for using water column instruments to study phytoplankton physiology.

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    Journal of Geophysical Research Oceans
    Article . 2019 . Peer-reviewed
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      Journal of Geophysical Research Oceans
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    Authors: Alexandra N. Loginova; Sören Thomsen; Anja Engel;

    Key Points: - Two amino acid-like and three humic-like FDOM components were found in and above the oxygen minimum zone off the coast of Peru - The distribution of CDOM and amino acid-like FDOM covaried with chl a, suggesting phytoplankton as their major source - Presence of DOM microbial reworking and DOM release by anoxic sediment was illustrated by the distribution of humic-like FDOM As a result of nutrient upwelling, the Peruvian coastal system is one of the most productive regions in the ocean. Sluggish ventilation of intermediate waters, characteristic for the Eastern Tropical South Pacific (ETSP) and microbial degradation of a high organic matter load promotes deoxygenation at depth. Dissolved organic matter (DOM) plays a key role in microbial respiration and carbon cycling, but little is known on DOM distribution and cycling in the ETSP. DOM optical properties give important insights on DOM sources, structure and biogeochemical reactivity. Here, we present data and a conceptual view on distribution and cycling of chromophoric (CDOM) and fluorescent (FDOM) DOM in and above the oxygen minimum zone (OMZ) off Peru. Five fluorescent components were identified during PARAFAC analysis. Highest intensities of CDOM and of the amino acid-like fluorescent component (C3) occurred above the OMZ and coincided with maximum chl a concentrations, suggesting phytoplankton productivity as major source. High intensities of a marine humic-like fluorescent component (C1), observed in subsurface waters, indicated in situ microbial reworking of DOM. FDOM release from inner shelf sediment was determined by seawater analysis and continuous glider sensor measurement and included a humic-like component (C2) with a signature typical for terrestrially derived humic acids. Upwelling supplied humic-like substances to the euphotic zone. Photo-reactions were likely involved in the production of a humic-like fluorescent component (C5). Our data show that variable biological and physical processes need to be considered for understanding DOM cycling in a highly dynamic coastal upwelling system like the ETSP off Peru.

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    Journal of Geophysical Research Oceans
    Article . 2016 . Peer-reviewed
    License: CC BY NC ND
    Data sources: Crossref
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    Journal of Geophysical Research Oceans
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    Data sources: UnpayWall
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      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ Journal of Geophysic...arrow_drop_down
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      Journal of Geophysical Research Oceans
      Article . 2016 . Peer-reviewed
      License: CC BY NC ND
      Data sources: Crossref
      image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
      Journal of Geophysical Research Oceans
      Article
      License: CC BY NC ND
      Data sources: UnpayWall
      addClaim

      This Research product is the result of merged Research products in OpenAIRE.

      You have already added works in your ORCID record related to the merged Research product.